View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21163_low_14 (Length: 523)
Name: NF21163_low_14
Description: NF21163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21163_low_14 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 487; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 487; E-Value: 0
Query Start/End: Original strand, 5 - 523
Target Start/End: Complemental strand, 51579938 - 51579421
Alignment:
| Q |
5 |
agaagaaactagttcaaagtaagttcctgctttactttatgctaagaagagtatggccattcaaagaatatttgcattgcataattgttcctacaagtta |
104 |
Q |
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| T |
51579938 |
agaagaaactagttctaattaagttcctgctttactttatgctaagaagagtatggccattcaaagaatatttgcattgcataattgttcctacaagtta |
51579839 |
T |
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| Q |
105 |
cattatagtgccatttctgttcgttggatttaagtattggtaaacggtaaaccaatgaggctttatatcttttagggtaaagtaaagactaagtaatttc |
204 |
Q |
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| T |
51579838 |
cattatagtgccatttctgttcgttggatttaagtattggtaaacggtaaaccaatgaggctttatatcttttagggtaaagtaaagactaagtaatttc |
51579739 |
T |
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| Q |
205 |
attatgtgtgatgataaattctttacatgctaccatttggccttcaaacagttcatatttgctttaatttgcaaactggttctgcttctaatctaaccat |
304 |
Q |
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| T |
51579738 |
attatgtgtgatgataaattctttacatgctaccatttggccttcaaacagttcatatttgctttaatttgcaaactggttctgcttctaatctaaccat |
51579639 |
T |
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| Q |
305 |
ctgtgttggacaacttggaaagaagtttctaaaatattacaatcatactctcggggaggcaaatcacggagctaacacgggtgcaaaggagggttgaaaa |
404 |
Q |
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| T |
51579638 |
ctgtgttggacaacttggaaagaagtttgtaaaatattacaatcatactctcggggaggcaaatcacggagctaacac-ggtgcaaaggagggttgaaaa |
51579540 |
T |
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| Q |
405 |
agtcgatgcacatgtatattttttacttatgttcctactttttgctatttattagtgtttgttgttgataactttgaattgctggttgtaatttctttat |
504 |
Q |
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| T |
51579539 |
agtcgatgcacatgtatattttttacttatgttcctactttttgctatttattagtgtttgttgttgataactttgaattgctggttgtaatttctttat |
51579440 |
T |
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| Q |
505 |
tttatattcttggacatcc |
523 |
Q |
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| T |
51579439 |
tttattttgtgggacatcc |
51579421 |
T |
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