View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21163_low_18 (Length: 492)
Name: NF21163_low_18
Description: NF21163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21163_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 374; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 10 - 474
Target Start/End: Complemental strand, 5822904 - 5822422
Alignment:
| Q |
10 |
catcatcacatacatttgtcaaagtcaatgagaatnnnnnnnnntt-acttccctaagaccaatacatgatataagaaaataactaagtgattcagttca |
108 |
Q |
| |
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||||||||||||||||||||||||||||||||||| || ||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5822904 |
catcatcacatacatttgtcaaagtcaatgagaataaaaaaaaatttacttccc-aagaccaatacatgatataagaaaataactaagtgattcagttca |
5822806 |
T |
|
| Q |
109 |
agtgggtaatgagctctactaaaagataa------------------cgttcaaataatttagtatatgtaacattagggctgctttgattttcaccttt |
190 |
Q |
| |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5822805 |
agtgggtaatgagctctactaaaagataaatcgttccggagaatccacgttcaaataatttagtatatgtaacattagggctgctttgattttcaccttt |
5822706 |
T |
|
| Q |
191 |
tatttttgttatacaataactaagctgcattcatgtgactctaggagtatttttgccggaactttgtgagaaacacaagaacaaccctcgtcgtgctaca |
290 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5822705 |
tatttttgttatacaataactaagctgcattcatgtgactctaggagtatttttgccggaactttgtgagaaacacaagaacaaccctcgtcgtgctaca |
5822606 |
T |
|
| Q |
291 |
atcgaacttactagctcaggagctgcacttggccctgcttcatcgatttcacaggatattgcgttagcaccagcatctgcacctacacctatttctgaga |
390 |
Q |
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|| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5822605 |
attgaacttactagctcaggagctgcacttggtcctgcttcatcgatttcacaggatattgcgttagcaccagcatctgcacctacacctatttctgaga |
5822506 |
T |
|
| Q |
391 |
tttcaaaggaaaatgagttatcactgaaacgtatcttctgcaaggggttaaataacactctcccatcagtctctagcatatgtg |
474 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5822505 |
tttcaaaggaaaatgagttatcactgaaacgtatcttctgcaaggggttaaataacactctcccatcagtctctagcatatgtg |
5822422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 200 - 375
Target Start/End: Original strand, 5829193 - 5829368
Alignment:
| Q |
200 |
tatacaataactaagctgcattcatgtgactctaggagtatttttgccggaactttgtgagaaacacaagaacaaccctcgtcgtgctacaatcgaactt |
299 |
Q |
| |
|
||||| |||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| |
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| T |
5829193 |
tatacgataactaagctgcattaatgtgacaacaggagtatttttgccggaactttgtgagaaacacaagaccaaccctcgtcgtgctacaattgaactt |
5829292 |
T |
|
| Q |
300 |
actagctcaggagctgcacttggccctgcttcatcgatttcacaggatattgcgttagcaccagcatctgcaccta |
375 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| ||||||||| |
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| T |
5829293 |
actagctcaggagctgcacttggtcctgcttcatcgatttcacaggatattgcgttagcacctgcagctgcaccta |
5829368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 233 - 374
Target Start/End: Complemental strand, 5832121 - 5831980
Alignment:
| Q |
233 |
aggagtatttttgccggaactttgtgagaaacacaagaacaaccctcgtcgtgctacaatcgaacttactagctcaggagctgcacttggccctgcttca |
332 |
Q |
| |
|
||||||||||||||| ||||| |||||||||||||||| ||||||||||||||||| |||| ||| ||||| ||||||||| ||||||| ||||| |
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| T |
5832121 |
aggagtatttttgccagaactatgtgagaaacacaagaccaaccctcgtcgtgctatggtcgagcttgtgagctccggagctgcatttggcccggcttct |
5832022 |
T |
|
| Q |
333 |
tcgatttcacaggatattgcgttagcaccagcatctgcacct |
374 |
Q |
| |
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|| ||||| |||| |||| ||||||||| ||| |||||||| |
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| T |
5832021 |
tcagtttcagaggacattgtgttagcacctgcagctgcacct |
5831980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 10 - 137
Target Start/End: Original strand, 5828973 - 5829102
Alignment:
| Q |
10 |
catcatcacatacatttgtcaaagtcaatgagaatnnnnnnnnn---ttacttccctaagaccaatacatgatataagaaaataactaagtgattcagtt |
106 |
Q |
| |
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|||||||||||||||||||||||||||||| |||| ||||||||| ||||| |||||||||||||||||||||| ||| |||||||||| |
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| T |
5828973 |
catcatcacatacatttgtcaaagtcaatgtgaataaaaaaaatattttacttccc-aagacaaatacatgatataagaaaataattaactgattcagtt |
5829071 |
T |
|
| Q |
107 |
caagtgggtaatgagctctactaaaagataa |
137 |
Q |
| |
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||||| ||||||||||| ||||| ||||||| |
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|
| T |
5829072 |
caagttggtaatgagctatactagaagataa |
5829102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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