View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21163_low_10 (Length: 540)
Name: NF21163_low_10
Description: NF21163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21163_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 254; Significance: 1e-141; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 283
Target Start/End: Complemental strand, 6615076 - 6614793
Alignment:
| Q |
1 |
taggggcgcaataacactatagtgtagcgaaacttgaataaa--acaaatttttgtagttggtgattaaaggacacagtttttacggtgatgttggacta |
98 |
Q |
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| T |
6615076 |
taggggcgcaataacactatagtgtagcgaaacttgaataaacaacaaatttttgtagttggtgattaa-ggacacagtttttacggtgatgttggacta |
6614978 |
T |
|
| Q |
99 |
tattagactagactagagttatttgctatctgatgcctaaatctattaagttttttaaatcacaccttcaaactattttattgattattttgtttttgct |
198 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6614977 |
tattagactagactagagttatttgctatctgatgcctaaatctattaagttttttaaatcacaccttcaaactattttattgattattttgtttttgct |
6614878 |
T |
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| Q |
199 |
aagtaatcctatttgttccaagtcagtcatttttatttcttatgtggcacctatttttcactgtactgctctcatattcttaatg |
283 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |||||||||||||||||||||||| |
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| T |
6614877 |
aagtaatcctatttgttccaagtcagtcatttttctttcttatgtggcacctatgtttcattgtactgctctcatattcttaatg |
6614793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 319 - 527
Target Start/End: Complemental strand, 6614788 - 6614580
Alignment:
| Q |
319 |
accattattcaatctatgtatgatcccggtcttcatttatttctagttcctttaacagatatccaacacgtgttaattaaagatttcaaaggtctagata |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6614788 |
accattattcaatctatgtatgatcccggtcttcatttatttctagttcctttaacagatatccaacacgtgttaattaaagatttcaaaggtctagata |
6614689 |
T |
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| Q |
419 |
ccaaccctcattgtaacccaatcacctctccctctcgccgcctgcgtcatcccatctcaccgtcaccctgtcaccacctcgccatctcactgccatatat |
518 |
Q |
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||||| |||||||||||||||||| |||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
6614688 |
ccaactctcattgtaacccaatcatctctccctctcgccgcctgcgtcatcccgtctcactgtcaccctgtcaccacctcgccatctcactgccatatat |
6614589 |
T |
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| Q |
519 |
accgtctct |
527 |
Q |
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||||||||| |
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| T |
6614588 |
accgtctct |
6614580 |
T |
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