View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21163_low_20 (Length: 491)
Name: NF21163_low_20
Description: NF21163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21163_low_20 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 297; Significance: 1e-167; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 83 - 475
Target Start/End: Complemental strand, 25796644 - 25796257
Alignment:
| Q |
83 |
ataacattgaattttctctatacttaaaactatcc-caattacatattgtgagcttttgtaattatatatcactaacaaactgggaattactcatggtct |
181 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||| |||||| |||||||||||||||||||| | ||||||||||| ||||| | |||| |
|
|
| T |
25796644 |
ataacattgaattttctctatacttaaaactatccacaaatacatactgtgagcttttgtaattatacaaaactaacaaactatgaatttcgcatgc--- |
25796548 |
T |
|
| Q |
182 |
catgctaaattagaaaaaatattacaaaatatacaatggtc-gagctaatatttttacaggagaattaaatgagaatcacaaagaaggtagcaggtaaag |
280 |
Q |
| |
|
| |||||||||||||||||||||||| |||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25796547 |
----caaaattagaaaaaatattacaaaatgtacaatggtccgatctaatatttttacaggagaattaaatgagaatcacaaagaaggtagcaggtaaag |
25796452 |
T |
|
| Q |
281 |
gttaaaaagagatgatgccaaggacagaaaccatgacacaaaagccataactgcagatatcctgtacctgcagcaaagctttatagggcaaaaagatcct |
380 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25796451 |
gttaaaaagagatgatgccaaggacagaaaccatgacacaaaagccataactgcagatatcctgtacctgcagcaaagctttatagggcaaaaagatcct |
25796352 |
T |
|
| Q |
381 |
tgagaatttagcaggagatctacaacactagctgttgaggcagctgctgctagtgtcagggttgataatacctgtagcagataaactagagttat |
475 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
25796351 |
tgagaatttagcaggagatctacaacactagctgttgaggcagctgctgctagtgtcagggttgataatacctgtagcaaataaactagagttat |
25796257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 18 - 86
Target Start/End: Original strand, 25796668 - 25796736
Alignment:
| Q |
18 |
ctcaatagtgcagtgatgtcaacnnnnnnngttttactcaaacaagctagggcatttcattcataataa |
86 |
Q |
| |
|
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25796668 |
ctcaatagtgccgtgatgtcaactttttttgttttactcaaacaagctagggcatttcattcataataa |
25796736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University