View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21163_low_24 (Length: 463)

Name: NF21163_low_24
Description: NF21163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21163_low_24
NF21163_low_24
[»] chr6 (10 HSPs)
chr6 (209-450)||(13670095-13670336)
chr6 (209-450)||(13688277-13688518)
chr6 (209-448)||(13694395-13694634)
chr6 (9-143)||(13688584-13688718)
chr6 (38-143)||(13669924-13670029)
chr6 (247-442)||(13724850-13725045)
chr6 (253-442)||(13695526-13695715)
chr6 (41-143)||(13694700-13694802)
chr6 (77-139)||(13724680-13724742)
chr6 (77-137)||(13695350-13695410)
[»] chr7 (3 HSPs)
chr7 (303-395)||(30858611-30858703)
chr7 (334-395)||(30817181-30817242)
chr7 (253-397)||(30853289-30853433)
[»] chr8 (1 HSPs)
chr8 (342-383)||(35060848-35060889)


Alignment Details
Target: chr6 (Bit Score: 210; Significance: 1e-115; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 209 - 450
Target Start/End: Original strand, 13670095 - 13670336
Alignment:
Q  209 cacttctaacaatgtcttcctcattagcaacagctctaactcccattttccacacatcagcaataagctttgcattcgtaacttgatcggtccaaagtgg 308  Q
    ||||||||||||| ||||  |||| ||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  13670095 cacttctaacaatctctttttcatcagcaatagctctaactcccattttccaaacatcagcaataagctttgcattcgtaacttgatcggtccaaagtgg 13670194  T
Q  309 cattgcaatcaacggaacaccgatgctcaaagcttccaacgtcgagttccaaccacaatgtgtcacaaaacaacctaaagcttcatgtgttaacactagt 408  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  13670195 cattgcaatcaacggaacaccgatgctcaaagcttccaacgtcgagttccaaccacaatgtgtcacaaaacaacctaaagcttcatgtgttaacactaaa 13670294  T
Q  409 agttgtggacaccatgtcactattaaacctttctttgatgat 450  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  13670295 agttgtggacaccatgtcactattaaacctttctttgatgat 13670336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 209 - 450
Target Start/End: Complemental strand, 13688518 - 13688277
Alignment:
Q  209 cacttctaacaatgtcttcctcattagcaacagctctaactcccattttccacacatcagcaataagctttgcattcgtaacttgatcggtccaaagtgg 308  Q
    ||||||||||||| |||| ||||| |||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||    
T  13688518 cacttctaacaatctctttctcatcagcaacagctcttactcccattttccaaacatcagcaataagctttgcattcgtaacttgatcggtccaaagcgg 13688419  T
Q  309 cattgcaatcaacggaacaccgatgctcaaagcttccaacgtcgagttccaaccacaatgtgtcacaaaacaacctaaagcttcatgtgttaacactagt 408  Q
    |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13688418 cattgcaatcagtggaacaccgatgctcaaagcttccaacgtcgagttccaaccacaatgtgtcacaaaacaacctaaagcttcatgtgttaacactagt 13688319  T
Q  409 agttgtggacaccatgtcactattaaacctttctttgatgat 450  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  13688318 agttgtggacaccatgtcactattaaacctttctttgatgat 13688277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 209 - 448
Target Start/End: Complemental strand, 13694634 - 13694395
Alignment:
Q  209 cacttctaacaatgtcttcctcattagcaacagctctaactcccattttccacacatcagcaataagctttgcattcgtaacttgatcggtccaaagtgg 308  Q
    ||||||||||||| |||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| ||    
T  13694634 cacttctaacaatctctttctcatcagcaacagctctaactcccattttccacacatcagcaataaactttgcattcgtagcttgatcggtccaaagcgg 13694535  T
