View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21163_low_27 (Length: 451)

Name: NF21163_low_27
Description: NF21163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21163_low_27
NF21163_low_27
[»] chr7 (21 HSPs)
chr7 (309-372)||(19934317-19934380)
chr7 (309-372)||(19965456-19965519)
chr7 (394-427)||(48629012-48629045)
chr7 (80-116)||(42276092-42276128)
chr7 (396-427)||(47281422-47281453)
chr7 (397-427)||(31684401-31684431)
chr7 (397-427)||(39033876-39033906)
chr7 (397-427)||(43968555-43968585)
chr7 (398-427)||(11476461-11476490)
chr7 (398-427)||(47218961-47218990)
chr7 (399-427)||(2960546-2960574)
chr7 (399-427)||(11476852-11476880)
chr7 (80-116)||(27331061-27331097)
chr7 (399-427)||(27772982-27773010)
chr7 (399-427)||(31684040-31684068)
chr7 (80-116)||(33212043-33212079)
chr7 (80-116)||(42598242-42598278)
chr7 (80-116)||(44496837-44496873)
chr7 (399-427)||(45723397-45723425)
chr7 (399-427)||(47119837-47119865)
chr7 (399-427)||(47294197-47294225)
[»] chr3 (23 HSPs)
chr3 (392-427)||(21656725-21656760)
chr3 (397-427)||(19664356-19664386)
chr3 (80-118)||(45657804-45657842)
chr3 (397-427)||(50287381-50287411)
chr3 (398-427)||(1687858-1687887)
chr3 (398-427)||(20760367-20760396)
chr3 (398-427)||(21564341-21564370)
chr3 (69-114)||(30251004-30251048)
chr3 (393-426)||(31122870-31122903)
chr3 (398-427)||(33151932-33151961)
chr3 (399-427)||(1016890-1016918)
chr3 (399-427)||(1448641-1448669)
chr3 (399-427)||(8097228-8097256)
chr3 (80-116)||(12094423-12094459)
chr3 (398-426)||(20813738-20813766)
chr3 (399-427)||(36315268-36315296)
chr3 (399-427)||(38446294-38446322)
chr3 (84-116)||(40159876-40159908)
chr3 (399-427)||(44152517-44152545)
chr3 (399-427)||(44152880-44152908)
chr3 (80-116)||(48179087-48179123)
chr3 (80-116)||(49761220-49761256)
chr3 (399-427)||(49799017-49799045)
[»] chr1 (18 HSPs)
chr1 (394-427)||(19274765-19274798)
chr1 (84-116)||(740994-741026)
chr1 (395-427)||(16508195-16508227)
chr1 (80-116)||(45042262-45042298)
chr1 (397-427)||(6711678-6711708)
chr1 (398-427)||(26549204-26549233)
chr1 (398-427)||(36157973-36158002)
chr1 (398-427)||(37217103-37217132)
chr1 (390-427)||(45670753-45670790)
chr1 (398-427)||(48802236-48802265)
chr1 (80-116)||(1689392-1689428)
chr1 (84-116)||(15182621-15182653)
chr1 (399-427)||(24204377-24204405)
chr1 (399-427)||(25800848-25800876)
chr1 (399-427)||(28425269-28425297)
chr1 (399-427)||(34971275-34971303)
chr1 (399-427)||(46051657-46051685)
chr1 (399-427)||(49594868-49594896)
[»] chr8 (14 HSPs)
chr8 (391-427)||(24430868-24430904)
chr8 (80-116)||(34494672-34494708)
chr8 (397-427)||(5720425-5720455)
chr8 (397-427)||(35443518-35443548)
chr8 (398-427)||(8137338-8137367)
chr8 (398-427)||(15846954-15846983)
chr8 (398-427)||(43468908-43468937)
chr8 (399-427)||(9884673-9884701)
chr8 (399-427)||(24430477-24430505)
chr8 (80-116)||(31806300-31806336)
chr8 (399-427)||(33652048-33652076)
chr8 (395-427)||(38107306-38107338)
chr8 (391-427)||(38633608-38633644)
chr8 (399-427)||(41536433-41536461)
[»] chr6 (7 HSPs)
chr6 (391-427)||(12613117-12613153)
chr6 (398-427)||(2598005-2598034)
chr6 (394-427)||(17943243-17943276)
chr6 (395-427)||(2643927-2643959)
chr6 (399-427)||(12626843-12626871)
chr6 (80-116)||(16352183-16352219)
chr6 (399-427)||(26393305-26393333)
[»] chr5 (26 HSPs)
chr5 (395-427)||(14717417-14717449)
chr5 (395-426)||(16751958-16751989)
chr5 (397-427)||(8215715-8215745)
chr5 (397-427)||(11935292-11935322)
chr5 (397-427)||(17002452-17002482)
chr5 (397-427)||(35861501-35861531)
chr5 (397-426)||(3352298-3352327)
chr5 (398-427)||(4016169-4016198)
chr5 (394-427)||(6331190-6331223)
chr5 (398-427)||(6600432-6600461)
chr5 (398-427)||(20408740-20408769)
chr5 (398-427)||(26035271-26035300)
chr5 (398-427)||(38964019-38964048)
chr5 (80-116)||(2456027-2456063)
chr5 (80-116)||(5996668-5996704)
chr5 (399-427)||(6252179-6252207)
chr5 (80-116)||(6529020-6529056)
chr5 (399-427)||(11001024-11001052)
chr5 (80-116)||(13547268-13547304)
chr5 (391-427)||(16095858-16095894)
chr5 (399-427)||(19659407-19659435)
chr5 (399-427)||(26593576-26593604)
chr5 (391-427)||(27115997-27116033)
chr5 (399-427)||(33003248-33003276)
chr5 (395-427)||(33760766-33760798)
chr5 (80-116)||(36416096-36416132)
[»] chr4 (29 HSPs)
chr4 (391-427)||(2055094-2055130)
chr4 (69-116)||(40755922-40755968)
chr4 (397-427)||(5227597-5227627)
chr4 (397-427)||(28264850-28264880)
chr4 (397-427)||(30141373-30141403)
chr4 (398-427)||(17847420-17847449)
chr4 (398-427)||(19169062-19169091)
chr4 (398-427)||(19496442-19496471)
chr4 (394-427)||(20534402-20534435)
chr4 (398-427)||(22298335-22298364)
chr4 (81-114)||(23758353-23758386)
chr4 (398-427)||(26017268-26017297)
chr4 (398-427)||(28160251-28160280)
chr4 (398-427)||(42273647-42273676)
chr4 (398-427)||(50276431-50276460)
chr4 (398-426)||(8882311-8882339)
chr4 (80-116)||(9472547-9472583)
chr4 (84-116)||(12241059-12241091)
chr4 (399-427)||(17847003-17847031)
chr4 (399-427)||(28264489-28264517)
chr4 (399-427)||(33173926-33173954)
chr4 (84-116)||(33820374-33820406)
chr4 (399-427)||(36444588-36444616)
chr4 (80-116)||(43608077-43608113)
chr4 (391-427)||(48552013-48552049)
chr4 (399-427)||(51371372-51371400)
chr4 (80-116)||(53357111-53357147)
chr4 (80-116)||(53662462-53662498)
chr4 (399-427)||(56555440-56555468)
[»] chr2 (19 HSPs)
chr2 (391-427)||(23671710-23671746)
chr2 (395-427)||(37838504-37838536)
chr2 (396-427)||(2057132-2057163)
chr2 (396-427)||(27328791-27328822)
chr2 (396-427)||(37654301-37654332)
chr2 (391-424)||(22066567-22066600)
chr2 (398-427)||(28650331-28650360)
chr2 (398-427)||(38750863-38750892)
chr2 (399-427)||(920839-920867)
chr2 (80-116)||(1876321-1876357)
chr2 (399-427)||(2094317-2094345)
chr2 (399-427)||(7297171-7297199)
chr2 (84-116)||(16754397-16754429)
chr2 (80-116)||(17159567-17159603)
chr2 (395-427)||(27328399-27328431)
chr2 (84-116)||(28277805-28277837)
chr2 (80-116)||(34372848-34372884)
chr2 (399-427)||(36211254-36211282)
chr2 (399-427)||(37732099-37732127)
[»] scaffold0117 (1 HSPs)
scaffold0117 (396-427)||(14492-14523)
[»] scaffold1562 (1 HSPs)
scaffold1562 (394-424)||(780-810)
[»] scaffold1158 (1 HSPs)
scaffold1158 (394-424)||(1783-1813)
[»] scaffold1986 (1 HSPs)
scaffold1986 (399-427)||(293-321)
[»] scaffold0717 (1 HSPs)
scaffold0717 (394-426)||(2054-2086)
[»] scaffold0004 (1 HSPs)
scaffold0004 (395-427)||(219093-219125)


Alignment Details
Target: chr7 (Bit Score: 44; Significance: 7e-16; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 309 - 372
Target Start/End: Original strand, 19934317 - 19934380
Alignment:
