View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21163_high_88 (Length: 218)
Name: NF21163_high_88
Description: NF21163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21163_high_88 |
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Alignment Details
Target: chr7 (Bit Score: 179; Significance: 9e-97; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 17 - 203
Target Start/End: Complemental strand, 21097849 - 21097663
Alignment:
| Q |
17 |
cataggttcacaaccataagaccaatcattaggatttttcattctataccctggaatacaagagcattttcttccaatcttaggactataactacatgta |
116 |
Q |
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| T |
21097849 |
cataggttcacaaccataagaccaatcattaggattgttcattctataccctggaatacaagagcattttcttccaatcttaggactataactacatgta |
21097750 |
T |
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| Q |
117 |
ctattagctccacaaattccatgaactaaacaagtacctgtaaaggcttgccatgaaacataccaattctgtgacacattagttctg |
203 |
Q |
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| T |
21097749 |
ctattagctccacaaattccatgaactaaacaagtacctgtaaaggcttgccatgaaacataccaattctgtgacacattcgttctg |
21097663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 17 - 202
Target Start/End: Complemental strand, 21107468 - 21107283
Alignment:
| Q |
17 |
cataggttcacaaccataagaccaatcattaggatttttcattctataccctggaatacaagagcattttcttccaatcttaggactataactacatgta |
116 |
Q |
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|||||| ||||||||||||||||||||| || | || |||| ||||||||||||||||||||| |||||||||||| ||||||| ||||||||||||| |
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| T |
21107468 |
cataggctcacaaccataagaccaatcactatggttcttcactctataccctggaatacaagaacattttcttccatgcttaggattataactacatgtg |
21107369 |
T |
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| Q |
117 |
ctattagctccacaaattccatgaactaaacaagtacctgtaaaggcttgccatgaaacataccaattctgtgacacattagttct |
202 |
Q |
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|||||| |||||||||| |||||| ||| |||| ||| || |||||||||||||||||||||||| |||||||||||| |||| |
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| T |
21107368 |
ctattatctccacaaatcccatgagctatgcaagcaccataaatggcttgccatgaaacataccaattttgtgacacattaattct |
21107283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 19 - 85
Target Start/End: Original strand, 21112405 - 21112471
Alignment:
| Q |
19 |
taggttcacaaccataagaccaatcattaggatttttcattctataccctggaatacaagagcattt |
85 |
Q |
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| T |
21112405 |
taggttcacatccataagaccaatcattatggttcttcattttataccccggcaaacaagagcattt |
21112471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 86
Target Start/End: Original strand, 21131366 - 21131432
Alignment:
| Q |
20 |
aggttcacaaccataagaccaatcattaggatttttcattctataccctggaatacaagagcatttt |
86 |
Q |
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||||||||||||||||||||||||| || | || |||| | |||| ||||| | ||||||||||||| |
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| T |
21131366 |
aggttcacaaccataagaccaatcactatggttcttcactttatatcctggcaaacaagagcatttt |
21131432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 85
Target Start/End: Original strand, 18659525 - 18659593
Alignment:
| Q |
17 |
cataggttcacaaccataagaccaatcattaggatttttcattctataccctggaatacaagagcattt |
85 |
Q |
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|||||||||||||||| |||| |||||||| | || |||| | |||||||||| | |||||||||||| |
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| T |
18659525 |
cataggttcacaaccagaagagaaatcattatggttcttcactttataccctggcaaacaagagcattt |
18659593 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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