View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21163_high_8 (Length: 559)
Name: NF21163_high_8
Description: NF21163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21163_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 527; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 527; E-Value: 0
Query Start/End: Original strand, 13 - 543
Target Start/End: Complemental strand, 39220951 - 39220421
Alignment:
| Q |
13 |
catcatcagctgcaaaatcttgtttttcttcctccataatcacatcacacttccatttgggagatgttaagatttctttcatgacaccactagcaaattt |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39220951 |
catcatcagctgcaaaatcttgtttttcttcctccataatcacatcacacttccatttgggagatgttaagatttctttcatgacaccactagcaaattt |
39220852 |
T |
|
| Q |
113 |
cctcctcaatcttgcccaaccatgtcctgtagcaggaagagaagtttctgatccagaattagctacagaaaaaggtggaacaaccccaccagaaattgcc |
212 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39220851 |
cctcctcaatcttgcccaaccatgttctgtagcaggaagagaagtttctgatccagaattagctacagaaaaaggtggaacaaccccaccagaaattgcc |
39220752 |
T |
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| Q |
213 |
ttgtggaaaatctcaaaatccaaatcataagcatcaacttttcttagaccaatctccatcttttcagtaggcaaaaccagttgtttatcagaatcacctg |
312 |
Q |
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| T |
39220751 |
ttgtggaaaatctcaaaatccaaatcataagcatcaacttttcttagaccaatctccatcttttcagtaggcaaaaccagttgtttatcagaatcacctg |
39220652 |
T |
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| Q |
313 |
acaaacgttgctgatcagaaagagcaatccaaaactcagctgattcttgatcttcacggatgctcaaaattggaccctttgctccctcatagcgcacaac |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39220651 |
acaaacgttgctgatcagaaagagcaatccaaaactcagctgattcttgatcttcacggatgctcaaaattggaccctttgctccctcatagcgcacaac |
39220552 |
T |
|
| Q |
413 |
ctgaaaagccgcactctttgcgttgcatgacataaccaagtcacaatttttcccaatccacacatagatagcagaaggaacatgaacaataaaagcacca |
512 |
Q |
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| T |
39220551 |
ctgaaaagccgcactctttgcgttgcatgacataaccaagtcacaatttttcccaatccacacatagatagcagaaggaacatgaacaataaaagcacca |
39220452 |
T |
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| Q |
513 |
cgcgaatcaagtgctagtgaacctggttggt |
543 |
Q |
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| T |
39220451 |
cgcgaatcaagtgctagtgaacctggttggt |
39220421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 57; Significance: 2e-23; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 88 - 256
Target Start/End: Complemental strand, 37348119 - 37347951
Alignment:
| Q |
88 |
ctttcatgacaccactagcaaatttcctcctcaatcttgcccaaccatgtcctgtagcaggaagagaagtttctgatccagaattagctacagaaaaagg |
187 |
Q |
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| T |
37348119 |
ctttcatgataccattagcaagcttcctccttagtcttccccagctattttctctagcaggaagcaaggtttctgatcctgtattagatacagaaaaagg |
37348020 |
T |
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| Q |
188 |
tggaacaaccccaccagaaattgccttgtggaaaatctcaaaatccaaatcataagcatcaacttttct |
256 |
Q |
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| T |
37348019 |
tggaacaacaccccctgcaagtgctttgtgaaaaatcccaaaatccaaatcatactcatcaacttttct |
37347951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 455 - 523
Target Start/End: Complemental strand, 37347713 - 37347645
Alignment:
| Q |
455 |
acaatttttcccaatccacacatagatagcagaaggaacatgaacaataaaagcaccacgcgaatcaag |
523 |
Q |
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| T |
37347713 |
acaatttttaccaatccaaacatatatagcagaaggtacatgaacaataaaagcaccgcgagaatcaag |
37347645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 466 - 527
Target Start/End: Complemental strand, 24153775 - 24153714
Alignment:
| Q |
466 |
caatccacacatagatagcagaaggaacatgaacaataaaagcaccacgcgaatcaagtgct |
527 |
Q |
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| T |
24153775 |
caatccaaacatatatagcagaagaaacattaacagtaaaagcaccacgagaatcaaatgct |
24153714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 460 - 529
Target Start/End: Complemental strand, 17116159 - 17116090
Alignment:
| Q |
460 |
ttttcccaatccacacatagatagcagaaggaacatgaacaataaaagcaccacgcgaatcaagtgctag |
529 |
Q |
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| T |
17116159 |
ttttaccaatccacacatatatcgttgaaggaacatgaacaataaaaacaatacgagaatcaagagctag |
17116090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 460 - 529
Target Start/End: Original strand, 50071655 - 50071724
Alignment:
| Q |
460 |
ttttcccaatccacacatagatagcagaaggaacatgaacaataaaagcaccacgcgaatcaagtgctag |
529 |
Q |
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| T |
50071655 |
ttttaccaatccacacatatatcgttgaaggaacatgaacaataaaaacaatacgagaatcaagagctag |
50071724 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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