View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21163_low_28 (Length: 446)

Name: NF21163_low_28
Description: NF21163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21163_low_28
NF21163_low_28
[»] chr8 (5 HSPs)
chr8 (54-445)||(43041073-43041481)
chr8 (54-276)||(43039368-43039589)
chr8 (263-402)||(14196606-14196745)
chr8 (54-276)||(14196759-14196978)
chr8 (303-339)||(43039323-43039359)
[»] chr2 (8 HSPs)
chr2 (54-339)||(28027941-28028225)
chr2 (54-276)||(33413660-33413881)
chr2 (310-383)||(13107410-13107483)
chr2 (259-339)||(33413891-33413969)
chr2 (54-174)||(13109068-13109186)
chr2 (55-115)||(13107169-13107228)
chr2 (218-294)||(4659623-4659695)
chr2 (221-275)||(5188291-5188345)
[»] chr7 (7 HSPs)
chr7 (10-272)||(37747634-37747895)
chr7 (263-446)||(37747913-37748096)
chr7 (54-276)||(37749243-37749455)
chr7 (263-339)||(37749469-37749545)
chr7 (230-276)||(45809776-45809822)
chr7 (224-276)||(33829600-33829652)
chr7 (269-300)||(45809838-45809869)
[»] chr1 (7 HSPs)
chr1 (267-402)||(31477879-31478014)
chr1 (54-276)||(3585453-3585672)
chr1 (53-339)||(38206825-38207134)
chr1 (263-341)||(3584471-3584549)
chr1 (230-274)||(7493628-7493672)
chr1 (218-276)||(929893-929951)
chr1 (263-300)||(7493583-7493620)
[»] chr4 (2 HSPs)
chr4 (97-339)||(53611216-53611450)
chr4 (218-270)||(29298574-29298626)
[»] chr6 (5 HSPs)
chr6 (259-339)||(31798779-31798858)
chr6 (86-177)||(34391113-34391204)
chr6 (58-96)||(34486289-34486327)
chr6 (231-276)||(31798868-31798913)
chr6 (92-177)||(34486361-34486445)
[»] scaffold0330 (1 HSPs)
scaffold0330 (54-96)||(16982-17024)
[»] scaffold0240 (1 HSPs)
scaffold0240 (54-96)||(1000-1042)
[»] chr3 (3 HSPs)
chr3 (54-100)||(54017245-54017291)
chr3 (304-340)||(496764-496800)
chr3 (56-100)||(54017198-54017242)
[»] chr5 (1 HSPs)
chr5 (267-300)||(6600746-6600779)