Q  309 ggattaaggttagggttttgagttttgaaatgacacgctcaattccaaatgaagataggattag 372  Q
    |||||| ||||||||||||||||||||||||| |||| |||||| ||| |||||||||||||||    
T  19934317 ggattagggttagggttttgagttttgaaatgtcacgatcaatttcaactgaagataggattag 19934380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 309 - 372
Target Start/End: Original strand, 19965456 - 19965519
Alignment:
Q  309 ggattaaggttagggttttgagttttgaaatgacacgctcaattccaaatgaagataggattag 372  Q
    |||||| ||||||||||||||||||||||||| |||| |||||| ||| |||||||||||||||    
T  19965456 ggattagggttagggttttgagttttgaaatgtcacgatcaatttcaactgaagataggattag 19965519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 394 - 427
Target Start/End: Complemental strand, 48629045 - 48629012
Alignment:
Q  394 tatataggtcaaatgcatctaaaggtcctttaag 427  Q
    ||||||||||||||||||||||||||||||||||    
T  48629045 tatataggtcaaatgcatctaaaggtcctttaag 48629012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 80 - 116
Target Start/End: Complemental strand, 42276128 - 42276092
Alignment:
Q  80 aaaattgttagaaaatagttgtataaatatcatttct 116  Q
    ||||||||||||||||||||||| |||||||||||||    
T  42276128 aaaattgttagaaaatagttgtacaaatatcatttct 42276092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 396 - 427
Target Start/End: Complemental strand, 47281453 - 47281422
Alignment:
Q  396 tataggtcaaatgcatctaaaggtcctttaag 427  Q
    ||||||||||||||||||||||||||||||||    
T  47281453 tataggtcaaatgcatctaaaggtcctttaag 47281422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 397 - 427
Target Start/End: Complemental strand, 31684431 - 31684401
Alignment:
Q  397 ataggtcaaatgcatctaaaggtcctttaag 427  Q
    |||||||||||||||||||||||||||||||    
T  31684431 ataggtcaaatgcatctaaaggtcctttaag 31684401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 397 - 427
Target Start/End: Original strand, 39033876 - 39033906
Alignment:
Q  397 ataggtcaaatgcatctaaaggtcctttaag 427  Q
    |||||||||||||||||||||||||||||||    
T  39033876 ataggtcaaatgcatctaaaggtcctttaag 39033906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 397 - 427
Target Start/End: Complemental strand, 43968585 - 43968555
Alignment:
Q  397 ataggtcaaatgcatctaaaggtcctttaag 427  Q
    |||||||||||||||||||||||||||||||    
T  43968585 ataggtcaaatgcatctaaaggtcctttaag 43968555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 398 - 427
Target Start/End: Original strand, 11476461 - 11476490
Alignment:
Q  398 taggtcaaatgcatctaaaggtcctttaag 427  Q
    ||||||||||||||||||||||||||||||    
T  11476461 taggtcaaatgcatctaaaggtcctttaag 11476490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 398 - 427
Target Start/End: Original strand, 47218961 - 47218990
Alignment:
Q  398 taggtcaaatgcatctaaaggtcctttaag 427  Q
    ||||||||||||||||||||||||||||||    
T  47218961 taggtcaaatgcatctaaaggtcctttaag 47218990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 399 - 427
Target Start/End: Original strand, 2960546 - 2960574
Alignment:
Q  399 aggtcaaatgcatctaaaggtcctttaag 427  Q
    |||||||||||||||||||||||||||||    
T  2960546 aggtcaaatgcatctaaaggtcctttaag 2960574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 399 - 427
Target Start/End: Complemental strand, 11476880 - 11476852
Alignment:
Q  399 aggtcaaatgcatctaaaggtcctttaag 427  Q
    |||||||||||||||||||||||||||||    
T  11476880 aggtcaaatgcatctaaaggtcctttaag 11476852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 80 - 116
Target Start/End: Original strand, 27331061 - 27331097
Alignment:
Q  80 aaaattgttagaaaatagttgtataaatatcatttct 116  Q
    |||||||||||||||||||| || |||||||||||||    
T  27331061 aaaattgttagaaaatagttatacaaatatcatttct 27331097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 399 - 427
Target Start/End: Original strand, 27772982 - 27773010
Alignment:
Q  399 aggtcaaatgcatctaaaggtcctttaag 427  Q
    |||||||||||||||||||||||||||||    
T  27772982 aggtcaaatgcatctaaaggtcctttaag 27773010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 399 - 427
Target Start/End: Original strand, 31684040 - 31684068
Alignment:
Q  399 aggtcaaatgcatctaaaggtcctttaag 427  Q
    |||||||||||||||||||||||||||||    
T  31684040 aggtcaaatgcatctaaaggtcctttaag 31684068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 80 - 116
Target Start/End: Complemental strand, 33212079 - 33212043
Alignment:
Q  80 aaaattgttagaaaatagttgtataaatatcatttct 116  Q
    |||||||||||||||| |||||| |||||||||||||    
T  33212079 aaaattgttagaaaatggttgtacaaatatcatttct 33212043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 80 - 116
Target Start/End: Original strand, 42598242 - 42598278
Alignment:
Q  80 aaaattgttagaaaatagttgtataaatatcatttct 116  Q
    |||||||||| |||||||||||| |||||||||||||    
T  42598242 aaaattgttaaaaaatagttgtacaaatatcatttct 42598278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 80 - 116
Target Start/End: Original strand, 44496837 - 44496873
Alignment:
Q  80 aaaattgttagaaaatagttgtataaatatcatttct 116  Q
    |||||||||||||||||||| || |||||||||||||    
T  44496837 aaaattgttagaaaatagttatacaaatatcatttct 44496873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 399 - 427
Target Start/End: Original strand, 45723397 - 45723425
Alignment:
Q  399 aggtcaaatgcatctaaaggtcctttaag 427  Q
    |||||||||||||||||||||||||||||    
T  45723397 aggtcaaatgcatctaaaggtcctttaag 45723425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 399 - 427
Target Start/End: Original strand, 47119837 - 47119865
Alignment:
Q  399 aggtcaaatgcatctaaaggtcctttaag 427  Q
    |||||||||||||||||||||||||||||    
T  47119837 aggtcaaatgcatctaaaggtcctttaag 47119865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 399 - 427
Target Start/End: Original strand, 47294197 - 47294225
Alignment:
Q  399 aggtcaaatgcatctaaaggtcctttaag 427  Q
    |||||||||||||||||||||||||||||    
T  47294197 aggtcaaatgcatctaaaggtcctttaag 47294225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 392 - 427
Target Start/End: Complemental strand, 21656760 - 21656725
Alignment:
Q  392 attatataggtcaaatgcatctaaaggtcctttaag 427  Q
    ||||||||||||||||||||||||||||||||||||    
T  21656760 attatataggtcaaatgcatctaaaggtcctttaag 21656725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 397 - 427
Target Start/End: Original strand, 19664356 - 19664386
Alignment:
Q  397 ataggtcaaatgcatctaaaggtcctttaag 427  Q
    |||||||||||||||||||||||||||||||    
T  19664356 ataggtcaaatgcatctaaaggtcctttaag 19664386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 80 - 118
Target Start/End: Original strand, 45657804 - 45657842
Alignment:
Q  80 aaaattgttagaaaatagttgtataaatatcatttctat 118  Q
