View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21163_low_26 (Length: 453)
Name: NF21163_low_26
Description: NF21163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21163_low_26 |
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Alignment Details
Target: chr8 (Bit Score: 366; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 18 - 427
Target Start/End: Original strand, 31385023 - 31385432
Alignment:
| Q |
18 |
atcttcaaccaccgattcattcaccgttattctctttatccacccatcttcacaaccagtataaactacacccaaagtagcatcgtataccaaatcttca |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
31385023 |
atcttcaaccaccgattcattcaccgttattctctttatccacccatcttcacaaccagtataaactacacccaaagcagcatcgtataccaaatcttca |
31385122 |
T |
|
| Q |
118 |
ggtccaagaacttgtccctctgcaactttttcagatcctaatcgcatgttcttgttaagtaaaggaacggttatagcggaccggtttagcttgtcgaggg |
217 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
31385123 |
ggtccaagaacttgtccctctgcagctttttcagatcctaatcgcatgttcttgttaagtaaaggaacggttatagcggaccggtttatcttgtcgaggg |
31385222 |
T |
|
| Q |
218 |
gaaaatgaaccggttccaatggttcgagccagtagagaaccgatgaggctataataactgggagaattatagctatgaatggtgtgaaaagagatgttct |
317 |
Q |
| |
|
|||||||||||||||||||||| ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| |
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| T |
31385223 |
gaaaatgaaccggttccaatgggtcgagccggtagagaaccgctgaggctataataactgggagaattatagctatgaacggtgtgaaaagagatgctct |
31385322 |
T |
|
| Q |
318 |
tgtttgagttcttgtgtttgtgtttgacttcgacatctttgaactggttaggtttagtggtggtggtgacttgttatgtttcaatagagttcaattgtat |
417 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
31385323 |
tgtttgagttcttgtatttgtgtttgacttcgacatctttgaactggttaggtttagtggtggtggtgatttgttatgtttcaatagagttcaattgtat |
31385422 |
T |
|
| Q |
418 |
ataaatacaa |
427 |
Q |
| |
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|||| ||||| |
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|
| T |
31385423 |
ataactacaa |
31385432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 18 - 427
Target Start/End: Original strand, 31370403 - 31370812
Alignment:
| Q |
18 |
atcttcaaccaccgattcattcaccgttattctctttatccacccatcttcacaaccagtataaactacacccaaagtagcatcgtataccaaatcttca |
117 |
Q |
| |
|
|||||||||||| ||| ||||||| | ||||||||| |||||||||||||||||||||||||| | | |||| ||| |||||||||||||||||| |
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| T |
31370403 |
atcttcaaccactgatccattcactgatattctcttaatccacccatcttcacaaccagtatacatcaaacccttgtcagcgtcgtataccaaatcttca |
31370502 |
T |
|
| Q |
118 |
ggtccaagaacttgtccctctgcaactttttcagatcctaatcgcatgttcttgttaagtaaaggaacggttatagcggaccggtttagcttgtcgaggg |
217 |
Q |
| |
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||||||| || || ||| |||||||| |||||||||||||||| |||||| |||||| |||||||| ||||||||| ||||||| || | || || || | |
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| T |
31370503 |
ggtccaaaaagttctccgtctgcaacgttttcagatcctaatctcatgttgttgttacgtaaaggagcggttatagtggaccgggtttgtttctcaagag |
31370602 |
T |
|
| Q |
218 |
gaaaatgaaccggttccaatggttcgagccagtagagaaccgatgaggctataataactgggagaattatagctatgaatggtgtgaaaagagatgttct |
317 |
Q |
| |
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| ||| ||||||||| || || ||||||| || || ||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| |
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| T |
31370603 |
ggaaaacaaccggttcgaaagggtcgagccggttgaaaaccgccgaggctataataactgggagaataatagctatgaacggtgtgaaaagagatgttct |
31370702 |
T |
|
| Q |
318 |
tgtttgagttcttgtgtttgtgtttgacttcgacatctttgaactggttaggtttagtggtggtggtgacttgttatgtttcaatagagttcaattgtat |
417 |
Q |
| |
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|| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| || ||||| |
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| T |
31370703 |
tggttgagttcttgtatttgtgtttgacttcgacatctttgaactggttaggtttagtggtggtggtgatttgttatgtttcaatagagttgaagtgtat |
31370802 |
T |
|
| Q |
418 |
ataaatacaa |
427 |
Q |
| |
|
|||| ||||| |
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|
| T |
31370803 |
ataactacaa |
31370812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 18 - 427
Target Start/End: Original strand, 31405536 - 31405945
Alignment:
| Q |
18 |
atcttcaaccaccgattcattcaccgttattctctttatccacccatcttcacaaccagtataaactacacccaaagtagcatcgtataccaaatcttca |
117 |
Q |
| |
|
|||||||||||| ||| ||||||| | ||||||||| |||||||||||||||||||||||||| | | |||| ||| |||||||||||||||||| |
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|
| T |
31405536 |
atcttcaaccactgatccattcactgatattctcttaatccacccatcttcacaaccagtatacatcaaacccttgtcagcgtcgtataccaaatcttca |
31405635 |
T |
|
| Q |
118 |
ggtccaagaacttgtccctctgcaactttttcagatcctaatcgcatgttcttgttaagtaaaggaacggttatagcggaccggtttagcttgtcgaggg |
217 |
Q |
| |
|
||||||| || || ||| |||||||| |||||||||||||||| |||||| |||||| |||||||| ||||||||| ||||||| || | || || || | |
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|
| T |
31405636 |
ggtccaaaaagttctccgtctgcaacgttttcagatcctaatctcatgttgttgttacgtaaaggagcggttatagtggaccgggtttgtttctcaagag |
31405735 |
T |
|
| Q |
218 |
gaaaatgaaccggttccaatggttcgagccagtagagaaccgatgaggctataataactgggagaattatagctatgaatggtgtgaaaagagatgttct |
317 |
Q |
| |
|
| ||| ||||||||| || || ||||||| ||||| ||||| |||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| |
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|
| T |
31405736 |
ggaaaacaaccggttcgaaagggtcgagccggtagaaaaccgctgaggctataataactgggagaataatagctatgaacggtgtgaaaagagatgttct |
31405835 |
T |
|
| Q |
318 |
tgtttgagttcttgtgtttgtgtttgacttcgacatctttgaactggttaggtttagtggtggtggtga-cttgttatgtttcaatagagttcaattgta |
416 |
Q |
| |
|
||||||||||||||||| ||||||||||| ||||||||| ||||| || |||||||||||||| || || ||||||||||||||||||||| |||| || |
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|
| T |
31405836 |
tgtttgagttcttgtgtctgtgtttgactccgacatcttggaact-gtaaggtttagtggtggaggagattttgttatgtttcaatagagttgaattcta |
31405934 |
T |
|
| Q |
417 |
tataaatacaa |
427 |
Q |
| |
|
||||| ||||| |
|
|
| T |
31405935 |
tataactacaa |
31405945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 18 - 66
Target Start/End: Complemental strand, 31932830 - 31932782
Alignment:
| Q |
18 |
atcttcaaccaccgattcattcaccgttattctctttatccacccatct |
66 |
Q |
| |
|
|||||||||||||||||||||||| || ||||||||||||||||||||| |
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|
| T |
31932830 |
atcttcaaccaccgattcattcactgtgattctctttatccacccatct |
31932782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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