View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21163_high_78 (Length: 237)

Name: NF21163_high_78
Description: NF21163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21163_high_78
NF21163_high_78
[»] chr1 (3 HSPs)
chr1 (1-218)||(11098885-11099103)
chr1 (84-137)||(36343079-36343132)
chr1 (102-154)||(36472657-36472709)
[»] chr2 (1 HSPs)
chr2 (96-152)||(14195191-14195247)
[»] chr4 (6 HSPs)
chr4 (95-154)||(29728798-29728857)
chr4 (106-151)||(38020376-38020421)
chr4 (102-154)||(2097084-2097136)
chr4 (102-154)||(8456805-8456857)
chr4 (112-154)||(30979823-30979865)
chr4 (112-154)||(38450699-38450741)
[»] chr7 (3 HSPs)
chr7 (84-154)||(42713581-42713651)
chr7 (84-154)||(32002124-32002194)
chr7 (102-154)||(33084962-33085014)
[»] chr3 (1 HSPs)
chr3 (112-154)||(42529435-42529477)
[»] chr5 (1 HSPs)
chr5 (107-154)||(10635359-10635406)
[»] chr8 (2 HSPs)
chr8 (112-154)||(5431628-5431670)
chr8 (84-154)||(26413440-26413510)
[»] chr6 (1 HSPs)
chr6 (112-152)||(21537469-21537509)


Alignment Details
Target: chr1 (Bit Score: 162; Significance: 1e-86; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 11099103 - 11098885
Alignment:
Q  1 aacattccttttagctggtagtgcaatttaattatttatttattttaatggcaaatattagtatgttatgttagcnnnnnnnnct-ccttgccaagactt 99  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        || ||||||||||||||    
T  11099103 aacattccttttagctggtagtgcaatttaattatttatttattttaatggcaaatattagtatgttatgttagcttttttttcttccttgccaagactt 11099004  T
Q  100 ggaccctggacttccaactccttaacccttagctcaaacctgctgagctacccaannnnnnnagtgaaatctaattacgattacttgtcagttgcaaatt 199  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||| |||||||||||||||||||||||||||||||||    
T  11099003 ggaccctggacttccaactccttaacccttagctcaaacctgctgagctacccaacccccccagtgcaatctaattacgattacttgtcagttgcaaatt 11098904  T
Q  200 aataaacatgacaagtact 218  Q
    |||||||||||||||||||    
T  11098903 aataaacatgacaagtact 11098885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 84 - 137
Target Start/End: Complemental strand, 36343132 - 36343079
Alignment:
Q  84 ctccttgccaagacttggaccctggacttccaactccttaacccttagctcaaa 137  Q
    |||||||||| | |||| ||||||||| | ||||||||||||||| ||||||||    
T  36343132 ctccttgccagggcttgaaccctggaccttcaactccttaaccctgagctcaaa 36343079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 154
Target Start/End: Original strand, 36472657 - 36472709
Alignment:
Q  102 accctggacttccaactccttaacccttagctcaaacctgctgagctacccaa 154  Q
    |||| |||| |||||||||||| ||||||||||| ||| | ||||||||||||    
T  36472657 acccaggacctccaactccttatcccttagctcagaccagttgagctacccaa 36472709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 96 - 152
Target Start/End: Original strand, 14195191 - 14195247
Alignment:
Q  96 acttggaccctggacttccaactccttaacccttagctcaaacctgctgagctaccc 152  Q
    ||||| || |||||| |||||||||||||||||||||||||||| | ||||||||||    
T  14195191 acttgaacactggacctccaactccttaacccttagctcaaaccagttgagctaccc 14195247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 95 - 154
Target Start/End: Original strand, 29728798 - 29728857
Alignment:
Q  95 gacttggaccctggacttccaactccttaacccttagctcaaacctgctgagctacccaa 154  Q
    |||||| |||||| |  |||||||||||||||||||||||||||| | ||||||||||||    
T  29728798 gacttgaaccctgaatctccaactccttaacccttagctcaaaccagttgagctacccaa 29728857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 106 - 151
Target Start/End: Complemental strand, 38020421 - 38020376
Alignment:
Q  106 tggacttccaactccttaacccttagctcaaacctgctgagctacc 151  Q
    ||||| |||||||||||||||||||||||||||| | |||||||||    
T  38020421 tggacctccaactccttaacccttagctcaaaccagttgagctacc 38020376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 102 - 154
Target Start/End: Complemental strand, 2097136 - 2097084
Alignment:
Q  102 accctggacttccaactccttaacccttagctcaaacctgctgagctacccaa 154  Q
    |||| |||| |||||||||||||||||||||||||||  | ||||||||||||    