    ||||||||||||||||  |||||||||||||||||||||    
T  45657804 aaaattgttagaaaatgattgtataaatatcatttctat 45657842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 397 - 427
Target Start/End: Original strand, 50287381 - 50287411
Alignment:
Q  397 ataggtcaaatgcatctaaaggtcctttaag 427  Q
    |||||||||||||||||||||||||||||||    
T  50287381 ataggtcaaatgcatctaaaggtcctttaag 50287411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 398 - 427
Target Start/End: Complemental strand, 1687887 - 1687858
Alignment:
Q  398 taggtcaaatgcatctaaaggtcctttaag 427  Q
    ||||||||||||||||||||||||||||||    
T  1687887 taggtcaaatgcatctaaaggtcctttaag 1687858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 398 - 427
Target Start/End: Complemental strand, 20760396 - 20760367
Alignment:
Q  398 taggtcaaatgcatctaaaggtcctttaag 427  Q
    ||||||||||||||||||||||||||||||    
T  20760396 taggtcaaatgcatctaaaggtcctttaag 20760367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 398 - 427
Target Start/End: Original strand, 21564341 - 21564370
Alignment:
Q  398 taggtcaaatgcatctaaaggtcctttaag 427  Q
    ||||||||||||||||||||||||||||||    
T  21564341 taggtcaaatgcatctaaaggtcctttaag 21564370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 69 - 114
Target Start/End: Original strand, 30251004 - 30251048
Alignment:
Q  69 aaattatcaacaaaattgttagaaaatagttgtataaatatcattt 114  Q
    |||||||||| |||||||||||||||| |||||| |||||||||||    
T  30251004 aaattatcaa-aaaattgttagaaaatggttgtacaaatatcattt 30251048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 393 - 426
Target Start/End: Complemental strand, 31122903 - 31122870
Alignment:
Q  393 ttatataggtcaaatgcatctaaaggtcctttaa 426  Q
    |||| |||||||||||||||||||||||||||||    
T  31122903 ttatttaggtcaaatgcatctaaaggtcctttaa 31122870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 398 - 427
Target Start/End: Complemental strand, 33151961 - 33151932
Alignment:
Q  398 taggtcaaatgcatctaaaggtcctttaag 427  Q
    ||||||||||||||||||||||||||||||    
T  33151961 taggtcaaatgcatctaaaggtcctttaag 33151932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 399 - 427
Target Start/End: Original strand, 1016890 - 1016918
Alignment:
Q  399 aggtcaaatgcatctaaaggtcctttaag 427  Q
    |||||||||||||||||||||||||||||    
T  1016890 aggtcaaatgcatctaaaggtcctttaag 1016918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 399 - 427
Target Start/End: Original strand, 1448641 - 1448669
Alignment:
Q  399 aggtcaaatgcatctaaaggtcctttaag 427  Q
    |||||||||||||||||||||||||||||    
T  1448641 aggtcaaatgcatctaaaggtcctttaag 1448669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 399 - 427
Target Start/End: Complemental strand, 8097256 - 8097228
Alignment:
Q  399 aggtcaaatgcatctaaaggtcctttaag 427  Q
    |||||||||||||||||||||||||||||    
T  8097256 aggtcaaatgcatctaaaggtcctttaag 8097228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 80 - 116
Target Start/End: Original strand, 12094423 - 12094459
Alignment:
Q  80 aaaattgttagaaaatagttgtataaatatcatttct 116  Q
    |||||||| | ||||||||||||||||||||||||||    
T  12094423 aaaattgtcataaaatagttgtataaatatcatttct 12094459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 398 - 426
Target Start/End: Complemental strand, 20813766 - 20813738
Alignment:
Q  398 taggtcaaatgcatctaaaggtcctttaa 426  Q
    |||||||||||||||||||||||||||||    
T  20813766 taggtcaaatgcatctaaaggtcctttaa 20813738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 399 - 427
Target Start/End: Complemental strand, 36315296 - 36315268
Alignment:
Q  399 aggtcaaatgcatctaaaggtcctttaag 427  Q
    |||||||||||||||||||||||||||||    
T  36315296 aggtcaaatgcatctaaaggtcctttaag 36315268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 399 - 427
Target Start/End: Original strand, 38446294 - 38446322
Alignment:
Q  399 aggtcaaatgcatctaaaggtcctttaag 427  Q
    |||||||||||||||||||||||||||||    
T  38446294 aggtcaaatgcatctaaaggtcctttaag 38446322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 84 - 116
Target Start/End: Original strand, 40159876 - 40159908
Alignment:
Q  84 ttgttagaaaatagttgtataaatatcatttct 116  Q
    ||||||||||||||||||| |||||||||||||    
T  40159876 ttgttagaaaatagttgtacaaatatcatttct 40159908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 399 - 427
Target Start/End: Original strand, 44152517 - 44152545
Alignment:
Q  399 aggtcaaatgcatctaaaggtcctttaag 427  Q
    |||||||||||||||||||||||||||||    
T  44152517 aggtcaaatgcatctaaaggtcctttaag 44152545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 399 - 427
Target Start/End: Complemental strand, 44152908 - 44152880
Alignment:
Q  399 aggtcaaatgcatctaaaggtcctttaag 427  Q
    |||||||||||||||||||||||||||||    
T  44152908 aggtcaaatgcatctaaaggtcctttaag 44152880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 80 - 116
Target Start/End: Original strand, 48179087 - 48179123
Alignment:
Q  80 aaaattgttagaaaatagttgtataaatatcatttct 116  Q
    |||| |||||||||||||||||| |||||||||||||    
T  48179087 aaaactgttagaaaatagttgtacaaatatcatttct 48179123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 80 - 116
Target Start/End: Original strand, 49761220 - 49761256
Alignment:
Q  80 aaaattgttagaaaatagttgtataaatatcatttct 116  Q
    |||||||||||||||| |||||| |||||||||||||    
T  49761220 aaaattgttagaaaatggttgtacaaatatcatttct 49761256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 399 - 427
Target Start/End: Original strand, 49799017 - 49799045
Alignment:
Q  399 aggtcaaatgcatctaaaggtcctttaag 427  Q
    |||||||||||||||||||||||||||||    
T  49799017 aggtcaaatgcatctaaaggtcctttaag 49799045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 394 - 427
Target Start/End: Complemental strand, 19274798 - 19274765
Alignment:
Q  394 tatataggtcaaatgcatctaaaggtcctttaag 427  Q
    ||||||||||||||||||||||||||||||||||    
T  19274798 tatataggtcaaatgcatctaaaggtcctttaag 19274765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 84 - 116
Target Start/End: Original strand, 740994 - 741026
Alignment:
Q  84 ttgttagaaaatagttgtataaatatcatttct 116  Q
    |||||||||||||||||||||||||||||||||    
T  740994 ttgttagaaaatagttgtataaatatcatttct 741026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 395 - 427
Target Start/End: Complemental strand, 16508227 - 16508195
Alignment:
Q  395 atataggtcaaatgcatctaaaggtcctttaag 427  Q
    |||||||||||||||||||||||||||||||||    
T  16508227 atataggtcaaatgcatctaaaggtcctttaag 16508195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 80 - 116
Target Start/End: Complemental strand, 45042298 - 45042262