Alignment Details
Target: chr8 (Bit Score: 253; Significance: 1e-140; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 54 - 445
Target Start/End: Complemental strand, 43041481 - 43041073
Alignment:
Q  54 tgatagaacatgcacatacataatcgagagaaagattagaatgatctctacacactcacacttggagaggaaattacaaaagaatgataaaaactcttat 153  Q
    |||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||  |||||||| |||||||||||||||||| ||||| |    
T  43041481 tgatagaacatgcacatacataattgagagaaatattagaatgatctctacacactcacacttatagaggaaactacaaaagaatgataaaa-ctcttct 43041383  T
Q  154 attattgaatatgagatatatgagatgtgtgctatacaatctacatcaactgaatacaacagcgaagtatttataagctaagttgagtaacttgcactac 253  Q
    |||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| ||| ||||| ||||| ||||||||||||||||||||||||    
T  43041382 attattgaatatgagagatatgagatgtgtgctatacaatctatatcaactgaatacaaaagctaagtacttataggctaagttgagtaacttgcactac 43041283  T
Q  254 aagccactaactaactaac-------------------taaccaacaaacatagttggatttatcctctactaactaacattagaatatgaattatattt 334  Q
    ||||||||||| |||||||                   |||||||||| ||||||||||| |||||   |||||||||||||||||||||||||||| ||    
T  43041282 aagccactaacaaactaactaactagttagttactaactaaccaacaagcatagttggatctatccataactaactaacattagaatatgaattatactt 43041183  T
Q  335 caacacacccccttaattcagattctactaacatcttaaattggaacaaaactaaaatcacgaggctttttcttctcaagccttgctacatcattcatac 434  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  43041182 caacacacccccttaattcagattctactaacatcttaaattggaac-aaactaaaatcacgaggctttttcttcttaagccttgctacatcattcatac 43041084  T
Q  435 tgctactagct 445  Q
    |||||||||||    
T  43041083 tgctactagct 43041073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 54 - 276
Target Start/End: Complemental strand, 43039589 - 43039368
Alignment:
Q  54 tgatagaacatgcacatacataatcgagagaaagattagaatgatctctacacactcacacttggagaggaaattacaaaagaatgataaaaactcttat 153  Q
    |||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| || ||||||||| |||||||||||||||||| ||||| |    
T  43039589 tgatagaacatgcacatacataattgagagaaatattagaatgatctctacacactcacatttagagaggaaactacaaaagaatgataaaa-ctcttct 43039491  T
Q  154 attattgaatatgagatatatgagatgtgtgctatacaatctacatcaactgaatacaacagcgaagtatttataagctaagttgagtaacttgcactac 253  Q
    || ||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| ||  ||||| ||||| |||||||||||||||||||| |||    
T  43039490 atcattgaatatgagagatatgagatgtgtgctatacaatctatatcaactgaatacaaaagataagtacttataggctaagttgagtaacttgcaatac 43039391  T
Q  254 aagccactaactaactaactaac 276  Q
    ||||||||||| |||||||||||    
T  43039390 aagccactaacaaactaactaac 43039368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 263 - 402
Target Start/End: Complemental strand, 14196745 - 14196606
Alignment:
Q  263 actaactaactaaccaacaaacatagttggatttatcctctactaactaacattagaatatgaattatatttcaacacacccccttaattcagattctac 362  Q
    |||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  14196745 actaaccaactaaccaacaaacatagttggatttatcctatactaactaacattagaatatgaattatacttcaacacacccccttaattcagattctac 14196646  T
Q  363 taacatcttaaattggaacaaaactaaaatcacgaggctt 402  Q
     ||||||||||||||||||||||||||||||||| |||||    
T  14196645 aaacatcttaaattggaacaaaactaaaatcacggggctt 14196606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 54 - 276
Target Start/End: Complemental strand, 14196978 - 14196759
Alignment:
Q  54 tgatagaacatgcacatacataatcgagagaaagattagaatgatctctacacactcacacttggagaggaaattacaaaagaatgataaaaactcttat 153  Q
    |||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||  |||||||| ||||||  |||||| ||||||||| |    
T  14196978 tgatagaacatgcacatacataattgagagaaaaattagaatgatctctacacactcacacttaaagaggaaactacaaagaaatgat-aaaactcttct 14196880  T
Q  154 attattgaatatgagatatatgagatgtgtgctatacaatct-acatcaactgaatacaacagcgaagtatttataagctaagttgagtaacttgcacta 252  Q
    |||||||||||||||| |||||||||||| ||||||||||||   ||| || ||||||||     | ||| ||||| | |||||||| ||||||||||||    
T  14196879 attattgaatatgagagatatgagatgtgagctatacaatctgtaatctacagaatacaa---acatgtacttataggataagttgaataacttgcacta 14196783  T
Q  253 caagccactaactaactaactaac 276  Q
    |||||| ||||| |||||||||||    
T  14196782 caagcctctaacaaactaactaac 14196759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 303 - 339
Target Start/End: Complemental strand, 43039359 - 43039323
Alignment:
Q  303 tactaactaacattagaatatgaattatatttcaaca 339  Q
    ||||||||||||||||||||||||||||| |||||||    
T  43039359 tactaactaacattagaatatgaattatacttcaaca 43039323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 210; Significance: 1e-115; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 54 - 339
Target Start/End: Complemental strand, 28028225 - 28027941
Alignment:
Q  54 tgatagaacatgcacatacataatcgagagaaagattagaatgatctctacacactcacacttggagaggaaattacaaaagaatgataaaaactcttat 153  Q
    |||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||  |||||||| |||||||||||||||||| ||||| |    
T  28028225 tgatagaacatgcacatacataattgagagaaatattagaatgatctctacacactcacacttaaagaggaaactacaaaagaatgataaaa-ctcttct 28028127  T
Q  154 attattgaatatgagatatatgagatgtgtgctatacaatctacatcaactgaatacaacagcgaagtatttataagctaagttgagtaacttgcactac 253  Q
    |||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| ||| ||||| ||||| ||||||||||||||||||||||||    
T  28028126 attattgaatatgagagatatgagatgtgtgctatacaatctatatcaactgaatacaaaagctaagtacttataggctaagttgagtaacttgcactac 28028027  T
Q  254 aagccactaactaactaactaaccaacaaacatagttggatttatcctctactaactaacattagaatatgaattatatttcaaca 339  Q
    ||||||||||| ||||||||||||||||| ||||||||||||||||| | |||||||||||||||||||||||||||| |||||||    
T  28028026 aagccactaacaaactaactaaccaacaagcatagttggatttatccacaactaactaacattagaatatgaattatacttcaaca 28027941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 54 - 276
Target Start/End: Original strand, 33413660 - 33413881
Alignment:
Q  54 tgatagaacatgcacatacataatcgagagaaagattagaatgatctctacacactcacacttggagaggaaattacaaaagaatgataaaaactcttat 153  Q
    |||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||  ||||||||| |||||| |||||||||||  |||| |    
T  33413660 tgatagaacatgcacatacataattgagagaaagaatagaatgatctctacacactcacactatgagaggaaactacaaaggaatgataaaat-tcttct 33413758  T
Q  154 attattgaatatgagatatatgagatgtgtgctatacaatctacatcaactgaatacaacagcgaagtatttataagctaagttgagtaacttgcactac 253  Q
    |||||||||||||||| |||||||||||||||||||||||||  ||||||||||||||| ||| ||||| ||||| | |||||||| |||||||||||||    
T  33413759 attattgaatatgagagatatgagatgtgtgctatacaatctgtatcaactgaatacaaaagctaagtacttataggttaagttgaataacttgcactac 33413858  T
Q  254 aagccactaactaactaactaac 276  Q
    |||||||||||||||| ||||||    
