View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21163_low_23 (Length: 480)
Name: NF21163_low_23
Description: NF21163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21163_low_23 |
 | |
|
| [»] scaffold0179 (2 HSPs) |
| | |
|
Alignment Details
Target: scaffold0179 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: scaffold0179
Description:
Target: scaffold0179; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 18 - 289
Target Start/End: Original strand, 3467 - 3740
Alignment:
| Q |
18 |
ccatcatgtcccagaatctttatcattgccttctg-cacaaataactataaaagttatctcatgagggattaatttaaacaagtaca--gaagctcctgc |
114 |
Q |
| |
|
||||||| |||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
3467 |
ccatcatctcccagaatctttaccattgccttctgacacaaataactataaaagttatctcatgagggattaatttaaacaagtacacagaagctcctgc |
3566 |
T |
|
| Q |
115 |
tcgaaataatgttcaatagtcatcaatttttgccactatatcataaaaaagctacgaagaaacggagataaattctatgcaactttgtacagttttggaa |
214 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3567 |
tcgaaataatgttcaatagtcatcactttttgccactatatcataaagaagcta-gaagaaacggagataaattctatgcaactttgtacagttttggaa |
3665 |
T |
|
| Q |
215 |
gtgtagcaactcaacttgtgttatctgttctgattgtgaagatcaccagtcattggtatcacaaagaagctacgg |
289 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3666 |
gtgtagcaactcaacttgtgttatctgttctgattgtgaagatcaccagtcattggtatcacaaagaagctacgg |
3740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0179; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 322 - 463
Target Start/End: Original strand, 3773 - 3914
Alignment:
| Q |
322 |
gaaggttttacacaggtgacatatacccagatgcatattttatttggtgcgttttgaagttatctttcattattttcacagccgaatcttttatttcgtg |
421 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
3773 |
gaaggttttacacaggtgacaaatacccagatgcatattttatttggtgcgttttgaagttatctttcattattttcacagctgaatcttttatttcgtg |
3872 |
T |
|
| Q |
422 |
tcattgtttcacttattttggtggctaggagatgaaggtttt |
463 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3873 |
tcattgtttcacttattttggtggctaggagatgaaggtttt |
3914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 190 - 286
Target Start/End: Original strand, 50394320 - 50394416
Alignment:
| Q |
190 |
tatgcaactttgtacagttttggaagtgtagcaactcaacttgtgttatctgttctgattgtgaagatcaccagtcattggtatcacaaagaagcta |
286 |
Q |
| |
|
|||||||||||||| | ||||||||||||||||| || ||||| |||| ||| || | |||||||||||| |||||| |||| ||||||| |||| |
|
|
| T |
50394320 |
tatgcaactttgtataattttggaagtgtagcaagtccacttggattatatgtgcttaatgtgaagatcactggtcatttgtatgacaaagaggcta |
50394416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 190 - 284
Target Start/End: Original strand, 50385901 - 50385995
Alignment:
| Q |
190 |
tatgcaactttgtacagttttggaagtgtagcaactcaacttgtgttatctgttctgattgtgaagatcaccagtcattggtatcacaaagaagc |
284 |
Q |
| |
|
|||||||||||||| | ||||||||||||||||| || |||| |||| ||| || | |||||||||| | |||||| |||| |||||||||| |
|
|
| T |
50385901 |
tatgcaactttgtataattttggaagtgtagcaagtccccttggattatatgtgcttaatgtgaagatcgctggtcatttgtatgacaaagaagc |
50385995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University