Alignment:
Q  80 aaaattgttagaaaatagttgtataaatatcatttct 116  Q
    ||||||||||||||||||||||| |||||||||||||    
T  45042298 aaaattgttagaaaatagttgtacaaatatcatttct 45042262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 397 - 427
Target Start/End: Complemental strand, 6711708 - 6711678
Alignment:
Q  397 ataggtcaaatgcatctaaaggtcctttaag 427  Q
    |||||||||||||||||||||||||||||||    
T  6711708 ataggtcaaatgcatctaaaggtcctttaag 6711678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 398 - 427
Target Start/End: Original strand, 26549204 - 26549233
Alignment:
Q  398 taggtcaaatgcatctaaaggtcctttaag 427  Q
    ||||||||||||||||||||||||||||||    
T  26549204 taggtcaaatgcatctaaaggtcctttaag 26549233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 398 - 427
Target Start/End: Complemental strand, 36158002 - 36157973
Alignment:
Q  398 taggtcaaatgcatctaaaggtcctttaag 427  Q
    ||||||||||||||||||||||||||||||    
T  36158002 taggtcaaatgcatctaaaggtcctttaag 36157973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 398 - 427
Target Start/End: Complemental strand, 37217132 - 37217103
Alignment:
Q  398 taggtcaaatgcatctaaaggtcctttaag 427  Q
    ||||||||||||||||||||||||||||||    
T  37217132 taggtcaaatgcatctaaaggtcctttaag 37217103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 390 - 427
Target Start/End: Complemental strand, 45670790 - 45670753
Alignment:
Q  390 ttattatataggtcaaatgcatctaaaggtcctttaag 427  Q
    ||||| |||||| |||||||||||||||||||||||||    
T  45670790 ttattttataggacaaatgcatctaaaggtcctttaag 45670753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 398 - 427
Target Start/End: Original strand, 48802236 - 48802265
Alignment:
Q  398 taggtcaaatgcatctaaaggtcctttaag 427  Q
    ||||||||||||||||||||||||||||||    
T  48802236 taggtcaaatgcatctaaaggtcctttaag 48802265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 80 - 116
Target Start/End: Complemental strand, 1689428 - 1689392
Alignment:
Q  80 aaaattgttagaaaatagttgtataaatatcatttct 116  Q
    |||||||||| |||||||||||| |||||||||||||    
T  1689428 aaaattgttataaaatagttgtacaaatatcatttct 1689392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 84 - 116
Target Start/End: Original strand, 15182621 - 15182653
Alignment:
Q  84 ttgttagaaaatagttgtataaatatcatttct 116  Q
    ||||||||||||||||||| |||||||||||||    
T  15182621 ttgttagaaaatagttgtacaaatatcatttct 15182653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 399 - 427
Target Start/End: Original strand, 24204377 - 24204405
Alignment:
Q  399 aggtcaaatgcatctaaaggtcctttaag 427  Q
    |||||||||||||||||||||||||||||    
T  24204377 aggtcaaatgcatctaaaggtcctttaag 24204405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 399 - 427
Target Start/End: Complemental strand, 25800876 - 25800848
Alignment:
Q  399 aggtcaaatgcatctaaaggtcctttaag 427  Q
    |||||||||||||||||||||||||||||    
T  25800876 aggtcaaatgcatctaaaggtcctttaag 25800848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 399 - 427
Target Start/End: Original strand, 28425269 - 28425297
Alignment:
Q  399 aggtcaaatgcatctaaaggtcctttaag 427  Q
    |||||||||||||||||||||||||||||    
T  28425269 aggtcaaatgcatctaaaggtcctttaag 28425297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 399 - 427
Target Start/End: Complemental strand, 34971303 - 34971275
Alignment:
Q  399 aggtcaaatgcatctaaaggtcctttaag 427  Q
    |||||||||||||||||||||||||||||    
T  34971303 aggtcaaatgcatctaaaggtcctttaag 34971275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 399 - 427
Target Start/End: Complemental strand, 46051685 - 46051657
Alignment:
Q  399 aggtcaaatgcatctaaaggtcctttaag 427  Q
    |||||||||||||||||||||||||||||    
T  46051685 aggtcaaatgcatctaaaggtcctttaag 46051657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 399 - 427
Target Start/End: Original strand, 49594868 - 49594896
Alignment:
Q  399 aggtcaaatgcatctaaaggtcctttaag 427  Q
    |||||||||||||||||||||||||||||    
T  49594868 aggtcaaatgcatctaaaggtcctttaag 49594896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 391 - 427
Target Start/End: Complemental strand, 24430904 - 24430868
Alignment:
Q  391 tattatataggtcaaatgcatctaaaggtcctttaag 427  Q
    |||| ||||||||||||||||||||||||||||||||    
T  24430904 tattttataggtcaaatgcatctaaaggtcctttaag 24430868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 80 - 116
Target Start/End: Original strand, 34494672 - 34494708
Alignment:
Q  80 aaaattgttagaaaatagttgtataaatatcatttct 116  Q
    ||||||||||||||||||||||| |||||||||||||    
T  34494672 aaaattgttagaaaatagttgtacaaatatcatttct 34494708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 397 - 427
Target Start/End: Original strand, 5720425 - 5720455
Alignment:
Q  397 ataggtcaaatgcatctaaaggtcctttaag 427  Q
    |||||||||||||||||||||||||||||||    
T  5720425 ataggtcaaatgcatctaaaggtcctttaag 5720455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 397 - 427
Target Start/End: Complemental strand, 35443548 - 35443518
Alignment:
Q  397 ataggtcaaatgcatctaaaggtcctttaag 427  Q
    |||||||||||||||||||||||||||||||    
T  35443548 ataggtcaaatgcatctaaaggtcctttaag 35443518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 398 - 427
Target Start/End: Complemental strand, 8137367 - 8137338
Alignment:
Q  398 taggtcaaatgcatctaaaggtcctttaag 427  Q
    ||||||||||||||||||||||||||||||    
T  8137367 taggtcaaatgcatctaaaggtcctttaag 8137338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 398 - 427
Target Start/End: Original strand, 15846954 - 15846983
Alignment:
Q  398 taggtcaaatgcatctaaaggtcctttaag 427  Q
    ||||||||||||||||||||||||||||||    
T  15846954 taggtcaaatgcatctaaaggtcctttaag 15846983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 398 - 427
Target Start/End: Original strand, 43468908 - 43468937
Alignment:
Q  398 taggtcaaatgcatctaaaggtcctttaag 427  Q
    ||||||||||||||||||||||||||||||    
T  43468908 taggtcaaatgcatctaaaggtcctttaag 43468937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 399 - 427
Target Start/End: Original strand, 9884673 - 9884701
Alignment:
Q  399 aggtcaaatgcatctaaaggtcctttaag 427  Q
    |||||||||||||||||||||||||||||    
T  9884673 aggtcaaatgcatctaaaggtcctttaag 9884701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 399 - 427
Target Start/End: Original strand, 24430477 - 24430505
Alignment:
Q  399 aggtcaaatgcatctaaaggtcctttaag 427  Q
    |||||||||||||||||||||||||||||    
T  24430477 aggtcaaatgcatctaaaggtcctttaag 24430505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 80 - 116
Target Start/End: Complemental strand, 31806336 - 31806300
