View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21163_high_35 (Length: 376)
Name: NF21163_high_35
Description: NF21163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21163_high_35 |
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Alignment Details
Target: chr4 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 1 - 363
Target Start/End: Original strand, 39782516 - 39782878
Alignment:
| Q |
1 |
catgtgacttgtgaatagtaatgtatcagtgcacaatgtaaaatagtggtgttaatgcgtgacatatcaaaccccaccatacttgataacaattgacaca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39782516 |
catgtgacttgtgaatagtaatgtatcagtgcacaaagtaaaatagtggtgttaatgcgtgacatatcaaaccccaccatacttgataacaattgacaca |
39782615 |
T |
|
| Q |
101 |
acatttccaaactccacacaatacaaacatcattcacaaaagttagctaacagaaaatttaaatatatcacattgaccttaacatatannnnnnncttcc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
39782616 |
acatttccaaactccacacaatacaaacatcattcacaaaagttagctaacagaaaatttaaatatatcacattgaccttaacatatatttttttcttcc |
39782715 |
T |
|
| Q |
201 |
cttttttaagtcatgttcagattcatcacttgaaaaaaccaaggtgattgttttaatctctcttgtcttaattgttcttcaataccaaaactactgtttc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39782716 |
cttttttaagtcatgttcagattcatcacttgaaaaaaccaaggtgattgttttaatctctcttgtcttaattgttcttcaataccaaaactactgtttc |
39782815 |
T |
|
| Q |
301 |
tgataattccacttggttcttctcttttcattccattgctatgatgtgtcctccatcttcttg |
363 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39782816 |
tgataattccacttggttcttctcttttcattccattgctatgatgtgtcctccatcttcttg |
39782878 |
T |
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