View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21163_high_63 (Length: 250)
Name: NF21163_high_63
Description: NF21163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21163_high_63 |
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| [»] scaffold0288 (1 HSPs) |
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| [»] chr6 (4 HSPs) |
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Alignment Details
Target: scaffold0288 (Bit Score: 138; Significance: 3e-72; HSPs: 1)
Name: scaffold0288
Description:
Target: scaffold0288; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 10 - 250
Target Start/End: Original strand, 1694 - 1944
Alignment:
| Q |
10 |
acacagatacaggtaattacaattatcggtatggacgtgtcagtgtaagtgtcgtattcattgtccttgtttgtatgttccggcttcatttcatt----- |
104 |
Q |
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| T |
1694 |
acacagatacaggtaattataattattggtatggacgtgtccgtgtaagtgtcgtattcattgtccttatttgtatgtcacgacttcatttcattttcat |
1793 |
T |
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| Q |
105 |
-gcaaaattaataatt---gagttgcatggtacttatttccttttaatagaatctcaacctcccagattttatctgcttggatttc-tttgtattttcca |
199 |
Q |
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| T |
1794 |
tgcaaaattaataataatagagttgcatggtacttatttccttttaatagaatctcaacctcccagattttatttgtttggatttcttttgtattttcca |
1893 |
T |
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| Q |
200 |
attttatagcattgtccnnnnnnnncttctattaaagcacatgcttatcac |
250 |
Q |
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| T |
1894 |
attttatagcgttgtccttttttttcttctattaaagcacatgcttatcac |
1944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 138; Significance: 3e-72; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 10 - 250
Target Start/End: Complemental strand, 4619186 - 4618936
Alignment:
| Q |
10 |
acacagatacaggtaattacaattatcggtatggacgtgtcagtgtaagtgtcgtattcattgtccttgtttgtatgttccggcttcatttcatt----- |
104 |
Q |
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| T |
4619186 |
acacagatacaggtaattataattattggtatggacgtgtccgtgtaagtgtcgtattcattgtccttatttgtatgtcacgacttcatttcattttcat |
4619087 |
T |
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| Q |
105 |
-gcaaaattaataatt---gagttgcatggtacttatttccttttaatagaatctcaacctcccagattttatctgcttggatttc-tttgtattttcca |
199 |
Q |
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| T |
4619086 |
tgcaaaattaataataatagagttgcatggtacttatttccttttaatagaatctcaacctcccagattttatttgtttggatttcttttgtattttcca |
4618987 |
T |
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| Q |
200 |
attttatagcattgtccnnnnnnnncttctattaaagcacatgcttatcac |
250 |
Q |
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| T |
4618986 |
attttatagcgttgtccttttttttcttctattaaagcacatgcttatcac |
4618936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 108 - 215
Target Start/End: Complemental strand, 4603888 - 4603782
Alignment:
| Q |
108 |
aaattaataattgagttgcatggtacttatttccttttaatagaatctcaacctcccagattttatctgcttggatttctttgtattttccaattttata |
207 |
Q |
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| T |
4603888 |
aaattaaaaattgagttggatga-acttatttcactttgttagaatctcaacctcccagattttatctctttggatttctttgtattttccaattttgta |
4603790 |
T |
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| Q |
208 |
gcattgtc |
215 |
Q |
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| T |
4603789 |
gcattgtc |
4603782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 157 - 216
Target Start/End: Complemental strand, 4565756 - 4565697
Alignment:
| Q |
157 |
aacctcccagattttatctgcttggatttctttgtattttccaattttatagcattgtcc |
216 |
Q |
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| T |
4565756 |
aacctcccagaatttatctgtttggatttctttatatttttcaattttgtagcattgtcc |
4565697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 157 - 210
Target Start/End: Complemental strand, 4594744 - 4594691
Alignment:
| Q |
157 |
aacctcccagattttatctgcttggatttctttgtattttccaattttatagca |
210 |
Q |
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| T |
4594744 |
aaccttccagattttaactgtttggatttctttatatttttcaattttatagca |
4594691 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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