Alignment:
Q  80 aaaattgttagaaaatagttgtataaatatcatttct 116  Q
    |||||||||||||||| |||||| |||||||||||||    
T  31806336 aaaattgttagaaaatggttgtacaaatatcatttct 31806300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 399 - 427
Target Start/End: Complemental strand, 33652076 - 33652048
Alignment:
Q  399 aggtcaaatgcatctaaaggtcctttaag 427  Q
    |||||||||||||||||||||||||||||    
T  33652076 aggtcaaatgcatctaaaggtcctttaag 33652048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 395 - 427
Target Start/End: Complemental strand, 38107338 - 38107306
Alignment:
Q  395 atataggtcaaatgcatctaaaggtcctttaag 427  Q
    |||||||||||||||||||||| ||||||||||    
T  38107338 atataggtcaaatgcatctaaatgtcctttaag 38107306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 391 - 427
Target Start/End: Original strand, 38633608 - 38633644
Alignment:
Q  391 tattatataggtcaaatgcatctaaaggtcctttaag 427  Q
    ||||||||||||||||||| |||||||||| ||||||    
T  38633608 tattatataggtcaaatgcgtctaaaggtcttttaag 38633644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 399 - 427
Target Start/End: Original strand, 41536433 - 41536461
Alignment:
Q  399 aggtcaaatgcatctaaaggtcctttaag 427  Q
    |||||||||||||||||||||||||||||    
T  41536433 aggtcaaatgcatctaaaggtcctttaag 41536461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 391 - 427
Target Start/End: Complemental strand, 12613153 - 12613117
Alignment:
Q  391 tattatataggtcaaatgcatctaaaggtcctttaag 427  Q
    ||||||||||||||||||||||||||||| |||||||    
T  12613153 tattatataggtcaaatgcatctaaaggttctttaag 12613117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 398 - 427
Target Start/End: Original strand, 2598005 - 2598034
Alignment:
Q  398 taggtcaaatgcatctaaaggtcctttaag 427  Q
    ||||||||||||||||||||||||||||||    
T  2598005 taggtcaaatgcatctaaaggtcctttaag 2598034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 394 - 427
Target Start/End: Complemental strand, 17943276 - 17943243
Alignment:
Q  394 tatataggtcaaatgcatctaaaggtcctttaag 427  Q
    ||||| ||||||||||||||||||||||||||||    
T  17943276 tatattggtcaaatgcatctaaaggtcctttaag 17943243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 395 - 427
Target Start/End: Original strand, 2643927 - 2643959
Alignment:
Q  395 atataggtcaaatgcatctaaaggtcctttaag 427  Q
    |||| ||||||||||||||||||||||||||||    
T  2643927 atatgggtcaaatgcatctaaaggtcctttaag 2643959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 399 - 427
Target Start/End: Complemental strand, 12626871 - 12626843
Alignment:
Q  399 aggtcaaatgcatctaaaggtcctttaag 427  Q
    |||||||||||||||||||||||||||||    
T  12626871 aggtcaaatgcatctaaaggtcctttaag 12626843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 80 - 116
Target Start/End: Original strand, 16352183 - 16352219
Alignment:
Q  80 aaaattgttagaaaatagttgtataaatatcatttct 116  Q
    |||||||||| ||||| ||||||||||||||||||||    
T  16352183 aaaattgttataaaatggttgtataaatatcatttct 16352219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 399 - 427
Target Start/End: Complemental strand, 26393333 - 26393305
Alignment:
Q  399 aggtcaaatgcatctaaaggtcctttaag 427  Q
    |||||||||||||||||||||||||||||    
T  26393333 aggtcaaatgcatctaaaggtcctttaag 26393305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 26)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 395 - 427
Target Start/End: Original strand, 14717417 - 14717449
Alignment:
Q  395 atataggtcaaatgcatctaaaggtcctttaag 427  Q
    |||||||||||||||||||||||||||||||||    
T  14717417 atataggtcaaatgcatctaaaggtcctttaag 14717449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 395 - 426
Target Start/End: Original strand, 16751958 - 16751989
Alignment:
Q  395 atataggtcaaatgcatctaaaggtcctttaa 426  Q
    ||||||||||||||||||||||||||||||||    
T  16751958 atataggtcaaatgcatctaaaggtcctttaa 16751989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 397 - 427
Target Start/End: Original strand, 8215715 - 8215745
Alignment:
Q  397 ataggtcaaatgcatctaaaggtcctttaag 427  Q
    |||||||||||||||||||||||||||||||    
T  8215715 ataggtcaaatgcatctaaaggtcctttaag 8215745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 397 - 427
Target Start/End: Original strand, 11935292 - 11935322
Alignment:
Q  397 ataggtcaaatgcatctaaaggtcctttaag 427  Q
    |||||||||||||||||||||||||||||||    
T  11935292 ataggtcaaatgcatctaaaggtcctttaag 11935322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 397 - 427
Target Start/End: Complemental strand, 17002482 - 17002452
Alignment:
Q  397 ataggtcaaatgcatctaaaggtcctttaag 427  Q
    |||||||||||||||||||||||||||||||    
T  17002482 ataggtcaaatgcatctaaaggtcctttaag 17002452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 397 - 427
Target Start/End: Complemental strand, 35861531 - 35861501
Alignment:
Q  397 ataggtcaaatgcatctaaaggtcctttaag 427  Q
    |||||||||||||||||||||||||||||||    
T  35861531 ataggtcaaatgcatctaaaggtcctttaag 35861501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 397 - 426
Target Start/End: Complemental strand, 3352327 - 3352298
Alignment:
Q  397 ataggtcaaatgcatctaaaggtcctttaa 426  Q
    ||||||||||||||||||||||||||||||    
T  3352327 ataggtcaaatgcatctaaaggtcctttaa 3352298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 398 - 427
Target Start/End: Complemental strand, 4016198 - 4016169
Alignment:
Q  398 taggtcaaatgcatctaaaggtcctttaag 427  Q
    ||||||||||||||||||||||||||||||    
T  4016198 taggtcaaatgcatctaaaggtcctttaag 4016169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 394 - 427
Target Start/End: Original strand, 6331190 - 6331223
Alignment:
Q  394 tatataggtcaaatgcatctaaaggtcctttaag 427  Q
    ||||||||||||||||||||||| ||||||||||    
T  6331190 tatataggtcaaatgcatctaaatgtcctttaag 6331223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 398 - 427
Target Start/End: Complemental strand, 6600461 - 6600432
Alignment:
Q  398 taggtcaaatgcatctaaaggtcctttaag 427  Q
    ||||||||||||||||||||||||||||||    
T  6600461 taggtcaaatgcatctaaaggtcctttaag 6600432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 398 - 427
Target Start/End: Complemental strand, 20408769 - 20408740
Alignment:
Q  398 taggtcaaatgcatctaaaggtcctttaag 427  Q
    ||||||||||||||||||||||||||||||    
T  20408769 taggtcaaatgcatctaaaggtcctttaag 20408740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 398 - 427
Target Start/End: Original strand, 26035271 - 26035300
Alignment:
Q  398 taggtcaaatgcatctaaaggtcctttaag 427  Q
    ||||||||||||||||||||||||||||||    
T  26035271 taggtcaaatgcatctaaaggtcctttaag 26035300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 398 - 427
