View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21163_low_15 (Length: 507)
Name: NF21163_low_15
Description: NF21163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21163_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 428; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 23 - 490
Target Start/End: Original strand, 8105180 - 8105647
Alignment:
| Q |
23 |
tcttacttagacaatttatgttgtaaatcagaagccccaaactttgattttaaaccctaattttcttcccctccaaaattcagaatataaccttttaaat |
122 |
Q |
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| T |
8105180 |
tcttacttagacaatttatgttgtaaatcagaagccccaaactttaattttaaaccctaattttcttcccctccaaaattcagaatataaccttttaaat |
8105279 |
T |
|
| Q |
123 |
tcggatccaattttcttcccctcaagtttcaattattacagtctagaatccctaattttgttttccttttcccaatccttactccccaatccatgtgttc |
222 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
8105280 |
tcggattcaattttcttcccctcaagtttcaattattacagtccagaatccctaatttcgttttccttttcccaatccttactccccaatccatgtgttc |
8105379 |
T |
|
| Q |
223 |
atcttaattctctcatcctcttcatgttcttcatttaatatggaaacccagaaaatcaatgaaacccaaatcaaaacctctttctcaatcttgttgtgtg |
322 |
Q |
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| T |
8105380 |
atcttaattctctcatcctcttcgtgttcttcatttaatatggaaacccagaaaatcaatgaaactcaaatcaaaacctctttctcaatcttgttgtgtg |
8105479 |
T |
|
| Q |
323 |
tctgtgagtaataaaaatcaaaatcttagtttcctctcaatcaaccccacattcgccactattgtatgaaaaggaaagtggagaagatagttcatgtagg |
422 |
Q |
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| T |
8105480 |
tctctgagtaatcaaaatcaaaatcttagtttcctctcaatcaacctcacattcgccactattgtatggaaaggaaagtggagaagatagttcatgtagg |
8105579 |
T |
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| Q |
423 |
tctctcatttatgtggattttgtagcagattcaatgaagttgaatggtgtctttgtaggtccattact |
490 |
Q |
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| T |
8105580 |
tctctcatttatgtggattttgtagcagattcaatgaagttgaatggtgtctttgtaggtccattact |
8105647 |
T |
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Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 63 - 120
Target Start/End: Original strand, 21481535 - 21481592
Alignment:
| Q |
63 |
actttgattttaaaccctaattttcttcccctccaaaattcagaatataaccttttaa |
120 |
Q |
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||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21481535 |
actttaattctaaaccctaattttcttcccctccaaaattcagaatataaccttttaa |
21481592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 46 - 125
Target Start/End: Original strand, 51028391 - 51028470
Alignment:
| Q |
46 |
taaatcagaagccccaaactttgattttaaaccctaattttcttcccctccaaaattcagaatataaccttttaaattcg |
125 |
Q |
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||||||| || || |||||||||||| |||||||||||||||||||||| ||||||||| ||| ||||| |||||||||| |
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| T |
51028391 |
taaatcaaaaacctcaaactttgattctaaaccctaattttcttccccttcaaaattcataatttaaccatttaaattcg |
51028470 |
T |
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