View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21163_low_36 (Length: 379)

Name: NF21163_low_36
Description: NF21163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21163_low_36
NF21163_low_36
[»] chr4 (11 HSPs)
chr4 (40-225)||(3445480-3445665)
chr4 (266-371)||(3672361-3672465)
chr4 (266-371)||(6112717-6112820)
chr4 (266-371)||(28093096-28093200)
chr4 (266-371)||(7217852-7217956)
chr4 (266-371)||(44275793-44275896)
chr4 (266-357)||(49243916-49244005)
chr4 (266-352)||(21390956-21391040)
chr4 (267-357)||(35545013-35545102)
chr4 (228-264)||(3445690-3445726)
chr4 (266-333)||(46192484-46192550)
[»] chr5 (10 HSPs)
chr5 (266-370)||(13347216-13347319)
chr5 (266-371)||(39371014-39371118)
chr5 (266-371)||(2237363-2237467)
chr5 (282-371)||(9408054-9408143)
chr5 (266-371)||(14831631-14831735)
chr5 (266-371)||(40887942-40888046)
chr5 (266-371)||(42683686-42683790)
chr5 (266-370)||(31800646-31800748)
chr5 (266-371)||(1815620-1815720)
chr5 (280-371)||(27553387-27553477)
[»] chr3 (11 HSPs)
chr3 (289-371)||(22894767-22894849)
chr3 (266-371)||(48200772-48200876)
chr3 (267-371)||(36749493-36749596)
chr3 (266-371)||(34749898-34750002)
chr3 (266-371)||(36370338-36370442)
chr3 (266-371)||(44000076-44000180)
chr3 (266-371)||(21559648-21559752)
chr3 (266-371)||(46111944-46112048)
chr3 (266-371)||(51339784-51339887)
chr3 (266-366)||(29472901-29472999)
chr3 (266-365)||(30735496-30735594)
[»] chr7 (17 HSPs)
chr7 (266-371)||(26972203-26972307)
chr7 (266-371)||(34108513-34108617)
chr7 (266-371)||(36346565-36346668)
chr7 (267-371)||(30887787-30887890)
chr7 (266-371)||(28307495-28307599)
chr7 (266-371)||(45782660-45782764)
chr7 (266-364)||(29953572-29953669)
chr7 (266-371)||(7699883-7699987)
chr7 (266-371)||(7700081-7700185)
chr7 (266-371)||(7700279-7700383)
chr7 (266-371)||(7700477-7700581)
chr7 (266-371)||(34828152-34828255)
chr7 (266-371)||(5811164-5811267)
chr7 (266-371)||(31148377-31148480)
chr7 (267-371)||(21807324-21807426)
chr7 (266-357)||(42220964-42221053)
chr7 (266-341)||(13108264-13108337)
[»] scaffold0062 (1 HSPs)
scaffold0062 (266-371)||(6805-6909)
[»] chr8 (10 HSPs)
chr8 (266-371)||(42162685-42162789)
chr8 (280-371)||(44081867-44081958)
chr8 (266-371)||(31318892-31318996)
chr8 (266-371)||(10203751-10203855)
chr8 (266-370)||(43186115-43186217)
chr8 (266-365)||(12665438-12665536)
chr8 (266-371)||(18184640-18184743)
chr8 (280-371)||(30432426-30432516)
chr8 (256-371)||(36189303-36189415)
chr8 (266-360)||(33726110-33726202)
[»] chr1 (4 HSPs)
chr1 (267-371)||(39249864-39249967)
chr1 (266-371)||(2509111-2509215)
chr1 (266-368)||(34307138-34307239)
chr1 (266-371)||(46901735-46901839)
[»] chr2 (7 HSPs)
chr2 (266-371)||(33732656-33732759)
chr2 (266-371)||(44958200-44958304)
chr2 (266-371)||(16089909-16090011)
chr2 (266-371)||(37498863-37498969)
chr2 (288-371)||(14573082-14573165)
chr2 (268-371)||(3830900-3831001)
chr2 (261-333)||(36315686-36315757)
[»] chr6 (6 HSPs)
chr6 (261-370)||(15345655-15345762)
chr6 (266-371)||(3986906-3987009)
chr6 (266-370)||(3118047-3118150)
chr6 (266-371)||(13697655-13697758)
chr6 (266-371)||(24208531-24208634)
chr6 (266-371)||(14023021-14023124)
[»] scaffold0043 (1 HSPs)
scaffold0043 (266-341)||(87163-87236)


Alignment Details
Target: chr4 (Bit Score: 165; Significance: 4e-88; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 40 - 225
Target Start/End: Original strand, 3445480 - 3445665
Alignment:
Q  40 attatgtcacaaaacatcctttgccatctctttcatgaatctggtttgtgaaggattcttaatgttctttgaatctctgatggatgcaatttggaagaga 139  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3445480 attatgtcacaaaacatcctttgccatctctttcatgaatctggtttgtgaaggattcttaatgttctttgaatctctgatggatgcaatttggaagaga 3445579  T
Q  140 aaaatgagaagnnnnnnngtatggctgatatgataggaatcggttgtgattgtggggaataaattaaattattcttaattggtact 225  Q