Target Start/End: Original strand, 38964019 - 38964048
Alignment:
Q  398 taggtcaaatgcatctaaaggtcctttaag 427  Q
    ||||||||||||||||||||||||||||||    
T  38964019 taggtcaaatgcatctaaaggtcctttaag 38964048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 80 - 116
Target Start/End: Complemental strand, 2456063 - 2456027
Alignment:
Q  80 aaaattgttagaaaatagttgtataaatatcatttct 116  Q
    |||||||||| |||||||||||||| |||||||||||    
T  2456063 aaaattgttataaaatagttgtatagatatcatttct 2456027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 80 - 116
Target Start/End: Complemental strand, 5996704 - 5996668
Alignment:
Q  80 aaaattgttagaaaatagttgtataaatatcatttct 116  Q
    |||||||||| |||||||||||| |||||||||||||    
T  5996704 aaaattgttaaaaaatagttgtacaaatatcatttct 5996668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 399 - 427
Target Start/End: Complemental strand, 6252207 - 6252179
Alignment:
Q  399 aggtcaaatgcatctaaaggtcctttaag 427  Q
    |||||||||||||||||||||||||||||    
T  6252207 aggtcaaatgcatctaaaggtcctttaag 6252179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 80 - 116
Target Start/End: Complemental strand, 6529056 - 6529020
Alignment:
Q  80 aaaattgttagaaaatagttgtataaatatcatttct 116  Q
    ||||||||||||||||| ||||| |||||||||||||    
T  6529056 aaaattgttagaaaataattgtacaaatatcatttct 6529020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 399 - 427
Target Start/End: Complemental strand, 11001052 - 11001024
Alignment:
Q  399 aggtcaaatgcatctaaaggtcctttaag 427  Q
    |||||||||||||||||||||||||||||    
T  11001052 aggtcaaatgcatctaaaggtcctttaag 11001024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 80 - 116
Target Start/End: Original strand, 13547268 - 13547304
Alignment:
Q  80 aaaattgttagaaaatagttgtataaatatcatttct 116  Q
    |||||||||| ||||||||||||| ||||||||||||    
T  13547268 aaaattgttacaaaatagttgtatgaatatcatttct 13547304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 391 - 427
Target Start/End: Original strand, 16095858 - 16095894
Alignment:
Q  391 tattatataggtcaaatgcatctaaaggtcctttaag 427  Q
    |||||| ||||||||||||||||||| ||||||||||    
T  16095858 tattatgtaggtcaaatgcatctaaaagtcctttaag 16095894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 399 - 427
Target Start/End: Original strand, 19659407 - 19659435
Alignment:
Q  399 aggtcaaatgcatctaaaggtcctttaag 427  Q
    |||||||||||||||||||||||||||||    
T  19659407 aggtcaaatgcatctaaaggtcctttaag 19659435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 399 - 427
Target Start/End: Complemental strand, 26593604 - 26593576
Alignment:
Q  399 aggtcaaatgcatctaaaggtcctttaag 427  Q
    |||||||||||||||||||||||||||||    
T  26593604 aggtcaaatgcatctaaaggtcctttaag 26593576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 391 - 427
Target Start/End: Original strand, 27115997 - 27116033
Alignment:
Q  391 tattatataggtcaaatgcatctaaaggtcctttaag 427  Q
    |||||||||||||||||| |||||||||| |||||||    
T  27115997 tattatataggtcaaatgtatctaaaggttctttaag 27116033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 399 - 427
Target Start/End: Complemental strand, 33003276 - 33003248
Alignment:
Q  399 aggtcaaatgcatctaaaggtcctttaag 427  Q
    |||||||||||||||||||||||||||||    
T  33003276 aggtcaaatgcatctaaaggtcctttaag 33003248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 395 - 427
Target Start/End: Complemental strand, 33760798 - 33760766
Alignment:
Q  395 atataggtcaaatgcatctaaaggtcctttaag 427  Q
    |||||||||||||||||||||| ||||||||||    
T  33760798 atataggtcaaatgcatctaaaagtcctttaag 33760766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 80 - 116
Target Start/End: Original strand, 36416096 - 36416132
Alignment:
Q  80 aaaattgttagaaaatagttgtataaatatcatttct 116  Q
    |||||||||||||||| |||||| |||||||||||||    
T  36416096 aaaattgttagaaaatggttgtacaaatatcatttct 36416132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 391 - 427
Target Start/End: Original strand, 2055094 - 2055130
Alignment:
Q  391 tattatataggtcaaatgcatctaaaggtcctttaag 427  Q
    |||||| ||||||||||||||||||||||||||||||    
T  2055094 tattatttaggtcaaatgcatctaaaggtcctttaag 2055130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 69 - 116
Target Start/End: Complemental strand, 40755968 - 40755922
Alignment:
Q  69 aaattatcaacaaaattgttagaaaatagttgtataaatatcatttct 116  Q
    |||||||||| |||||||||||||||| |||||| |||||||||||||    
T  40755968 aaattatcaa-aaaattgttagaaaatggttgtacaaatatcatttct 40755922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 397 - 427
Target Start/End: Complemental strand, 5227627 - 5227597
Alignment:
Q  397 ataggtcaaatgcatctaaaggtcctttaag 427  Q
    |||||||||||||||||||||||||||||||    
T  5227627 ataggtcaaatgcatctaaaggtcctttaag 5227597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 397 - 427
Target Start/End: Complemental strand, 28264880 - 28264850
Alignment:
Q  397 ataggtcaaatgcatctaaaggtcctttaag 427  Q
    |||||||||||||||||||||||||||||||    
T  28264880 ataggtcaaatgcatctaaaggtcctttaag 28264850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 397 - 427
Target Start/End: Complemental strand, 30141403 - 30141373
Alignment:
Q  397 ataggtcaaatgcatctaaaggtcctttaag 427  Q
    |||||||||||||||||||||||||||||||    
T  30141403 ataggtcaaatgcatctaaaggtcctttaag 30141373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 398 - 427
Target Start/End: Complemental strand, 17847449 - 17847420
Alignment:
Q  398 taggtcaaatgcatctaaaggtcctttaag 427  Q
    ||||||||||||||||||||||||||||||    
T  17847449 taggtcaaatgcatctaaaggtcctttaag 17847420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 398 - 427
Target Start/End: Complemental strand, 19169091 - 19169062
Alignment:
Q  398 taggtcaaatgcatctaaaggtcctttaag 427  Q
    ||||||||||||||||||||||||||||||    
T  19169091 taggtcaaatgcatctaaaggtcctttaag 19169062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 398 - 427
Target Start/End: Complemental strand, 19496471 - 19496442
Alignment:
Q  398 taggtcaaatgcatctaaaggtcctttaag 427  Q
    ||||||||||||||||||||||||||||||    
T  19496471 taggtcaaatgcatctaaaggtcctttaag 19496442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 394 - 427
Target Start/End: Complemental strand, 20534435 - 20534402
Alignment:
Q  394 tatataggtcaaatgcatctaaaggtcctttaag 427  Q
    ||||||||||||||||||||||||||| ||||||    
T  20534435 tatataggtcaaatgcatctaaaggtcatttaag 20534402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 398 - 427
Target Start/End: Original strand, 22298335 - 22298364
Alignment:
