View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21163_high_75 (Length: 238)
Name: NF21163_high_75
Description: NF21163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21163_high_75 |
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Alignment Details
Target: chr3 (Bit Score: 129; Significance: 7e-67; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 18 - 150
Target Start/End: Original strand, 24570969 - 24571101
Alignment:
| Q |
18 |
gaagacacatgatattttctcacacttgacacttattcctttacttctcaagaaacattgtcaagaggcacttcacaagacacaccaacaatacaatgca |
117 |
Q |
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| T |
24570969 |
gaagacacatgatattttctcacatttgacacttattcctttacttctcaagaaacattgtcaagaggcacttcacaagacacaccaacaatacaatgca |
24571068 |
T |
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| Q |
118 |
attttacataaggcacttttccacacacttggt |
150 |
Q |
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| T |
24571069 |
attttacataaggcacttttccacacacttggt |
24571101 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 183 - 238
Target Start/End: Original strand, 24571496 - 24571551
Alignment:
| Q |
183 |
atgcaaacactcatgatttaattattgccttacttaaaggtggagacctcgaaacc |
238 |
Q |
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| T |
24571496 |
atgcaaacactcgtgatttaattattgccttacttaaagctgaagacctcgaaacc |
24571551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 144 - 177
Target Start/End: Original strand, 24571121 - 24571154
Alignment:
| Q |
144 |
acttggtggagaatgtggtactatgctctcttag |
177 |
Q |
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| T |
24571121 |
acttgatggagaatgtggtactatgctctcttag |
24571154 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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