View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21163_high_49 (Length: 300)
Name: NF21163_high_49
Description: NF21163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21163_high_49 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 241; Significance: 1e-133; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 285
Target Start/End: Original strand, 1922775 - 1923059
Alignment:
| Q |
1 |
cttgcgtttataaatactctgaagtttttctctaaatgacacacacaaatttcatcaaagtatagccttgtatcaagcaaaaccatgttgtctacaaatc |
100 |
Q |
| |
|
|||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |
|
|
| T |
1922775 |
cttgagtttataaatactctaaagtttttctctaaatgacacacacaaatttcatcaaagtatagccttgtatcaagcaaaagcatgtggtctacaaatc |
1922874 |
T |
|
| Q |
101 |
ccattagagctctttttacaagacttatgcaccattccatccataaagatttccatgaagcagtgaccaaaatgtccatctttgatgcttttcgcttcta |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
1922875 |
ccattagagctctttttacaagacttatgcaccattccatccataaagatttccatgaagcagtgaccaaaatgtccatctttgatgcttttctcttcta |
1922974 |
T |
|
| Q |
201 |
tgtacaaagatccttcttcatcaaagatatactatattgttcttgttaccctaataggtacatcacaattgtgtgtcgaaaatat |
285 |
Q |
| |
|
|||||||| | |||||||||||||| ||||||||||||||||||||| ||||||||| |||||||||||||||| |||||||||| |
|
|
| T |
1922975 |
tgtacaaatacccttcttcatcaaatatatactatattgttcttgttgccctaatagttacatcacaattgtgtttcgaaaatat |
1923059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 67 - 193
Target Start/End: Original strand, 1952080 - 1952212
Alignment:
| Q |
67 |
cttgtatcaagcaaaaccatgttgtct------acaaatcccattagagctctttttacaagacttatgcaccattccatccataaagatttccatgaag |
160 |
Q |
| |
|
|||||||||||||||| ||||| |||| ||| ||||||||||| |||| |||||| | |||| || |||||| ||||||||||||||||||||| |
|
|
| T |
1952080 |
cttgtatcaagcaaaatcatgtggtctttagtaacagatcccattagaaatcttgttacaatagttatacaacattccttccataaagatttccatgaag |
1952179 |
T |
|
| Q |
161 |
cagtgaccaaaatgtccatctttgatgcttttc |
193 |
Q |
| |
|
||||| |||||| ||||| | |||||||||| |
|
|
| T |
1952180 |
tagtgaagaaaatgaccatcatagatgcttttc |
1952212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 130 - 198
Target Start/End: Original strand, 1936644 - 1936712
Alignment:
| Q |
130 |
caccattccatccataaagatttccatgaagcagtgaccaaaatgtccatctttgatgcttttcgcttc |
198 |
Q |
| |
|
|||||| ||||||||||||||||||||| ||||||| | |||||||||||| | |||||||||| |||| |
|
|
| T |
1936644 |
caccatgccatccataaagatttccatgcagcagtggcaaaaatgtccatcatagatgcttttctcttc |
1936712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University