View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21163_low_29 (Length: 440)
Name: NF21163_low_29
Description: NF21163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21163_low_29 |
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Alignment Details
Target: chr5 (Bit Score: 335; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 16 - 430
Target Start/End: Complemental strand, 43055544 - 43055122
Alignment:
| Q |
16 |
gcaactttataaatgcaaattttaaattttnnnnnnnncttaagcagaaaaaattagtttcaaatttaagtcgatgatattaacacaatagtgttggtta |
115 |
Q |
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| T |
43055544 |
gcaactttataaatgcaaattttaaattttaaaaaaaacttaagcagaaaaaattagtttcaa-tttaagtcgatgatattaacacaatagtgttggtta |
43055446 |
T |
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| Q |
116 |
tctattcagtaatctcttggtttacccaaaccgaacaatatcaatggatagcaacactcccaaacctcacct---------atagaaattttgtaaacat |
206 |
Q |
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| T |
43055445 |
tctattcagtaatctcttggtttacccaaaccgaacaatatcaatggatagcaacactcccaaacctcaccttcatcacctatagaaattttgtaaacat |
43055346 |
T |
|
| Q |
207 |
ccatatgggaatatagagaaacgcgtcaagagcgatgcacaaagcctatcattgttctaaaagaacttctactaaaatcgaaaaggacatatatttcgta |
306 |
Q |
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| T |
43055345 |
ccatatgggaatataaagaaacgcgtcaagagcgatgcacaaagcctatcattgttctaaaagaacttctactaaaatcgaaaaggacatatatttcgta |
43055246 |
T |
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| Q |
307 |
taaagaaaacatatcaacaagtagtatcatttcaattactctttggattgtccaaactaaagaatatatactctcagtactctagtataataatataact |
406 |
Q |
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| T |
43055245 |
taaagaaaacatatcaacaagtagtatcatttcaattactctttggattgtccaaactaaagaatatatactctcagtactctagtataataatataact |
43055146 |
T |
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| Q |
407 |
tcnnnnnnngtataagcacctatg |
430 |
Q |
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| T |
43055145 |
tcaaaaaaagtataagcacctatg |
43055122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 135 - 250
Target Start/End: Complemental strand, 14525093 - 14524979
Alignment:
| Q |
135 |
gtttacccaaaccgaacaatatcaatggatagcaacactcccaaacctcacctatagaaattttgtaaacatccatatgggaatatagagaaacgcgtca |
234 |
Q |
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| T |
14525093 |
gtttacccaaacccgactatatcaatggataacaacactcctaaatctcacct-tagaaattttgtaaacatccatatgggaatataaagaaatgcatct |
14524995 |
T |
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| Q |
235 |
agagcgatgcacaaag |
250 |
Q |
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| T |
14524994 |
agagcaatgctcaaag |
14524979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 317 - 374
Target Start/End: Complemental strand, 14524966 - 14524909
Alignment:
| Q |
317 |
atatcaacaagtagtatcatttcaattactctttggattgtccaaactaaagaatata |
374 |
Q |
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||||||||||||||||||||| || |||||| ||||||||||||| ||||||||| |
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| T |
14524966 |
atatcaacaagtagtatcattctggttgctctttagattgtccaaacttaagaatata |
14524909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 324 - 390
Target Start/End: Complemental strand, 44804708 - 44804643
Alignment:
| Q |
324 |
caagtagtatcatttcaattactctttggattgtccaaactaaagaatatatactctcagtactcta |
390 |
Q |
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| T |
44804708 |
caagtagtatcattccaattactctttggatcgttcaacct-aagactatacactctcagtactcta |
44804643 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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