View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21163_high_32 (Length: 410)
Name: NF21163_high_32
Description: NF21163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21163_high_32 |
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Alignment Details
Target: chr3 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 17 - 254
Target Start/End: Complemental strand, 32662263 - 32662026
Alignment:
| Q |
17 |
cagtgttagcagtagcaaaaccctcaacggtgttagccggcggcgcacaaactaatcgccttcacaaattcaaacctctatgcttttcaacaaccacacc |
116 |
Q |
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| T |
32662263 |
cagtgttagcagtagcaaaaccctcaacggtgttagccggcggcgtacaaactaatcgccttcacaaattcaaacctctatgcttttcaacaaccacaac |
32662164 |
T |
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| Q |
117 |
ttcaccttcttctcgaaaactcatcctttactctaaacccggttgctgtttatgcgatggtctcaaagagaagcttcaagatgcattctcgctttctggt |
216 |
Q |
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| T |
32662163 |
ttcaccttcttctcgaaaactcatcctttactctaaacccggttgctgtttatgcgatggtctcaaagagaagcttcaagatgcattctcgctttctggt |
32662064 |
T |
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| Q |
217 |
ccacattcccttaacgacgttgatttacaggtatcatc |
254 |
Q |
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| T |
32662063 |
ccacattcccttaacgacgttgatttacaggtatcatc |
32662026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 322 - 407
Target Start/End: Complemental strand, 32661956 - 32661871
Alignment:
| Q |
322 |
atcagataagagatataacgagcaatccagaatgggaaaaagcttatcaatatgagatacctgtgttagctaaagttctctctgat |
407 |
Q |
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| T |
32661956 |
atcagataagagatataacgagcaatccagaatgggaaaaagcttatcaatatgagatacctgtgttagctaaagttctctctgat |
32661871 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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