View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21163_low_17 (Length: 494)
Name: NF21163_low_17
Description: NF21163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21163_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 410; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 1 - 454
Target Start/End: Complemental strand, 32195777 - 32195324
Alignment:
| Q |
1 |
ccattgtaaattttcctttgataacgctcgagaagtacaaattctttgcaatgtgaaacttggatcactaccaatttttgcactcaataagtcgttatta |
100 |
Q |
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||||||||||||||||||| |||||||||||| ||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
32195777 |
ccattgtaaattttcctttcataacgctcgaggagtacaaatgctttgcaatgtgaaacttggattactaccaatttttgcactcaataagtcgttatta |
32195678 |
T |
|
| Q |
101 |
ggaaaatatttagctttgagtacttgagcaactaacgattgagaattggtaattcaattccaagctttcttagctagcatagcaagattaagctaatata |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
32195677 |
ggaaaatatttagctttgagtacttgagcaactaacgattgagaattagtaattcaattccaagctttcttagctagcatagcaatattaagctaatata |
32195578 |
T |
|
| Q |
201 |
agtcttttatccccataggccataccccatattcatttgtccatcggtagtttatcacatgagatccaatgtatgccttgatttccttcttttttaaccc |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
32195577 |
agtcttttatccccataggccataccccatattcatttgtccatcggtagtttatcacatgagatccaatgtatgccatgatttccttcttttttaaccc |
32195478 |
T |
|
| Q |
301 |
caccaaaatgaattcatcatcgtttaaatgtcatcaccaagaaaagagggggtcaagaaaatactcatcatatatgttgaaattacttggaacaccgatt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||| |
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| T |
32195477 |
caccaaaatgaattcatcatcgtttaaatgtcgtcaccaagaaaagagggggtcaaggaaatactcatcatatatgctgaaattacttggaacaccgatt |
32195378 |
T |
|
| Q |
401 |
tgatacgcacttccctaccggctctagatagtgcctttccactccaagagttca |
454 |
Q |
| |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
32195377 |
tgatacgcacttccctaacggctctagatagtgcctttccactccaagagttca |
32195324 |
T |
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