T  33413859 aagccactaactaactgactaac 33413881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 310 - 383
Target Start/End: Original strand, 13107410 - 13107483
Alignment:
Q  310 taacattagaatatgaattatatttcaacacacccccttaattcagattctactaacatcttaaattggaacaa 383  Q
    |||||||| ||||||||||||| ||||||||||||||||||||  |||||| ||||||||||||||||||||||    
T  13107410 taacattaaaatatgaattatacttcaacacacccccttaatttggattcttctaacatcttaaattggaacaa 13107483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 259 - 339
Target Start/End: Original strand, 33413891 - 33413969
Alignment:
Q  259 actaactaactaactaaccaacaaacatagttggatttatcctctactaactaacattagaatatgaattatatttcaaca 339  Q
    ||||||||||||| ||||||||||||||||||||||||||||   ||||||||  |||||||||||||||||| |||||||    
T  33413891 actaactaactaattaaccaacaaacatagttggatttatccataactaacta--attagaatatgaattatacttcaaca 33413969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 54 - 174
Target Start/End: Original strand, 13109068 - 13109186
Alignment:
Q  54 tgatagaacatgcacatacataatcgagagaaagattagaatgatctctacacactcacac-ttggagaggaaattacaaaagaatgataaaaactctta 152  Q
    |||||||||||||||||| | ||| ||||||||| | ||||||||||| ||| |||||||| || ||||| ||| |||||| ||||||| ||| |||||     
T  13109068 tgatagaacatgcacatatagaattgagagaaagttaagaatgatctc-acatactcacactttagagagaaaactacaaatgaatgat-aaatctctt- 13109164  T
Q  153 tattattgaatatgagatatat 174  Q
    ||||||||||||||||| ||||    
T  13109165 tattattgaatatgagagatat 13109186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 55 - 115
Target Start/End: Original strand, 13107169 - 13107228
Alignment:
Q  55 gatagaacatgcacatacataatcgagagaaagattagaatgatctctacacactcacact 115  Q
    |||| |||||||||||||| |||||||||||||||||||||||| || |||||||||||||    
T  13107169 gataaaacatgcacatacagaatcgagagaaagattagaatgatttc-acacactcacact 13107228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 218 - 294
Target Start/End: Complemental strand, 4659695 - 4659623
Alignment:
Q  218 aagtatttataagctaagttgagtaacttgcactacaagccactaactaactaactaaccaacaaacatagttggat 294  Q
    ||||||||||| ||||||| |||| |||||||||||| | |||||||||||    ||||||||||||||||||||||    
T  4659695 aagtatttataggctaagtagagttacttgcactacaggtcactaactaac----taaccaacaaacatagttggat 4659623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 221 - 275
Target Start/End: Complemental strand, 5188345 - 5188291
Alignment:
Q  221 tatttataagctaagttgagtaacttgcactacaagccactaactaactaactaa 275  Q
    |||||||| |||||||   ||||||||||||||||| ||| ||||||||||||||    
T  5188345 tatttataggctaagtgttgtaacttgcactacaagtcacaaactaactaactaa 5188291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 191; Significance: 1e-103; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 10 - 272
Target Start/End: Original strand, 37747634 - 37747895
Alignment:
Q  10 tcacagacacggatataaacatagacgtcaccataccacataggtgatagaacatgcacatacataatcgagagaaagattagaatgatctctacacact 109  Q
    ||||||||||| ||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37747634 tcacagacacgaatataaacatagacgtcgccataccacagaggtgatagaacatgcacatacataatcgagagaaagattagaatgatctctacacact 37747733  T
Q  110 cacacttggagaggaaattacaaaagaatgataaaaactcttatattattgaatatgagatatatgagatgtgtgctatacaatctacatcaactgaata 209  Q
    ||||||| ||||||||| |||| | ||||||| ||||||||| |||||||||||||||||  |||||||||| |||||||||||||| ||||||||||||    
T  37747734 cacacttagagaggaaactacagaggaatgat-aaaactcttctattattgaatatgagaggtatgagatgtttgctatacaatctatatcaactgaata 37747832  T
Q  210 caacagcgaagtatttataagctaagttgagtaacttgcactacaagccactaactaactaac 272  Q
    ||| ||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||    
T  37747833 caaaagccaagtatttataggctaagttgagtaacttgcactacaagccactaacaaactaac 37747895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 263 - 446
Target Start/End: Original strand, 37747913 - 37748096
Alignment:
Q  263 actaactaactaaccaacaaacatagttggatttatcctctactaactaacattagaatatgaattatatttcaacacacccccttaattcagattctac 362  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||    
T  37747913 actaactaactaaccaataaacatagttggatttatcctctactaactaacatcagaatatgaattatacttcaacacacccccttaattcagattctac 37748012  T
Q  363 taacatcttaaattggaacaaaactaaaatcacgaggctttttcttctcaagccttgctacatcattcatactgctactagctt 446  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37748013 taacatcttaaattggaacaaaactaaaatcacgaggctttttcttctcaagccttgctacatcattcatactgctactagctt 37748096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 54 - 276
Target Start/End: Original strand, 37749243 - 37749455
Alignment:
Q  54 tgatagaacatgcacatacataatcgagagaaagattagaatgatctctacacactcacacttggagaggaaattacaaaagaatgataaaaactcttat 153  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||| |||||| ||||||| ||||||||| |    
T  37749243 tgatagaacatgcacatacataattgagagaaagattagaatgatctctacacactcacacttagagagaaaactacaaaggaatgat-aaaactcttct 37749341  T
Q  154 attattgaatatgagatatatgagatgtgtgctatacaatctacatcaactgaatacaacagcgaagtatttataagctaagttgagtaacttgcactac 253  Q
    ||||||||         |||||||||||||||||||||||||| ||||||||||||||| ||  ||||| ||||| ||||||||||||||||||||||||    
T  37749342 attattga---------atatgagatgtgtgctatacaatctatatcaactgaatacaaaagttaagtacttataggctaagttgagtaacttgcactac 37749432  T
Q  254 aagccactaactaactaactaac 276  Q
    ||||||||||| |||||||||||    
T  37749433 aagccactaacaaactaactaac 37749455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 263 - 339
Target Start/End: Original strand, 37749469 - 37749545
Alignment:
Q  263 actaactaactaaccaacaaacatagttggatttatcctctactaactaacattagaatatgaattatatttcaaca 339  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  37749469 actaactaactaaccaacaaacatagttggatttatcctctactaactaacattagaatatgaattatacttcaaca 37749545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 230 - 276
Target Start/End: Original strand, 45809776 - 45809822
Alignment:
Q  230 gctaagttgagtaacttgcactacaagccactaactaactaactaac 276  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||    
T  45809776 gctaagttgagtaacttgcactacaagcctctaactaactaactaac 45809822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 224 - 276
Target Start/End: Complemental strand, 33829652 - 33829600
Alignment:
Q  224 ttataagctaagttgagtaacttgcactacaagccactaactaactaactaac 276  Q
    ||||| |||||||||||||||||||||||||||| |||||| |||||||||||    
T  33829652 ttataggctaagttgagtaacttgcactacaagctactaacaaactaactaac 33829600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 269 - 300
Target Start/End: Original strand, 45809838 - 45809869
Alignment:
Q  269 taactaaccaacaaacatagttggatttatcc 300  Q
    ||||||||||||||||||||||||||||||||    
T  45809838 taactaaccaacaaacatagttggatttatcc 45809869  T

