View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21163_high_44 (Length: 314)
Name: NF21163_high_44
Description: NF21163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21163_high_44 |
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Alignment Details
Target: chr6 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 297
Target Start/End: Original strand, 2323488 - 2323778
Alignment:
| Q |
1 |
gtaaatgaatttgcctaacactaccatcgttttgtcaagtctcataataataaataaaagagtatgataaaagaataatcttgttcaatgtttttgatta |
100 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
2323488 |
gtaaatgaattttcctaacactaccatcgttttgtcaagtctcataataataaataaaagagtatgataaaagaataatcttgttcaatgttttt-atta |
2323586 |
T |
|
| Q |
101 |
cacagctatatatgacgtaacactatagcagccaattttctaacatcaaaacttgataatttgtgggtgatttgttaaatatggtaaaagataatgtacg |
200 |
Q |
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||| ||||| |||||||||||||||||||||||||| | ||||||||||||||||||||||| |||||||| |||||||||| ||||||||||||| |
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| T |
2323587 |
cactgctat----gacgtaacactatagcagccaattttatgacatcaaaacttgataatttgtgtgtgatttgataaatatggtgcaagataatgtacg |
2323682 |
T |
|
| Q |
201 |
caaattaatgaaaaataatttaatgctgagaagagagtgattggatttgattccaaattaacagagtcagacaaaataatactgctttaaacaaaga |
297 |
Q |
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|||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
2323683 |
caaattgatgaaaaataatttaatgctgagaagagagtga-tggatttgattccaaattaaaagagtcagacaaaataatactgctttaaacaaaga |
2323778 |
T |
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