View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21163_low_30 (Length: 432)
Name: NF21163_low_30
Description: NF21163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21163_low_30 |
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Alignment Details
Target: chr3 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 1 - 412
Target Start/End: Complemental strand, 6281830 - 6281411
Alignment:
| Q |
1 |
aatttgaaaagttatgcaaatgttctggattttctagttttgaggttgtttgtcttgccttttctgccctaggagtgatggaattttctaaataaataag |
100 |
Q |
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| T |
6281830 |
aatttgaaaagttatgcaaatgttctggattttctagttttgaggttgtttgtcttgccttttctgccctaggagtgatggaattttctaaataaataag |
6281731 |
T |
|
| Q |
101 |
caagtattatgtaaggaatataatagatagtatttataccataaatttggcttgtctaaaagtgatcatagaataaagttataaaataaagggttcatat |
200 |
Q |
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| T |
6281730 |
caagtattatgtaaggaatataatagatagtatttataccataaatttggcttgtctaaaagtgatcatagaataaagttataaaataaagggttcatat |
6281631 |
T |
|
| Q |
201 |
ttcaatacatgtttataatttgttatgtaatgtatatatgatatctattattgaatattaatttgttatgaataaataaaagtaacat--tttacaaatt |
298 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| | |||||||| |
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| T |
6281630 |
ttcaatacatgtttataatttgttatgtaatgtatatatgatatctattattgaatattgatttgttatgaataaataagagtaacattctctacaaatt |
6281531 |
T |
|
| Q |
299 |
ctagctcgactacaaaatatcgaaattgttataccataaactcaaagaaaaccgtaactcggaaaataatt------atatctgaagtatctatcaaaat |
392 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |||||| |||||||||||||||| |
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| T |
6281530 |
ctaactcgactacaaaatatcgaaattgttataccataaactcaaagaaaatcgtaactaggaaaataattgaagacatatctcaagtatctatcaaaat |
6281431 |
T |
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| Q |
393 |
taggtaaactataccatgtt |
412 |
Q |
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|||| ||||||||||||||| |
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| T |
6281430 |
taggcaaactataccatgtt |
6281411 |
T |
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