    |||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3445580 aaaatgagaagaaaaaaagtatggctgatatgataggaatcggttgtgattgtggggaataaattaaattattcttaattggtact 3445665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 266 - 371
Target Start/End: Complemental strand, 3672465 - 3672361
Alignment:
Q  266 gaaaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatccttttt 365  Q
    ||||||||||||| ||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  3672465 gaaaaagataggt-agataccctttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcacccttttt 3672367  T
Q  366 catctc 371  Q
    ||||||    
T  3672366 catctc 3672361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 266 - 371
Target Start/End: Complemental strand, 6112820 - 6112717
Alignment:
Q  266 gaaaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatccttttt 365  Q
    ||||||||||||| ||||||  ||||||||||||||||||||||||| | |||||||||||||||||||||||||| |||||||||||||||||||||||    
T  6112820 gaaaaagataggt-agacactctttttcatacacttcttatgtacactc-catgtattaggggtatttgagtaattttacatcatatcatcatccttttt 6112723  T
Q  366 catctc 371  Q
    ||||||    
T  6112722 catctc 6112717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 266 - 371
Target Start/End: Original strand, 28093096 - 28093200
Alignment:
Q  266 gaaaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatccttttt 365  Q
    ||||||||||||| ||||| | ||||||||||||||||||||||||||| ||||||||||||||||||||||| || ||||||||||||||| |||||||    
T  28093096 gaaaaagataggt-agacatcctttttcatacacttcttatgtacacccccatgtattaggggtatttgagtatttttacatcatatcatcacccttttt 28093194  T
Q  366 catctc 371  Q
    ||||||    
T  28093195 catctc 28093200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 266 - 371
Target Start/End: Complemental strand, 7217956 - 7217852
Alignment:
Q  266 gaaaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatccttttt 365  Q
    ||||||||||||| | ||||| |||||||||||| |||||||||||||||||||| |||  ||||||| ||||||| ||||||||||||||| |||||||    
T  7217956 gaaaaagataggtaa-acaccctttttcatacacctcttatgtacaccctcatgtgttataggtattttagtaattttacatcatatcatcacccttttt 7217858  T
Q  366 catctc 371  Q
     |||||    
T  7217857 tatctc 7217852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 266 - 371
Target Start/End: Complemental strand, 44275896 - 44275793
Alignment:
Q  266 gaaaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatccttttt 365  Q
    ||||||||||| | ||||||| |||||||||||| |||||||||||||| ||||| |||||||||||| ||||||| ||||||||||||||| |||||||    
T  44275896 gaaaaagatagat-agacaccctttttcatacacctcttatgtacaccc-catgtgttaggggtattttagtaattttacatcatatcatcacccttttt 44275799  T
Q  366 catctc 371  Q
     |||||    
T  44275798 aatctc 44275793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 266 - 357
Target Start/End: Complemental strand, 49244005 - 49243916
Alignment:
Q  266 gaaaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatca 357  Q
    |||||||||| || ||||| | |||||||||||| |||||||||||| | |||||||||||||||||| ||||||| |||||||||||||||    
T  49244005 gaaaaagatatgt-agacatcctttttcatacacctcttatgtacactc-catgtattaggggtattttagtaattttacatcatatcatca 49243916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 266 - 352
Target Start/End: Original strand, 21390956 - 21391040
Alignment:
Q  266 gaaaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatat 352  Q
    ||||||||||||| ||||||| |||||||||||| | ||||||||||| |||||| |||||||||||| ||||||| ||||||||||    
T  21390956 gaaaaagataggt-agacaccctttttcatacaccttttatgtacacc-tcatgtgttaggggtattttagtaattttacatcatat 21391040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 267 - 357
Target Start/End: Complemental strand, 35545102 - 35545013
Alignment:
Q  267 aaaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggta-tttgagtaattatacatcatatcatca 357  Q