Q  309 cattgcaatcaacggaacaccgatgctcaaagcttccaacgtcgagttccaaccacaatgtgtcacaaaacaacctaaagcttcatgtgttaacactagt 408  Q
    |||||||||||| || ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||  | | |||||||||||||||||||  |    
T  13694534 cattgcaatcaatggtacaccaatgctcaaagcttccaacgtcgagttccaaccacagtgtgtcacaaaacatgccacagcttcatgtgttaacacttct 13694435  T
Q  409 agttgtggacaccatgtcactattaaacctttctttgatg 448  Q
    | ||||||||||||||||||||||||||| ||||| ||||    
T  13694434 aattgtggacaccatgtcactattaaaccattcttcgatg 13694395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 9 - 143
Target Start/End: Complemental strand, 13688718 - 13688584
Alignment:
Q  9 atcatcacacaccaattttatcaatttttatgcatctcaacattgagccaaagcagccacaaattcttcaatatttttatcagatcttccaccctcatca 108  Q
    ||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13688718 atcatcacacaccaattttgtcaattttaatgcatctcaacattgagccaaagcagccacaaattcttcaatatttttatcagatcttccaccctcatca 13688619  T
Q  109 acagaatccttagccaaattcttccatttcaaagc 143  Q
    ||||||  |||||||||||||||||||||||||||    
T  13688618 acagaactcttagccaaattcttccatttcaaagc 13688584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 38 - 143
Target Start/End: Original strand, 13669924 - 13670029
Alignment:
Q  38 atgcatctcaacattgagccaaagcagccacaaattcttcaatatttttatcagatcttccaccctcatcaacagaatccttagccaaattcttccattt 137  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13669924 atgcatctcaacattgagccaaagcagccacaaattcttcaatatttttatcagatcttccaccctcatcaacagaatccttagccaaattcttccattt 13670023  T
Q  138 caaagc 143  Q
    ||||||    
T  13670024 caaagc 13670029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 247 - 442
Target Start/End: Original strand, 13724850 - 13725045
Alignment:
Q  247 actcccattttccacacatcagcaataagctttgcattcgtaacttgatcggtccaaagtggcattgcaatcaacggaacaccgatgctcaaagcttcca 346  Q
    ||||| |||||||| |||||| |||||| ||||||||| || | |||||| |||||||||||||||||||||| | |||| || |  |||||||||||||    
T  13724850 actccaattttccaaacatcaacaataaactttgcatttgtgatttgatctgtccaaagtggcattgcaatcaccagaactccaacactcaaagcttcca 13724949  T
Q  347 acgtcgagttccaaccacaatgtgtcacaaaacaacctaaagcttcatgtgttaacactagtagttgtggacaccatgtcactattaaacctttct 442  Q
    | ||||||||||||||||||||||| ||||||||||| | ||||||||||||||||||| ||||||||| ||||||  | || |||||||||||||    
T  13724950 atgtcgagttccaaccacaatgtgttacaaaacaaccaacagcttcatgtgttaacacttgtagttgtgaacaccaattgacaattaaacctttct 13725045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 253 - 442
Target Start/End: Original strand, 13695526 - 13695715
Alignment:
Q  253 attttccacacatcagcaataagctttgcattcgtaacttgatcggtccaaagtggcattgcaatcaacggaacaccgatgctcaaagcttccaacgtcg 352  Q
    |||||||| |||||| |||||| ||||||||| |||| |||||| ||||||| |||||| ||||||| |||||| || |  |||||||||||||| || |    
T  13695526 attttccatacatcaacaataaactttgcatttgtaatttgatcagtccaaattggcatcgcaatcatcggaactcctaaactcaaagcttccaatgttg 13695625  T
Q  353 agttccaaccacaatgtgtcacaaaacaacctaaagcttcatgtgttaacactagtagttgtggacaccatgtcactattaaacctttct 442  Q
    | ||||||||||||||||| |||||||| || | |||||||||||  ||||||  ||||||| |||||||||||||||| ||||||||||    