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Target: chr1 (Bit Score: 116; Significance: 7e-59; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 267 - 402
Target Start/End: Complemental strand, 31478014 - 31477879
Alignment:
Q  267 actaactaaccaacaaacatagttggatttatcctctactaactaacattagaatatgaattatatttcaacacacccccttaattcagattctactaac 366  Q
    |||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||    
T  31478014 actaactaaccaacaaacatagttggatttatccacaactaactaacattagaatatgaattatacttcaacacacctccttaattcagattctactaac 31477915  T
Q  367 atcttaaattggaacaaaactaaaatcacgaggctt 402  Q
    ||||||| ||||||||||||||||||||||||||||    
T  31477914 atcttaacttggaacaaaactaaaatcacgaggctt 31477879  T

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Target: chr1; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 54 - 276
Target Start/End: Complemental strand, 3585672 - 3585453
Alignment:
Q  54 tgatagaacatgcacatacataatcgagagaaagattagaatgatctctacacactcacacttggagaggaaattacaaaagaatgataaaaactcttat 153  Q
    |||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| |||||| ||||||| ||||||||| |    
T  3585672 tgatagaacatgcatatacataattgagagaaagattagaatgatctctacacactcacacttagagaggaaactacaaaggaatgat-aaaactcttct 3585574  T
Q  154 attattgaatatgagatatatgagatgtgtgctatacaatct-acatcaactgaatacaacagcgaagtatttataagctaagttgagtaacttgcacta 252  Q
     ||||||||||| ||| |||||||||||||||||||||||||   ||| ||| |||||||     | |||  |||| |||||||||||||||||||||||    
T  3585573 gttattgaatataagagatatgagatgtgtgctatacaatctgtaatctacttaatacaa---acatgtacgtataggctaagttgagtaacttgcacta 3585477  T
Q  253 caagccactaactaactaactaac 276  Q
    |||||| ||||| |||||||||||    
T  3585476 caagcctctaacaaactaactaac 3585453  T