    |||||||||||| ||||||| ||||||||||||  ||||||||||| | ||||| ||||||||| ||| ||||||| |||||||||||||||    
T  35545102 aaaaagataggt-agacaccctttttcatacaccacttatgtacactc-catgtgttaggggtatttttagtaattttacatcatatcatca 35545013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 228 - 264
Target Start/End: Original strand, 3445690 - 3445726
Alignment:
Q  228 ttgattagaatgcttaattccttttattatttttata 264  Q
    ||||||||||||||||||||||||||||| |||||||    
T  3445690 ttgattagaatgcttaattccttttattaattttata 3445726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 266 - 333
Target Start/End: Complemental strand, 46192550 - 46192484
Alignment:
Q  266 gaaaaagataggtcagacacc-ttttttcatacacttcttatgtacaccctcatgtattaggggtattt 333  Q
    ||||||||||||| ||||||| |||||| |||||| |||||||||||||| ||||||  ||||||||||    
T  46192550 gaaaaagataggt-agacacccttttttgatacacctcttatgtacaccc-catgtaccaggggtattt 46192484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 85; Significance: 2e-40; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 266 - 370
Target Start/End: Complemental strand, 13347319 - 13347216
Alignment:
Q  266 gaaaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatccttttt 365  Q
    ||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||    
T  13347319 gaaaaagataggt-agacaccctttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcactcttttt 13347221  T
Q  366 catct 370  Q
    |||||    
T  13347220 catct 13347216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 266 - 371
Target Start/End: Complemental strand, 39371118 - 39371014
Alignment:
Q  266 gaaaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatccttttt 365  Q
    ||||||||||||| ||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| |||||||    
T  39371118 gaaaaagataggt-agacaccctttttcatacacttcttatgtacacccccatgtattaggggtatttgagtaattttacatcatatcatcacccttttt 39371020  T
Q  366 catctc 371  Q
    ||||||    
T  39371019 catctc 39371014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 266 - 371
Target Start/End: Complemental strand, 2237467 - 2237363
Alignment:
Q  266 gaaaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatccttttt 365  Q
    ||||||||||||| ||||||| ||||||||||||||||||||||||||| || ||||||||||||||||||||||| ||||||||||||||| |||||||    
T  2237467 gaaaaagataggt-agacaccctttttcatacacttcttatgtacacccccaagtattaggggtatttgagtaattttacatcatatcatcacccttttt 2237369  T
Q  366 catctc 371  Q
    ||||||    
T  2237368 catctc 2237363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 282 - 371
Target Start/End: Original strand, 9408054 - 9408143
Alignment:
Q  282 acaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatcctttttcatctc 371  Q
    ||||| ||||||||||||||||||||||||||| ||| |||||||||||||||||||||| ||||||||||||||| |||||||||||||    
T  9408054 acaccatttttcatacacttcttatgtacacccccatatattaggggtatttgagtaattttacatcatatcatcaccctttttcatctc 9408143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 266 - 371
Target Start/End: Complemental strand, 14831735 - 14831631
Alignment:
Q  266 gaaaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatccttttt 365  Q
    ||||||||||||| | ||||| |||||||||||||||||||||||||||  | ||||||||||||||||| ||||| ||||||||||||||| |||||||    
T  14831735 gaaaaagataggtaa-acaccctttttcatacacttcttatgtacacccctacgtattaggggtatttgaataattttacatcatatcatcacccttttt 14831637  T
Q  366 catctc 371  Q
    ||||||    
T  14831636 catctc 14831631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 266 - 371
Target Start/End: Original strand, 40887942 - 40888046
Alignment:
Q  266 gaaaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatccttttt 365  Q
    ||||||||||||| ||||||| |||||||||||| |||||||||||||| ||| |||||| ||||||| ||||||| |||||||||||| || |||||||    