T  13695626 aattccaaccacaatgtgttacaaaacatccaacagcttcatgtgcaaacacttctagttgttgacaccatgtcactatcaaacctttct 13695715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 41 - 143
Target Start/End: Complemental strand, 13694802 - 13694700
Alignment:
Q  41 catctcaacattgagccaaagcagccacaaattcttcaatatttttatcagatcttccaccctcatcaacagaatccttagccaaattcttccatttcaa 140  Q
    |||||||| |||||| ||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||  ||||||||||||||||||||||||    
T  13694802 catctcaatattgagtcaaagcagccacaaattcttctatattcttatcagatcttccaccctcatcaacagaactcttagccaaattcttccatttcaa 13694703  T
Q  141 agc 143  Q
    |||    
T  13694702 agc 13694700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 77 - 139
Target Start/End: Original strand, 13724680 - 13724742
Alignment:
Q  77 caatatttttatcagatcttccaccctcatcaacagaatccttagccaaattcttccatttca 139  Q
    ||||||| |||| ||| |||||| ||||| ||||||||  | |||||||||||||||||||||    
T  13724680 caatattcttatgagaacttccatcctcaccaacagaaatcctagccaaattcttccatttca 13724742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 77 - 137
Target Start/End: Original strand, 13695350 - 13695410
Alignment:
Q  77 caatatttttatcagatcttccaccctcatcaacagaatccttagccaaattcttccattt 137  Q
    ||||||| |||||||| ||||||||||||||||| || | ||| | || ||||||||||||    
T  13695350 caatattcttatcagaacttccaccctcatcaactgatttcttcgacacattcttccattt 13695410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 303 - 395
Target Start/End: Original strand, 30858611 - 30858703
Alignment:
Q  303 aagtggcattgcaatcaacggaacaccgatgctcaaagcttccaacgtcgagttccaaccacaatgtgtcacaaaacaacctaaagcttcatg 395  Q
    ||||||||||||||  |  ||||| || || |||||||||||||| || || ||||||||||||||||| |||||||| ||||  ||||||||    
T  30858611 aagtggcattgcaacaattggaactcctatactcaaagcttccaatgtggaattccaaccacaatgtgttacaaaacaccctattgcttcatg 30858703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 334 - 395
Target Start/End: Original strand, 30817181 - 30817242
Alignment:
Q  334 ctcaaagcttccaacgtcgagttccaaccacaatgtgtcacaaaacaacctaaagcttcatg 395  Q
    |||||||||||||| || || ||||||||||||||||| |||||||| ||||  ||||||||    
T  30817181 ctcaaagcttccaatgtggaattccaaccacaatgtgttacaaaacaccctattgcttcatg 30817242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 253 - 397
Target Start/End: Original strand, 30853289 - 30853433
Alignment:
Q  253 attttccacacatcagcaataagctttgcattcgtaacttgatcggtccaaagtggcattgcaatcaacggaacaccgatgctcaaagcttccaacgtcg 352  Q
    |||||||| |||||  |||||| ||||||||| ||   |||||| | |||  ||||||||||||  |  ||||| || | ||| | ||||||||| || |    
T  30853289 attttccaaacatcttcaataaactttgcattggtggattgatctgaccattgtggcattgcaacaattggaactcctaagctaatagcttccaatgtgg 30853388  T
Q  353 agttccaaccacaatgtgtcacaaaacaacctaaagcttcatgtg 397  Q
    | ||||||||||||||||| |||||||| |||| || ||||||||    
T  30853389 aattccaaccacaatgtgttacaaaacaccctatagattcatgtg 30853433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 342 - 383
Target Start/End: Complemental strand, 35060889 - 35060848
Alignment:
Q  342 ttccaacgtcgagttccaaccacaatgtgtcacaaaacaacc 383  Q
    |||||| |||||||||||||||||||| |||| |||||||||    
T  35060889 ttccaaagtcgagttccaaccacaatgagtcaaaaaacaacc 35060848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University