View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21163_high_74 (Length: 239)
Name: NF21163_high_74
Description: NF21163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21163_high_74 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 19 - 239
Target Start/End: Complemental strand, 37748386 - 37748166
Alignment:
| Q |
19 |
ggatatgggtgttgttgtttcaagtgatgaaggtgattgtgtgattaagacgttcaagtggattacacaatcagctatgaaagcgtttgttcagtcatgt |
118 |
Q |
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| T |
37748386 |
ggatatgggtgctgttgtttcaagtgatgaaggtgattgtgtgattaagacgttcaagtggattacacaatcagctatgaaagcgtttgttcagtcatat |
37748287 |
T |
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| Q |
119 |
gaggaaaaagtgactgagttagcacaagaaggtgttgattttatgcgtggaattgatggcatattgaggttatcaaagtgtgttcaaggaataaggattg |
218 |
Q |
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| T |
37748286 |
gaggaaaaagtgaccgagttagcacaagaaggtgttgattttatgcgtggaattgatggcatattcaggttatcaaagtgtgttcaaggaataaggattg |
37748187 |
T |
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| Q |
219 |
gagcagaaagttcagttttct |
239 |
Q |
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| T |
37748186 |
gagcagaaagttcagttttct |
37748166 |
T |
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Target: chr8 (Bit Score: 148; Significance: 3e-78; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 19 - 206
Target Start/End: Original strand, 43040451 - 43040638
Alignment:
| Q |
19 |
ggatatgggtgttgttgtttcaagtgatgaaggtgattgtgtgattaagacgttcaagtggattacacaatcagctatgaaagcgtttgttcagtcatgt |
118 |
Q |
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| T |
43040451 |
ggatatgggtgctgttgtttcaagtgataaaggtgattgtgtgattaagacgttcatgtggattacacgatcagctatgaaagcgtttgttcagtcatat |
43040550 |
T |
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| Q |
119 |
gaggaaaaagtgactgagttagcacaagaaggtgttgattttatgcgtggaattgatggcatattgaggttatcaaagtgtgttcaag |
206 |
Q |
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| T |
43040551 |
gaggaaaaagtgactgagttagcacaagaaggtgttgaatttatgcgtggaattgttgacatattcaggttatcaaagtttgttcaag |
43040638 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 211 - 239
Target Start/End: Original strand, 43040974 - 43041002
Alignment:
| Q |
211 |
aaggattggagcagaaagttcagttttct |
239 |
Q |
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| T |
43040974 |
aaggattggagcagaaagttcagttttct |
43041002 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 86; Significance: 3e-41; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 20 - 201
Target Start/End: Complemental strand, 13108202 - 13108021
Alignment:
| Q |
20 |
gatatgggtgttgttgtttcaagtgatgaaggtgattgtgtgattaagacgttcaagtggattacacaatcagctatgaaagcgtttgttcagtcatgtg |
119 |
Q |
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| T |
13108202 |
gatatgggtgatattatttcaagcgatgatggtgatggtgtgataaagacgttcaagtggattacaagatcagctatgaaagaatttgttgagtcagatg |
13108103 |
T |
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| Q |
120 |
aggaaaaagtgactgagttagcacaagaaggtgttgattttatgcgtggaattgatggcatattgaggttatcaaagtgtgt |
201 |
Q |
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| T |
13108102 |
aggaaacaatgactaagttagcacaagaaggtgttgttgttatgcatgaaattgatgacatattcaagttatcaaagtgtgt |
13108021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 20 - 197
Target Start/End: Complemental strand, 18801204 - 18801027
Alignment:
| Q |
20 |
gatatgggtgttgttgtttcaagtgatgaaggtgattgtgtgattaagacgttcaagtggattacacaatcagctatgaaagcgtttgttcagtcatgtg |
119 |
Q |
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|||| ||||||||||||||||||||||||||| ||| |||| || || | |||||||| ||||||| || || ||||||| ||||||| |||| || |
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| T |
18801204 |
gatacgggtgttgttgtttcaagtgatgaaggcgatggtgtaataaatatgttcaagtagattacatgattagttatgaaattgtttgttgagtccgttg |
18801105 |
T |
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| Q |
120 |
aggaaaaagtgactgagttagcacaagaaggtgttgattttatgcgtggaattgatggcatattgaggttatcaaagt |
197 |
Q |
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| T |
18801104 |
aagaaagagtgacttggttaacataagaaggtgatgcaatcatgcgtgaaattgatgacatattccggttatgaaagt |
18801027 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 26 - 109
Target Start/End: Original strand, 54016601 - 54016684
Alignment:
| Q |
26 |
ggtgttgttgtttcaagtgatgaaggtgattgtgtgattaagacgttcaagtggattacacaatcagctatgaaagcgtttgtt |
109 |
Q |
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| T |
54016601 |
ggtgttgttgtttcaagtaatgaaggtgattgtgtgataaagacgttcaagtggattacatgatcaactatgaaagcttttgtt |
54016684 |
T |
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