T  2097136 acccaggacctccaactccttaacccttagctcaaactagttgagctacccaa 2097084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 102 - 154
Target Start/End: Complemental strand, 8456857 - 8456805
Alignment:
Q  102 accctggacttccaactccttaacccttagctcaaacctgctgagctacccaa 154  Q
    |||| |||| |||||||||||| ||||||||||||||| | ||||||||||||    
T  8456857 acccaggacatccaactccttatcccttagctcaaaccagttgagctacccaa 8456805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 154
Target Start/End: Complemental strand, 30979865 - 30979823
Alignment:
Q  112 tccaactccttaacccttagctcaaacctgctgagctacccaa 154  Q
    |||||||||||| ||||||||||||||| | ||||||||||||    
T  30979865 tccaactccttatcccttagctcaaaccagttgagctacccaa 30979823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 154
Target Start/End: Complemental strand, 38450741 - 38450699
Alignment:
Q  112 tccaactccttaacccttagctcaaacctgctgagctacccaa 154  Q
    ||||||| |||||||||||||||||||| | ||||||||||||    
T  38450741 tccaacttcttaacccttagctcaaaccagttgagctacccaa 38450699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 84 - 154
Target Start/End: Complemental strand, 42713651 - 42713581
Alignment:
Q  84 ctccttgccaagacttggaccctggacttccaactccttaacccttagctcaaacctgctgagctacccaa 154  Q
    ||||||||||||||||  ||||||||| || ||||| ||||||||||||||||| | | |||||| |||||    
T  42713651 ctccttgccaagacttaaaccctggacctctaactcgttaacccttagctcaaatcagttgagctgcccaa 42713581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 84 - 154
Target Start/End: Original strand, 32002124 - 32002194
Alignment:
Q  84 ctccttgccaagacttggaccctggacttccaactccttaacccttagctcaaacctgctgagctacccaa 154  Q
    |||||||||| |||||  ||||| |||  ||||| ||||||||||||||||||||| | ||||||| ||||    
T  32002124 ctccttgccaggacttaaacccttgaccgccaacaccttaacccttagctcaaaccagttgagctaaccaa 32002194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 154
Target Start/End: Original strand, 33084962 - 33085014
Alignment:
Q  102 accctggacttccaactccttaacccttagctcaaacctgctgagctacccaa 154  Q
    |||| |||| ||||||||| || ||||||||||||||| | ||||||||||||    
T  33084962 acccaggacctccaactccatatcccttagctcaaaccagttgagctacccaa 33085014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 112 - 154
Target Start/End: Complemental strand, 42529477 - 42529435
Alignment:
Q  112 tccaactccttaacccttagctcaaacctgctgagctacccaa 154  Q
    |||||||||||| ||||||||||||||| ||||||||||||||    
T  42529477 tccaactccttatcccttagctcaaaccagctgagctacccaa 42529435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 107 - 154
Target Start/End: Original strand, 10635359 - 10635406
Alignment:
Q  107 ggacttccaactccttaacccttagctcaaacctgctgagctacccaa 154  Q
    |||| |||||||||||| ||||||||||||||| | ||||||||||||    
T  10635359 ggacctccaactccttatcccttagctcaaaccagttgagctacccaa 10635406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 154
Target Start/End: Complemental strand, 5431670 - 5431628
Alignment:
Q  112 tccaactccttaacccttagctcaaacctgctgagctacccaa 154  Q
    |||||||||||| ||||||||||||| | ||||||||||||||    
T  5431670 tccaactccttatcccttagctcaaatcagctgagctacccaa 5431628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 84 - 154
Target Start/End: Original strand, 26413440 - 26413510
Alignment:
Q  84 ctccttgccaagacttggaccctggacttccaactccttaacccttagctcaaacctgctgagctacccaa 154  Q
    |||||| |||||||||| | ||||||| |||||||| | ||| |||| |||||||| | ||||||||||||    
T  26413440 ctcctttccaagacttgaatcctggacatccaactcatgaactcttacctcaaaccagttgagctacccaa 26413510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 152
Target Start/End: Complemental strand, 21537509 - 21537469
Alignment:
Q  112 tccaactccttaacccttagctcaaacctgctgagctaccc 152  Q
    |||||||||||||||||||||||||||  | ||||||||||    
T  21537509 tccaactccttaacccttagctcaaactagttgagctaccc 21537469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University