View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21163_high_30 (Length: 428)
Name: NF21163_high_30
Description: NF21163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21163_high_30 |
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Alignment Details
Target: chr8 (Bit Score: 372; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 1 - 409
Target Start/End: Original strand, 8192336 - 8192744
Alignment:
| Q |
1 |
aatccattatctgatcttcagaatttttaaactaagagaacaatttccagccttttctcttctattccttaatcttcggaatattttaacttcttaagtt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8192336 |
aatccattatctgatcttcagaatttttaaactaagagaacaatttccagccttttctcttctattccttaatcttcggaatattttaacttcttaagtt |
8192435 |
T |
|
| Q |
101 |
gataatttatacaaaaatctaacaccttaacaaatcaaaagnnnnnnngatttcaagattaaattttctggttgtttctcggtctcattgtcacaaaggt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8192436 |
gataatttatacaaaaatctaacaccttaacaaatcaaaagaaaaaaagatttcaagattaaattttctggttgtttctcggtctcattgtcacaaaggt |
8192535 |
T |
|
| Q |
201 |
aaatcaatcttttcacacaagctacctatggcctcgtaccaaatatattaacaaaatatcaaggttcaaaacaatccagttatatttctgttttgatttt |
300 |
Q |
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| T |
8192536 |
aaatcaatcttttcacacatgctacctatggcctcgtaccaaatatattaacgaaatatcaaggttcaaaacaatccagttatatttctgttttgatttt |
8192635 |
T |
|
| Q |
301 |
atattaggtgatcacaatcaggatatcaaagcatataagatatataatgcattaactattaactatacaacataaaatgaaaagacttgccaattatacc |
400 |
Q |
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||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8192636 |
atatttggtgatcacaatcaggatatcaaagcatataaaatatataatgcattaactattaactatacaacataaaatgaaaagacttgccaattatacc |
8192735 |
T |
|
| Q |
401 |
tgacagaac |
409 |
Q |
| |
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||||||||| |
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| T |
8192736 |
tgacagaac |
8192744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 141; Significance: 9e-74; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 141; E-Value: 9e-74
Query Start/End: Original strand, 23 - 409
Target Start/End: Original strand, 42350187 - 42350561
Alignment:
| Q |
23 |
atttttaaactaagagaacaatttccagccttttctcttctattccttaatcttcggaatattttaacttcttaagttgataatttatacaaaaatctaa |
122 |
Q |
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|||||||||||| ||| ||| ||||||| ||||||| |||||||| |||||||| |||||||||||||||||||||||||||| || ||||||| ||| |
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| T |
42350187 |
atttttaaactatgagtgcaagttccagctttttctcatctattccctaatcttcagaatattttaacttcttaagttgataatcta--caaaaatttaa |
42350284 |
T |
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| Q |
123 |
caccttaacaaatcaaaagnnnnnnngatttcaagattaaattttctggttgtttctcggtctcattgtcacaaaggtaaatcaatcttttcacacaagc |
222 |
Q |
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|||||||| ||| | ||| |||||||||| |||| |||||| ||||| | ||||| |||||||||| ||||||||||| ||||| |||| |
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| T |
42350285 |
caccttaataaaactaaa--acataagatttcaagagtaaacattctggccttttctagaactcatcgtcacaaaggaaaatcaatcttctcacaaaagc |
42350382 |
T |
|
| Q |
223 |
tacctatggcctcgtaccaaatatattaacaaaatatcaaggttcaaaacaatccagttatatttctgttttgattttatattaggtgatcacaatcagg |
322 |
Q |
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|| || ||| || |||||||||||||||| |||||||| |||||||||||||| |||||||||| ||| || |||||||||| ||||||||||||||| |
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| T |
42350383 |
tagatagggc-tcataccaaatatattaacgaaatatcagggttcaaaacaatctagttatatttatgtcttcattttatatttggtgatcacaatcaga |
42350481 |
T |
|
| Q |
323 |
atatcaaagcatataagatatataatgcattaactattaactatacaacataaaatgaaaagacttgccaattatacctgacagaac |
409 |
Q |
| |
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|||||||||| || |||||||||||||| |||||||||||||||||||||||||||||||||| ||| | ||||||||||| |
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| T |
42350482 |
atatcaaagcttagaagatatataatgc-------attaactatacaacataaaatgaaaagacttgcccattttccctgacagaac |
42350561 |
T |
|
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