View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21163_high_59 (Length: 262)
Name: NF21163_high_59
Description: NF21163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21163_high_59 |
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Alignment Details
Target: chr4 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 7 - 246
Target Start/End: Complemental strand, 51405290 - 51405051
Alignment:
| Q |
7 |
gagagatgaacttaacaacatggagtaaaattcctggatgttctgccattctcataccataagcaagtgcttcatgatcgtcgcgtcctccgaagaagat |
106 |
Q |
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| T |
51405290 |
gagaaatgaacttaacaacatggagtaaaattcctggatgttctgccattctcataccataagcaagtgcttcatgatcgtcgcgtcctccgaagaagat |
51405191 |
T |
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| Q |
107 |
tacagcaaccttaaaggaaacttcacttgcttgaacttgacttgttcctccgagaccgcgatcaatcaaaattccaacagaacaaggtgcatgactcaac |
206 |
Q |
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| T |
51405190 |
tacaacaaccttaaaggaaacttcacttgcttgaacttgacttgttcctccgagaccgcgatcaatcaaaattccaacagaacaaggtgcatgactcaac |
51405091 |
T |
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| Q |
207 |
acgagctcattcattacatgaaatgaatgtcctaatgact |
246 |
Q |
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| T |
51405090 |
acaagctcattcattacatgaaatgaatgtcctaatgact |
51405051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 29 - 199
Target Start/End: Original strand, 29981430 - 29981600
Alignment:
| Q |
29 |
gagtaaaattcctggatgttctgccattctcataccataagcaagtgcttcatgatcgtcgcgtcctccgaagaagattacagcaaccttaaaggaaact |
128 |
Q |
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| T |
29981430 |
gagtgaaattccaggatgttctgctattctcataccgtacgcaagtgcttctcgatcatcacatcctccaaagaaagctacaacaacattgtaagaaaca |
29981529 |
T |
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| Q |
129 |
tcacttgcttgaacttgacttgttcctccgagaccgcgatcaatcaaaattccaacagaacaaggtgcatg |
199 |
Q |
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| T |
29981530 |
tcactagcatggacttgagttgtccctccaaggccacgatcaaccaaaattccaaccgagcaaggagcatg |
29981600 |
T |
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