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Target: chr1; HSP #3
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 53 - 339
Target Start/End: Complemental strand, 38207134 - 38206825
Alignment:
Q  53 gtgatagaacatgcacatacataatcgagagaaagattagaatgatctctacacactcacacttggagaggaaattacaaaagaatgataaaaactctta 152  Q
    |||||||||||||||||| ||||||  |||||||||||||||||||||||||||| | ||| || ||||| ||| || ||| ||||||| |||||||||     
T  38207134 gtgatagaacatgcacatgcataattaagagaaagattagaatgatctctacacatttacatttagagagaaaactataaaggaatgat-aaaactcttc 38207036  T
Q  153 tattattgaatatgagatatatgagatgtgtgctatacaatct-acatcaactgaatacaacagcgaagtatttataagctaagttgagtaacttgcact 251  Q
    ||||||||||||||||| |||  ||||||||| ||||||||||   ||| |||||||||||    | | |  ||||||||||||||||||||||||||||    
T  38207035 tattattgaatatgagagatacaagatgtgtgttatacaatctgtaatctactgaatacaaacatgtacttattataagctaagttgagtaacttgcact 38206936  T
Q  252 acaagcc--------actaacta---------------actaactaaccaacaaacatagttggatttatcctctactaactaacattagaatatgaatt 328  Q
    |||||||        ||||||||               ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||    
T  38206935 acaagcctctaacaaactaactaactagttagttactaactaactaaccaacaaacatagttgaatttatcctctactaactaacattagaatattaatt 38206836  T
Q  329 atatttcaaca 339  Q
    ||| |||||||    
T  38206835 atacttcaaca 38206825  T