Q  398 taggtcaaatgcatctaaaggtcctttaag 427  Q
    ||||||||||||||||||||||||||||||    
T  22298335 taggtcaaatgcatctaaaggtcctttaag 22298364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 81 - 114
Target Start/End: Original strand, 23758353 - 23758386
Alignment:
Q  81 aaattgttagaaaatagttgtataaatatcattt 114  Q
    ||||||||| ||||||||||||||||||||||||    
T  23758353 aaattgttaaaaaatagttgtataaatatcattt 23758386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 398 - 427
Target Start/End: Original strand, 26017268 - 26017297
Alignment:
Q  398 taggtcaaatgcatctaaaggtcctttaag 427  Q
    ||||||||||||||||||||||||||||||    
T  26017268 taggtcaaatgcatctaaaggtcctttaag 26017297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 398 - 427
Target Start/End: Complemental strand, 28160280 - 28160251
Alignment:
Q  398 taggtcaaatgcatctaaaggtcctttaag 427  Q
    ||||||||||||||||||||||||||||||    
T  28160280 taggtcaaatgcatctaaaggtcctttaag 28160251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 398 - 427
Target Start/End: Original strand, 42273647 - 42273676
Alignment:
Q  398 taggtcaaatgcatctaaaggtcctttaag 427  Q
    ||||||||||||||||||||||||||||||    
T  42273647 taggtcaaatgcatctaaaggtcctttaag 42273676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 398 - 427
Target Start/End: Complemental strand, 50276460 - 50276431
Alignment:
Q  398 taggtcaaatgcatctaaaggtcctttaag 427  Q
    ||||||||||||||||||||||||||||||    
T  50276460 taggtcaaatgcatctaaaggtcctttaag 50276431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 398 - 426
Target Start/End: Complemental strand, 8882339 - 8882311
Alignment:
Q  398 taggtcaaatgcatctaaaggtcctttaa 426  Q
    |||||||||||||||||||||||||||||    
T  8882339 taggtcaaatgcatctaaaggtcctttaa 8882311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 80 - 116
Target Start/End: Original strand, 9472547 - 9472583
Alignment:
Q  80 aaaattgttagaaaatagttgtataaatatcatttct 116  Q
    |||||| |||||||||||||||| |||||||||||||    
T  9472547 aaaattattagaaaatagttgtacaaatatcatttct 9472583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 84 - 116
Target Start/End: Complemental strand, 12241091 - 12241059
Alignment:
Q  84 ttgttagaaaatagttgtataaatatcatttct 116  Q
    ||||||||||||||||||| |||||||||||||    
T  12241091 ttgttagaaaatagttgtacaaatatcatttct 12241059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 399 - 427
Target Start/End: Original strand, 17847003 - 17847031
Alignment:
Q  399 aggtcaaatgcatctaaaggtcctttaag 427  Q
    |||||||||||||||||||||||||||||    
T  17847003 aggtcaaatgcatctaaaggtcctttaag 17847031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 399 - 427
Target Start/End: Original strand, 28264489 - 28264517
Alignment:
Q  399 aggtcaaatgcatctaaaggtcctttaag 427  Q
    |||||||||||||||||||||||||||||    
T  28264489 aggtcaaatgcatctaaaggtcctttaag 28264517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 399 - 427
Target Start/End: Original strand, 33173926 - 33173954
Alignment:
Q  399 aggtcaaatgcatctaaaggtcctttaag 427  Q
    |||||||||||||||||||||||||||||    
T  33173926 aggtcaaatgcatctaaaggtcctttaag 33173954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 84 - 116
Target Start/End: Original strand, 33820374 - 33820406
Alignment:
Q  84 ttgttagaaaatagttgtataaatatcatttct 116  Q
    ||||||||||||||||||| |||||||||||||    
T  33820374 ttgttagaaaatagttgtacaaatatcatttct 33820406  T

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Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 399 - 427
Target Start/End: Original strand, 36444588 - 36444616
Alignment:
Q  399 aggtcaaatgcatctaaaggtcctttaag 427  Q
    |||||||||||||||||||||||||||||    
T  36444588 aggtcaaatgcatctaaaggtcctttaag 36444616  T

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Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 80 - 116
Target Start/End: Original strand, 43608077 - 43608113
Alignment:
Q  80 aaaattgttagaaaatagttgtataaatatcatttct 116  Q
    |||||||| |||||||| |||||||||||||||||||    
T  43608077 aaaattgtgagaaaatacttgtataaatatcatttct 43608113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 391 - 427
Target Start/End: Complemental strand, 48552049 - 48552013
Alignment:
Q  391 tattatataggtcaaatgcatctaaaggtcctttaag 427  Q
    |||| |||||||||||||||||||||||| |||||||    
T  48552049 tattttataggtcaaatgcatctaaaggttctttaag 48552013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 399 - 427
Target Start/End: Complemental strand, 51371400 - 51371372
Alignment:
Q  399 aggtcaaatgcatctaaaggtcctttaag 427  Q
    |||||||||||||||||||||||||||||    
T  51371400 aggtcaaatgcatctaaaggtcctttaag 51371372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 80 - 116
Target Start/End: Original strand, 53357111 - 53357147
Alignment:
Q  80 aaaattgttagaaaatagttgtataaatatcatttct 116  Q
    |||||||||||||||||||| || |||||||||||||    
T  53357111 aaaattgttagaaaatagttatacaaatatcatttct 53357147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 80 - 116
Target Start/End: Original strand, 53662462 - 53662498
Alignment:
Q  80 aaaattgttagaaaatagttgtataaatatcatttct 116  Q
    |||||||||| |||||||||||| |||||||||||||    
T  53662462 aaaattgttacaaaatagttgtacaaatatcatttct 53662498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 399 - 427
Target Start/End: Complemental strand, 56555468 - 56555440
Alignment:
Q  399 aggtcaaatgcatctaaaggtcctttaag 427  Q
    |||||||||||||||||||||||||||||    
T  56555468 aggtcaaatgcatctaaaggtcctttaag 56555440  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 391 - 427
Target Start/End: Original strand, 23671710 - 23671746
Alignment:
Q  391 tattatataggtcaaatgcatctaaaggtcctttaag 427  Q
    |||| ||||||||||||||||||||||||||||||||    
T  23671710 tattttataggtcaaatgcatctaaaggtcctttaag 23671746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 395 - 427
Target Start/End: Complemental strand, 37838536 - 37838504
Alignment:
Q  395 atataggtcaaatgcatctaaaggtcctttaag 427  Q
    |||||||||||||||||||||||||||||||||    
T  37838536 atataggtcaaatgcatctaaaggtcctttaag 37838504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 396 - 427
Target Start/End: Complemental strand, 2057163 - 2057132
Alignment:
Q  396 tataggtcaaatgcatctaaaggtcctttaag 427  Q
    ||||||||||||||||||||||||||||||||    
T  2057163 tataggtcaaatgcatctaaaggtcctttaag 2057132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 396 - 427
Target Start/End: Complemental strand, 27328822 - 27328791
Alignment:
Q  396 tataggtcaaatgcatctaaaggtcctttaag 427  Q
    ||||||||||||||||||||||||||||||||    
