View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21163_low_35 (Length: 395)
Name: NF21163_low_35
Description: NF21163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21163_low_35 |
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Alignment Details
Target: chr6 (Bit Score: 171; Significance: 1e-91; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 30 - 376
Target Start/End: Complemental strand, 406195 - 405850
Alignment:
| Q |
30 |
aacaacgttttccttgttaatttctaccttaatattctttccattcgcaagcttctcgtcattttctaccttaacttcagcaataggtggccccatttgg |
129 |
Q |
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| T |
406195 |
aacaatgtttttattgttactttctacattaatattctttccattagcaagcttctcgtcattttctcccttaacttcagcaataggtggccccatttgg |
406096 |
T |
|
| Q |
130 |
cctctgaaacaattcatattcatacaattaaattcaacattgatcatcttgacaagtccattc-aatata-atatataagatggc-caaataaacaaatt |
226 |
Q |
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| T |
406095 |
cctctgaaacaat-----ttcatacaataaaatataacatcaatcatcttgataaacaaattctaatgtcgatatctaacattgatcaactaatgaaaat |
406001 |
T |
|
| Q |
227 |
gta-atttggaagtcaaaagcacacattaagtggttacctccatagtttttgtatgacctctcccttggcaatgtgttgatccagcaaggcagacacatc |
325 |
Q |
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| T |
406000 |
atccatgtggaagtcaaaagcacacattaagtggttacctccatagtttttgtatgacctctcccttggcaatatgttgatccagcaaggcaggcacatc |
405901 |
T |
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| Q |
326 |
attaggagtaacatagccatacatgtaattaaatattaggtacgcactaca |
376 |
Q |
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| T |
405900 |
attaggagtaacatagccatacatgtaattaaatattaggtacgcactaca |
405850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 30 - 259
Target Start/End: Original strand, 397972 - 398185
Alignment:
| Q |
30 |
aacaacgttttccttgttaatttctaccttaatattctttccattcgcaagcttctcgtcattttctaccttaacttcagcaataggtggccccatttgg |
129 |
Q |
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| T |
397972 |
aacaacgttttcattgttactttctacattaatattctttccattagcaagcttctcgtcattttctaccttaacttcagcaataggtggccc------- |
398064 |
T |
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| Q |
130 |
cctctgaaacaattcatattcatacaattaaattcaacattgatcatcttgacaagtccattcaatataatatataagatggccaaataaacaaattgta |
229 |
Q |
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| T |
398065 |
----------aattcatattcatacaattaaattcaacattgatcatcttgacaagtccattcaatataatatataagatggccaaataaacaaattgta |
398154 |
T |
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| Q |
230 |
atttggaagtc-aaaagcacacattaagtgg |
259 |
Q |
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| T |
398155 |
atgtggaagtcaaaaagcacacattaagtgg |
398185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 254 - 361
Target Start/End: Complemental strand, 417054 - 416947
Alignment:
| Q |
254 |
aagtggttacctccatagtttttgtatgacctctcccttggcaatgtgttgatccagcaaggcagacacatcattaggagtaacatagccatacatgtaa |
353 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||| || |||||||||| |||||||||||||||||||||||||||| ||||| |
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| T |
417054 |
aagtggtcacctccatagtttttgtatgacctctcccttggcaatgtgttggtctagcaaggcaggcacatcattaggagtaacatagccatacctgtaa |
416955 |
T |
|
| Q |
354 |
ttaaatat |
361 |
Q |
| |
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|||||||| |
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| T |
416954 |
ttaaatat |
416947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 292 - 380
Target Start/End: Original strand, 398183 - 398271
Alignment:
| Q |
292 |
tggcaatgtgttgatccagcaaggcagacacatcattaggagtaacatagccatacatgtaattaaatattaggtacgcactacatttt |
380 |
Q |
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| T |
398183 |
tggcaatgtgttgatccagcaaggcagacacatcattaggagtaacataaccatacatgtaattaaatattaggtacgcactacatttt |
398271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 82 - 143
Target Start/End: Complemental strand, 418462 - 418401
Alignment:
| Q |
82 |
ttctcgtcattttctaccttaacttcagcaataggtggccccatttggcctctgaaacaatt |
143 |
Q |
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| T |
418462 |
ttctggtcatcttctcccttaagttcagcaacaggttgccccatttgacctctgaaacaatt |
418401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 289 - 347
Target Start/End: Original strand, 22513682 - 22513740
Alignment:
| Q |
289 |
ccttggcaatgtgttgatccagcaaggcagacacatcattaggagtaacatagccatac |
347 |
Q |
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| T |
22513682 |
ccttggcaatgtgttggtctagcaaggcaagcacatcattacgagtaacatagccatac |
22513740 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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