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Target: chr1; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 263 - 341
Target Start/End: Complemental strand, 3584549 - 3584471
Alignment:
Q  263 actaactaactaaccaacaaacatagttggatttatcctctactaactaacattagaatatgaattatatttcaacaca 341  Q
    ||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| |||||||||    
T  3584549 actaactaactaaccaacaaacatagttgaatttatcctctacaaactaacattagaatatgaattatacttcaacaca 3584471  T

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Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 230 - 274
Target Start/End: Complemental strand, 7493672 - 7493628
Alignment:
Q  230 gctaagttgagtaacttgcactacaagccactaactaactaacta 274  Q
    ||||||||||||||||||||||||||||| |||||||||||||||    
T  7493672 gctaagttgagtaacttgcactacaagcctctaactaactaacta 7493628  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 218 - 276
Target Start/End: Complemental strand, 929951 - 929893
Alignment:
Q  218 aagtatttataagctaagttgagtaacttgcactacaagccactaactaactaactaac 276  Q
    ||||| ||||| ||||||| ||||  ||||||||||||||||| ||| |||||||||||    
T  929951 aagtacttataggctaagtggagtttcttgcactacaagccacaaacaaactaactaac 929893  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 263 - 300
Target Start/End: Complemental strand, 7493620 - 7493583
Alignment:
Q  263 actaactaactaaccaacaaacatagttggatttatcc 300  Q
    ||||| ||||||||||||||||||||||| ||||||||    
T  7493620 actaagtaactaaccaacaaacatagttgaatttatcc 7493583  T

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Target: chr4 (Bit Score: 82; Significance: 1e-38; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 97 - 339
Target Start/End: Complemental strand, 53611450 - 53611216
Alignment:
Q  97 atctctacacactcacacttggagaggaaattacaaaagaatgataaaaactcttatattattgaatatgagatatatgagatgtgtgctatacaatcta 196  Q
    ||||||||||||||||| || ||||||||| |||||| ||||||||||| ||||| ||||||||||| ||||| |||||||   |||| |||  ||        
T  53611450 atctctacacactcacatttagagaggaaactacaaaggaatgataaaa-ctctt-tattattgaatttgagagatatgag---tgtgatattaaag--- 53611359  T
Q  197 catcaactgaatacaacagcgaagtatttataagctaagttgagtaacttgcactacaagccactaac----taactaactaaccaacaaacatagttgg 292  Q
        ||||||| |||| | | ||||| | ||| ||||||| |||| |||||||||||||| |||||||    ||||||||||||||||||||||||||||    
T  53611358 ----aactgaacacaaaaactaagtactcataggctaagtggagttacttgcactacaagtcactaaccaactaactaactaaccaacaaacatagttgg 53611263  T
Q  293 atttatcctctactaactaacattagaatatgaattatatttcaaca 339  Q
    |||||||| | |||||||||||||||||||||||||||| |||||||    
T  53611262 atttatccacaactaactaacattagaatatgaattatacttcaaca 53611216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 218 - 270
Target Start/End: Original strand, 29298574 - 29298626
Alignment:
Q  218 aagtatttataagctaagttgagtaacttgcactacaagccactaactaacta 270  Q
    ||||| ||||| |||||||||||| |||||| ||||| ||| |||||||||||    
T  29298574 aagtacttataggctaagttgagttacttgctctacatgccgctaactaacta 29298626  T

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Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 259 - 339
Target Start/End: Complemental strand, 31798858 - 31798779
Alignment:
Q  259 actaactaactaactaaccaacaaacatagttggatttatcctctactaactaacattagaatatgaattatatttcaaca 339  Q
    ||||| ||||||||||||||||||||||||||| |||||||| | | | ||||| |||||||||||||||||| |||||||    
T  31798858 actaaataactaactaaccaacaaacatagttgaatttatccac-aattactaatattagaatatgaattatacttcaaca 31798779  T