T  27328822 tataggtcaaatgcatctaaaggtcctttaag 27328791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 396 - 427
Target Start/End: Complemental strand, 37654332 - 37654301
Alignment:
Q  396 tataggtcaaatgcatctaaaggtcctttaag 427  Q
    ||||||||||||||||||||||||||||||||    
T  37654332 tataggtcaaatgcatctaaaggtcctttaag 37654301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 391 - 424
Target Start/End: Original strand, 22066567 - 22066600
Alignment:
Q  391 tattatataggtcaaatgcatctaaaggtccttt 424  Q
    ||||| ||||||||||||||||||||||||||||    
T  22066567 tattacataggtcaaatgcatctaaaggtccttt 22066600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 398 - 427
Target Start/End: Original strand, 28650331 - 28650360
Alignment:
Q  398 taggtcaaatgcatctaaaggtcctttaag 427  Q
    ||||||||||||||||||||||||||||||    
T  28650331 taggtcaaatgcatctaaaggtcctttaag 28650360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 398 - 427
Target Start/End: Original strand, 38750863 - 38750892
Alignment:
Q  398 taggtcaaatgcatctaaaggtcctttaag 427  Q
    ||||||||||||||||||||||||||||||    
T  38750863 taggtcaaatgcatctaaaggtcctttaag 38750892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 399 - 427
Target Start/End: Original strand, 920839 - 920867
Alignment:
Q  399 aggtcaaatgcatctaaaggtcctttaag 427  Q
    |||||||||||||||||||||||||||||    
T  920839 aggtcaaatgcatctaaaggtcctttaag 920867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 80 - 116
Target Start/End: Original strand, 1876321 - 1876357
Alignment:
Q  80 aaaattgttagaaaatagttgtataaatatcatttct 116  Q
    |||||||| | ||||||||||||||||||||||||||    
T  1876321 aaaattgtgaaaaaatagttgtataaatatcatttct 1876357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 399 - 427
Target Start/End: Original strand, 2094317 - 2094345
Alignment:
Q  399 aggtcaaatgcatctaaaggtcctttaag 427  Q
    |||||||||||||||||||||||||||||    
T  2094317 aggtcaaatgcatctaaaggtcctttaag 2094345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 399 - 427
Target Start/End: Original strand, 7297171 - 7297199
Alignment:
Q  399 aggtcaaatgcatctaaaggtcctttaag 427  Q
    |||||||||||||||||||||||||||||    
T  7297171 aggtcaaatgcatctaaaggtcctttaag 7297199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 84 - 116
Target Start/End: Complemental strand, 16754429 - 16754397
Alignment:
Q  84 ttgttagaaaatagttgtataaatatcatttct 116  Q
    |||||||||||| ||||||||||||||||||||    
T  16754429 ttgttagaaaattgttgtataaatatcatttct 16754397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 80 - 116
Target Start/End: Complemental strand, 17159603 - 17159567
Alignment:
Q  80 aaaattgttagaaaatagttgtataaatatcatttct 116  Q
    |||||||||| |||||||||||| |||||||||||||    
T  17159603 aaaattgttaaaaaatagttgtacaaatatcatttct 17159567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 395 - 427
Target Start/End: Original strand, 27328399 - 27328431
Alignment:
Q  395 atataggtcaaatgcatctaaaggtcctttaag 427  Q
    |||||||||||||||||||||| ||||||||||    
T  27328399 atataggtcaaatgcatctaaatgtcctttaag 27328431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 84 - 116
Target Start/End: Original strand, 28277805 - 28277837
Alignment:
Q  84 ttgttagaaaatagttgtataaatatcatttct 116  Q
    |||| ||||||||||||||||||||||||||||    
T  28277805 ttgtcagaaaatagttgtataaatatcatttct 28277837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 80 - 116
Target Start/End: Complemental strand, 34372884 - 34372848
Alignment:
Q  80 aaaattgttagaaaatagttgtataaatatcatttct 116  Q
    ||||||||||||||||| ||||| |||||||||||||    
T  34372884 aaaattgttagaaaataattgtagaaatatcatttct 34372848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 399 - 427
Target Start/End: Complemental strand, 36211282 - 36211254
Alignment:
Q  399 aggtcaaatgcatctaaaggtcctttaag 427  Q
    |||||||||||||||||||||||||||||    
T  36211282 aggtcaaatgcatctaaaggtcctttaag 36211254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 399 - 427
Target Start/End: Original strand, 37732099 - 37732127
Alignment:
Q  399 aggtcaaatgcatctaaaggtcctttaag 427  Q
    |||||||||||||||||||||||||||||    
T  37732099 aggtcaaatgcatctaaaggtcctttaag 37732127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0117 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0117
Description:

Target: scaffold0117; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 396 - 427
Target Start/End: Original strand, 14492 - 14523
Alignment:
Q  396 tataggtcaaatgcatctaaaggtcctttaag 427  Q
    ||||||||||||||||||||||||||||||||    
T  14492 tataggtcaaatgcatctaaaggtcctttaag 14523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1562 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold1562
Description:

Target: scaffold1562; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 394 - 424
Target Start/End: Complemental strand, 810 - 780
Alignment:
Q  394 tatataggtcaaatgcatctaaaggtccttt 424  Q
    |||||||||||||||||||||||||||||||    
T  810 tatataggtcaaatgcatctaaaggtccttt 780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1158 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold1158
Description:

Target: scaffold1158; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 394 - 424
Target Start/End: Original strand, 1783 - 1813
Alignment:
Q  394 tatataggtcaaatgcatctaaaggtccttt 424  Q
    |||||||||||||||||||||||||||||||    
T  1783 tatataggtcaaatgcatctaaaggtccttt 1813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1986 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold1986
Description:

Target: scaffold1986; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 399 - 427
Target Start/End: Complemental strand, 321 - 293
Alignment:
Q  399 aggtcaaatgcatctaaaggtcctttaag 427  Q
    |||||||||||||||||||||||||||||    
T  321 aggtcaaatgcatctaaaggtcctttaag 293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0717 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0717
Description:

Target: scaffold0717; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 394 - 426
Target Start/End: Complemental strand, 2086 - 2054
Alignment:
Q  394 tatataggtcaaatgcatctaaaggtcctttaa 426  Q
    ||||||||||||||||||| |||||||||||||    
T  2086 tatataggtcaaatgcatcaaaaggtcctttaa 2054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 395 - 427
Target Start/End: Complemental strand, 219125 - 219093
Alignment:
Q  395 atataggtcaaatgcatctaaaggtcctttaag 427  Q
    |||||| ||||||||||||||||||||||||||    
T  219125 atatagatcaaatgcatctaaaggtcctttaag 219093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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