View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21163_high_77 (Length: 237)
Name: NF21163_high_77
Description: NF21163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21163_high_77 |
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Alignment Details
Target: chr5 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 5 - 221
Target Start/End: Original strand, 6615137 - 6615356
Alignment:
| Q |
5 |
gatgattttggggttaagatggatacaagtggcgttggaagnnnnnnnn--tggttttaaagtaatataacagtgttttaattaggtatttgaatattat |
102 |
Q |
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| T |
6615137 |
gatgattttggggttaagatggatacaagtggcgttggaagaaaaaaaaaatgattttaaagtaatataatagtgttttaattaggtatttgaatattat |
6615236 |
T |
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| Q |
103 |
tacatatacatgtcatatttatcttcgacaatattcaagatggtgattaatgagtgggttaaagatcttaaatttgattacattattttcaa-tttttaa |
201 |
Q |
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| T |
6615237 |
tacatatacatgtcatatttttcttcgacaatattcaagatggtgattaatgagtgggttaaagatcttaaatttgattacattattttcaattttttaa |
6615336 |
T |
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| Q |
202 |
agagatagatatatagatga |
221 |
Q |
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| T |
6615337 |
agagatagatatatagatga |
6615356 |
T |
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Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 141 - 199
Target Start/End: Complemental strand, 45446777 - 45446719
Alignment:
| Q |
141 |
gatggtgattaatgagtgggttaaagatcttaaatttgattacattattttcaattttt |
199 |
Q |
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| T |
45446777 |
gatggtgattaatgagttggttaaagatcttgaatttgattccattattttcagttttt |
45446719 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 123 - 191
Target Start/End: Original strand, 52068594 - 52068663
Alignment:
| Q |
123 |
atcttcgacaatattcaag-atggtgattaatgagtgggttaaagatcttaaatttgattacattatttt |
191 |
Q |
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| T |
52068594 |
atcttctacattattcaaggatggtaattaataagtgggttaaatatctcaaatttgattacattatttt |
52068663 |
T |
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