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Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 86 - 177
Target Start/End: Complemental strand, 34391204 - 34391113
Alignment:
Q  86 agattagaatgatctctacacactcacacttg-gagaggaaattacaaaagaatgataaaaactcttatattattgaatatgagatatatgag 177  Q
    |||| ||||||||| | ||||||||||||||  ||||||||| |||||| ||||||||||||| ||| ||||||||||| ||||| |||||||    
T  34391204 agatcagaatgatcgccacacactcacactttagagaggaaactacaaaggaatgataaaaacactt-tattattgaatgtgagagatatgag 34391113  T

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Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 58 - 96
Target Start/End: Original strand, 34486289 - 34486327
Alignment:
Q  58 agaacatgcacatacataatcgagagaaagattagaatg 96  Q
    |||||||||||||||||||||||||||||||||||||||    
T  34486289 agaacatgcacatacataatcgagagaaagattagaatg 34486327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 231 - 276
Target Start/End: Complemental strand, 31798913 - 31798868
Alignment:
Q  231 ctaagttgagtaacttgcactacaagccactaactaactaactaac 276  Q
    |||| ||||||||||||||||||||||||||||| ||| |||||||    
T  31798913 ctaaattgagtaacttgcactacaagccactaacaaacaaactaac 31798868  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 92 - 177
Target Start/End: Original strand, 34486361 - 34486445
Alignment:
Q  92 gaatgatctctacacactcacacttgga-gaggaaattacaaaagaatgataaaaactcttatattattgaatatgagatatatgag 177  Q
    |||||||||| ||||||||||| ||  | ||||||| |||||||||||||| ||||||||| ||||||| ||| ||||| |||||||    
T  34486361 gaatgatctccacacactcacattttaaagaggaaactacaaaagaatgat-aaaactctt-tattattaaatgtgagagatatgag 34486445  T

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Target: scaffold0330 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0330
Description:

Target: scaffold0330; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 54 - 96
Target Start/End: Original strand, 16982 - 17024
Alignment:
Q  54 tgatagaacatgcacatacataatcgagagaaagattagaatg 96  Q
    |||||||||||||||||||| |||| |||||||||||||||||    
T  16982 tgatagaacatgcacatacagaatcaagagaaagattagaatg 17024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0240 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0240
Description:

Target: scaffold0240; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 54 - 96
Target Start/End: Original strand, 1000 - 1042
Alignment:
Q  54 tgatagaacatgcacatacataatcgagagaaagattagaatg 96  Q
    |||||||||||||||||||| |||| |||||||||||||||||    
T  1000 tgatagaacatgcacatacagaatcaagagaaagattagaatg 1042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 54 - 100
Target Start/End: Complemental strand, 54017291 - 54017245
Alignment:
Q  54 tgatagaacatgcacatacataatcgagagaaagattagaatgatct 100  Q
    |||||||||| ||||||||| ||| ||||||||||||||||||||||    
T  54017291 tgatagaacacgcacatacaaaattgagagaaagattagaatgatct 54017245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 304 - 340
Target Start/End: Original strand, 496764 - 496800
Alignment:
Q  304 actaactaacattagaatatgaattatatttcaacac 340  Q
    |||||||||||||||||||||||| ||| ||||||||    
T  496764 actaactaacattagaatatgaataatacttcaacac 496800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 56 - 100
Target Start/End: Complemental strand, 54017242 - 54017198
Alignment:
Q  56 atagaacatgcacatacataatcgagagaaagattagaatgatct 100  Q
    |||||||||||| ||||||||| ||||||| ||||||| ||||||    
T  54017242 atagaacatgcatatacataattgagagaacgattagagtgatct 54017198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 267 - 300
Target Start/End: Original strand, 6600746 - 6600779
Alignment:
Q  267 actaactaaccaacaaacatagttggatttatcc 300  Q
    ||||||||||||||||||||||||||||||||||    
T  6600746 actaactaaccaacaaacatagttggatttatcc 6600779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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