View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21163_low_34 (Length: 407)
Name: NF21163_low_34
Description: NF21163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21163_low_34 |
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Alignment Details
Target: chr8 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 20 - 399
Target Start/End: Complemental strand, 295419 - 295035
Alignment:
| Q |
20 |
caagcaaagagagataaaataaaacaggaagacgtggcaagagaggtgcctatgatgatgttactatgttaattgtagtttgaacttggaacgaatgaat |
119 |
Q |
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| T |
295419 |
caagcaaagagagataaaataaaacaggaagacgtggcaagagaggtgcctatgatgatgttactatgttaattgtagtttgaacttggaacgaatgaat |
295320 |
T |
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| Q |
120 |
gaatgagcatcatatcatatcata-----acaatatggcttctttgctccatccaactccaactgttaccactatacttaagcatcgaacatcaacaatc |
214 |
Q |
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| T |
295319 |
gaatgagcatcatatcatatcatatcataacaatatggcttctttgctccatccaactccaactgttaccactatacttaagcatcgaacatcaacaatc |
295220 |
T |
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| Q |
215 |
tgtttcttctgtcccttaaaacctacaaatgtttctttcttaactaacacaaaccgtgtcaataccaacactacaaagtgtaatgcattttttgataata |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
295219 |
tgtttcttctgtcccttaaaacctacaaatgtttctttcttaactaacacaaaccgtgtcaataccaacactacaaagtgtaatgcattttttgataata |
295120 |
T |
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| Q |
315 |
atgtcaccagtggtttgttggaggttggtgggggccacattccttctttccttcgatcaggactacttcagtttcaagaattatc |
399 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
295119 |
atgtcaccagtggtttgttggaggttggtggggaccacattccttctttccttcgatcaggactacttcagtttcaagaattatc |
295035 |
T |
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