View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21163_low_3 (Length: 695)
Name: NF21163_low_3
Description: NF21163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21163_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 327; Significance: 0; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 331 - 678
Target Start/End: Complemental strand, 47476848 - 47476501
Alignment:
| Q |
331 |
ctctgcaggttagtttgagttcctctccaagttcacatgataagattacaacactcatgattgtttgttcattaaataataattcgaacaactttcacta |
430 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47476848 |
ctctgcaggttagtttgagttcctctccaagttcacatgataagattacaacactcatgattgtttgttcattaaataataattcgaacaactttcacta |
47476749 |
T |
|
| Q |
431 |
attacgagttattcagtggaaccgattgctctttgctgtattgaattgcatgtttgtgttaatgagattttacttatttcaagcttttgttgatatagag |
530 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47476748 |
attacgagttattcagtggaaccgattgctctttgctgtattgaattgcatgtttgtgttaatgagattttacttatttcaagcttttgttgatatagag |
47476649 |
T |
|
| Q |
531 |
agcttggtattggaattgtaccatatagtccacttggtaaaggnnnnnnngctggcaaaggagttatcgaagatgtgccgagcttcatggtatagcattt |
630 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47476648 |
agcttggtattggaattgtaccatatagtccacttggtaaaggtttttttgctggcaaaggagttatcgaagatgtgccgagcttcatggtatagcattt |
47476549 |
T |
|
| Q |
631 |
tagtagttgaattgaaagtgtgtttctcttgcttgccatagaattact |
678 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47476548 |
tagtagttgaattgaaagtgtgtttctcttgcttgccatagaattact |
47476501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 1 - 324
Target Start/End: Original strand, 47477049 - 47477372
Alignment:
| Q |
1 |
tgaaataagccaaataatcttcaaatttgaattgtcaataactcaaccctacaagaccagcttataaaggtaggggtgtctcccatttataatttgagac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
47477049 |
tgaaataagccaaataatcttcaaatttgaattgtcaataactcaaccctacaagaccagtttataaaggtaggggtgtctcccatttataatttgagac |
47477148 |
T |
|
| Q |
101 |
tctcaacaaataatctaaccatatcaacatgtatatgtaacgtgttgccgtgtactatgctcaaatcaaatactagttttacataggaagaaatatcctt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47477149 |
tctcaacaaataatctaaccatatcaacatgtatatgtaacttgttgccgtgtactatgctcaaatcaaatactagttttacataggaagaaatatcctt |
47477248 |
T |
|
| Q |
201 |
aactgtatcctcaataggaacggttgtatcgactctgtgctgataatagagatcaatgtattcaacatcgagacgtttcaagctagcttcgcagcttgaa |
300 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
47477249 |
aactgtatcctcaataggcacggttgtatcgactctgtgctgataatagagatcaatgtattcaacattgagacgtttcaagctagcttcgcagcttgaa |
47477348 |
T |
|
| Q |
301 |
cgcacatactccggtgaacctttg |
324 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
47477349 |
cgcacatactccggtgaacctttg |
47477372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 1 - 124
Target Start/End: Original strand, 47473751 - 47473874
Alignment:
| Q |
1 |
tgaaataagccaaataatcttcaaatttgaattgtcaataactcaaccctacaagaccagcttataaaggtaggggtgtctcccatttataatttgagac |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| |||||| ||| ||||||||||||||||||| ||| |
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| T |
47473751 |
tgaaataagccaaataatcttcaaatttgaattgtcaataactcaaccctagaaaaccagcttatcaaggtatgggagtctcccatttataatttgggac |
47473850 |
T |
|
| Q |
101 |
tctcaacaaataatctaaccatat |
124 |
Q |
| |
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|||||||||||||| ||| ||||| |
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| T |
47473851 |
tctcaacaaataatgtaagcatat |
47473874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 205 - 322
Target Start/End: Original strand, 47486544 - 47486661
Alignment:
| Q |
205 |
gtatcctcaataggaacggttgtatcgactctgtgctgataatagagatcaatgtattcaacatcgagacgtttcaagctagcttcgcagcttgaacgca |
304 |
Q |
| |
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|||||||| ||||| || | |||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| |||||||| |
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| T |
47486544 |
gtatcctctataggcacagatgtatccactctgtgctgataatacagatcaatgtattcgacatcgagacgtttcaagctagcttcgcagcatgaacgca |
47486643 |
T |
|
| Q |
305 |
catactccggtgaacctt |
322 |
Q |
| |
|
|||| ||||||||||||| |
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| T |
47486644 |
cataatccggtgaacctt |
47486661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 184 - 320
Target Start/End: Original strand, 47473898 - 47474034
Alignment:
| Q |
184 |
taggaagaaatatccttaactgtatcctcaataggaacggttgtatcgactctgtgctgataatagagatcaatgtattcaacatcgagacgtttcaagc |
283 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| || | ||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47473898 |
taggaagaaatatccttaactgtatcctcaatagacacagaagtatcaattctgtgctgataatagagatcaatgtattcaacatcgagacgtttcaagc |
47473997 |
T |
|
| Q |
284 |
tagcttcgcagcttgaacgcacatactccggtgaacc |
320 |
Q |
| |
|
||||||| || | || ||||| ||||| |||||||| |
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|
| T |
47473998 |
tagcttcacaacacgagcgcacgtactcaggtgaacc |
47474034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 476 - 568
Target Start/End: Complemental strand, 47473460 - 47473367
Alignment:
| Q |
476 |
ttgcatgtttgtgttaa-tgagattttacttatttcaagcttttgttgatatagagagcttggtattggaattgtaccatatagtccacttggt |
568 |
Q |
| |
|
|||| |||||||||||| || || || ||| |||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| |
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| T |
47473460 |
ttgcttgtttgtgttaaatgtgacttcactaatttaaagcttttgttgatacagagagcttggtattggaattgtaccatatagtcctcttggt |
47473367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 502 - 568
Target Start/End: Complemental strand, 47486147 - 47486081
Alignment:
| Q |
502 |
acttatttcaagcttttgttgatatagagagcttggtattggaattgtaccatatagtccacttggt |
568 |
Q |
| |
|
|||||||| ||||||||||||||| |||||||||||||||||||||||| |||||||||| |||||| |
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| T |
47486147 |
acttatttaaagcttttgttgatacagagagcttggtattggaattgtaacatatagtcctcttggt |
47486081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 331 - 365
Target Start/End: Complemental strand, 47473550 - 47473516
Alignment:
| Q |
331 |
ctctgcaggttagtttgagttcctctccaagttca |
365 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
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|
| T |
47473550 |
ctctgcaggttagtttgagttcctctccaagttca |
47473516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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