View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21163_high_41 (Length: 333)
Name: NF21163_high_41
Description: NF21163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21163_high_41 |
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Alignment Details
Target: chr1 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 13 - 317
Target Start/End: Complemental strand, 42157478 - 42157174
Alignment:
| Q |
13 |
aaaatatctctataatgaaacatgtagctgatcttggtacacaggttatagcaactttttagtagtttgaactaagcattggccatgttttgtcataaaa |
112 |
Q |
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| T |
42157478 |
aaaatatctctataatgaaacatgtagctgatcttggtacacaggttatagcaactttttagtagtttgaactaagcattggccatgttttgtcataaaa |
42157379 |
T |
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| Q |
113 |
ctatgagtagtattccatttctggaaaatttgattgagtgttgcatagcgaaatttgggcatacaatattccagaatattttgattgagtaatattccta |
212 |
Q |
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| T |
42157378 |
ctatgagtagtattccattgctggaaaatttgattgagtgttgcatagcgaagtttgggcatacaatattccagaatattttgatcgagtaatattccta |
42157279 |
T |
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| Q |
213 |
gcttcttacagtagaaatcaataacccaataaaactatgagttgtatgcccctgctgaatatttagttgagatgtaaaaattgtgatggttgcaagccag |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
42157278 |
gcttcttacagtagaaatcaataacccaataaaactatgagttgtatgcccctgctgaatatttagttgagatgtaaaaaatgtgatggttgcaagccag |
42157179 |
T |
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| Q |
313 |
aaact |
317 |
Q |
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|||| |
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| T |
42157178 |
taact |
42157174 |
T |
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