View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21163_high_67 (Length: 249)
Name: NF21163_high_67
Description: NF21163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21163_high_67 |
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Alignment Details
Target: chr7 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 103 - 175
Target Start/End: Complemental strand, 16774584 - 16774512
Alignment:
| Q |
103 |
aagcccaacaaatgttacaaaaacactacaattagtttcatttttaatgagcgttacaaggtggtgttactaa |
175 |
Q |
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| T |
16774584 |
aagcccaacaaatgttacaaaaacactacaattagttacatttttaatgagtgttacaaggtggtgttactaa |
16774512 |
T |
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Target: chr3 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 103 - 169
Target Start/End: Complemental strand, 9631003 - 9630937
Alignment:
| Q |
103 |
aagcccaacaaatgttacaaaaacactacaattagtttcatttttaatgagcgttacaaggtggtgt |
169 |
Q |
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| T |
9631003 |
aagcccaacaaatgttacaaaaacactacaattagttacatttttaatgagtgttacaaggtggtgt |
9630937 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 9e-17; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 190 - 238
Target Start/End: Original strand, 41446852 - 41446900
Alignment:
| Q |
190 |
atccttggtcatgtttaatttatattccgatcgaattttggattatctg |
238 |
Q |
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| T |
41446852 |
atccttggtcatgtttaatttatatttcgatcgaattttggattatctg |
41446900 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 41440723 - 41440770
Alignment:
| Q |
1 |
atgaaatcaactttaccgttgcgcaaaaactccccctttctgatattg |
48 |
Q |
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| T |
41440723 |
atgaaatcaactttaccgttgcgccaaaactccccctttctgatattg |
41440770 |
T |
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