T  40887942 gaaaaagataggt-agacaccctttttcatacacctcttatgtacacccccatctattagaggtattttagtaattttacatcatatcaccacccttttt 40888040  T
Q  366 catctc 371  Q
    ||||||    
T  40888041 catctc 40888046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 266 - 371
Target Start/End: Complemental strand, 42683790 - 42683686
Alignment:
Q  266 gaaaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatccttttt 365  Q
    ||||||||||| | ||||| | |||||||||||| |||||||||||||| ||| |||||||||||||| ||||||| |||||||||||| ||||||||||    
T  42683790 gaaaaagatagat-agacatcctttttcatacacctcttatgtacacccccatatattaggggtattttagtaattttacatcatatcaccatccttttt 42683692  T
Q  366 catctc 371  Q
    ||||||    
T  42683691 catctc 42683686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 266 - 370
Target Start/End: Complemental strand, 31800748 - 31800646
Alignment:
Q  266 gaaaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatccttttt 365  Q
    |||||||||||| |||||||| |||||||||||| |||| ||||||||| ||| | |||||||||||| ||||||| ||||||||||||||| || ||||    
T  31800748 gaaaaagatagg-cagacaccctttttcatacacctcttgtgtacaccc-catatgttaggggtattttagtaattttacatcatatcatcacccctttt 31800651  T
Q  366 catct 370  Q
    |||||    
T  31800650 catct 31800646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 266 - 371
Target Start/End: Original strand, 1815620 - 1815720
Alignment:
Q  266 gaaaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatccttttt 365  Q
    ||||||||||||| ||||||||||||||||| |      ||||||||||| |||| |||||||||||| ||||||| ||||||||||||||| || ||||    
T  1815620 gaaaaagataggt-agacaccttttttcataaagaa---atgtacaccct-atgtgttaggggtattttagtaattttacatcatatcatcacccctttt 1815714  T
Q  366 catctc 371  Q
    ||||||    
T  1815715 catctc 1815720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 280 - 371
Target Start/End: Original strand, 27553387 - 27553477
Alignment:
Q  280 agacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatcctttttcatctc 371  Q
    ||||||| |||||||||||| ||||||||||||||| |||| ||||| |||||| ||||||| ||||||| || |||| | |||||| ||||    
T  27553387 agacaccctttttcatacacctcttatgtacaccct-atgtgttaggagtattttagtaattttacatcagataatcaccatttttcttctc 27553477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 83; Significance: 3e-39; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 289 - 371
Target Start/End: Complemental strand, 22894849 - 22894767
Alignment:
Q  289 ttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatcctttttcatctc 371  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22894849 ttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatcctttttcatctc 22894767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 266 - 371
Target Start/End: Complemental strand, 48200876 - 48200772
Alignment:
Q  266 gaaaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatccttttt 365  Q
    ||||||||||||| ||||| | |||||||||||||| |||||||||||| ||||||||| |||||||||||||||| |||||||||||||||||||||||    
T  48200876 gaaaaagataggt-agacatcctttttcatacactttttatgtacacccccatgtattatgggtatttgagtaattttacatcatatcatcatccttttt 48200778  T
Q  366 catctc 371  Q
    ||||||    
T  48200777 catctc 48200772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 267 - 371
Target Start/End: Complemental strand, 36749596 - 36749493
Alignment:
Q  267 aaaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatcctttttc 366  Q
    |||||||||||| ||||||  |||||||||||||| ||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| ||||||||    
T  36749596 aaaaagataggt-agacactctttttcatacactttttatgtacaccctcatgtattagaggtatttgagtaattttacatcatatcatcaccctttttc 36749498  T
Q  367 atctc 371  Q
    |||||    
T  36749497 atctc 36749493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 266 - 371
Target Start/End: Original strand, 34749898 - 34750002
Alignment:
Q  266 gaaaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatccttttt 365  Q
    |||||||||||  |||||| | |||||||||||||||||||||||||||  ||||||||||||||||||||||||| ||||||||||||||| |||||||    
T  34749898 gaaaaagatagc-cagacatcctttttcatacacttcttatgtacacccctatgtattaggggtatttgagtaattttacatcatatcatcacccttttt 34749996  T
Q  366 catctc 371  Q
    ||||||    
T  34749997 catctc 34750002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 266 - 371
Target Start/End: Original strand, 36370338 - 36370442
Alignment:
Q  266 gaaaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatccttttt 365  Q
    ||||||||||||| ||| ||  |||||||||||||| |||| |||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||    
T  36370338 gaaaaagataggt-agatactctttttcatacactttttatatacaccctcatgtattaggggtatttgagtaattttacatcatatcatcacccttttt 36370436  T
Q  366 catctc 371  Q
    ||||||    
T  36370437 catctc 36370442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 266 - 371
Target Start/End: Complemental strand, 44000180 - 44000076
Alignment:
Q  266 gaaaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatccttttt 365  Q
    ||||||||||||| ||||||  |||||||||||||| |||||||| |||||||||||||| ||||||||||||||| ||||||||||||||| |||||||    
T  44000180 gaaaaagataggt-agacactctttttcatacactttttatgtacgccctcatgtattagaggtatttgagtaattttacatcatatcatcacccttttt 44000082  T
Q  366 catctc 371  Q
    ||||||    
T  44000081 catctc 44000076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 266 - 371
Target Start/End: Complemental strand, 21559752 - 21559648
Alignment:
Q  266 gaaaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatccttttt 365  Q
    ||||||||||| | ||||||| |||||||||||| |||||||||||||| ||||| |||||||||||| ||||||| ||||||||||||| | |||||||    
T  21559752 gaaaaagatagat-agacaccatttttcatacacctcttatgtacacccccatgtgttaggggtattttagtaattttacatcatatcattacccttttt 21559654  T
Q  366 catctc 371  Q
    ||||||    
T  21559653 catctc 21559648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 266 - 371
Target Start/End: Original strand, 46111944 - 46112048
Alignment:
Q  266 gaaaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatccttttt 365  Q
    ||||||||||||| ||||||| |||||||||||| | |||| |||| || |||||||||||||||||| ||||||| ||||||||||||||| |||||||    
T  46111944 gaaaaagataggt-agacaccatttttcatacaccttttatatacatccccatgtattaggggtattttagtaattttacatcatatcatcacccttttt 46112042  T
Q  366 catctc 371  Q
    ||||||    
T  46112043 catctc 46112048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 266 - 371
Target Start/End: Original strand, 51339784 - 51339887
Alignment:
Q  266 gaaaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatccttttt 365  Q
    ||||||||||||| ||||||| |||||||||||| ||||||||||||  |||||| |||| ||||||| ||||||| ||||||||||||||| |||||||    
T  51339784 gaaaaagataggt-agacaccctttttcatacacctcttatgtacaca-tcatgtgttagaggtattttagtaattttacatcatatcatcacccttttt 51339881  T
Q  366 catctc 371  Q
    ||||||    
T  51339882 catctc 51339887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 266 - 366
Target Start/End: Complemental strand, 29472999 - 29472901
Alignment:
Q  266 gaaaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatccttttt 365  Q
    ||||||||||||| ||||| | ||||||||||||  |||||| |||||| ||||| |||||||||||| ||||||| |||||||||||||||||| ||||    
T  29472999 gaaaaagataggt-agacatcctttttcatacaccacttatgcacaccc-catgtgttaggggtattttagtaattttacatcatatcatcatccctttt 29472902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 266 - 365
Target Start/End: Original strand, 30735496 - 30735594
Alignment:
Q  266 gaaaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggta-tttgagtaattatacatcatatcatcatcctttt 364  Q
    ||||||||||||| ||||||| ||||||||||||  ||||||||||| | ||||| ||||||||| ||| |||||||  |||||||||||||| ||||||    
T  30735496 gaaaaagataggt-agacaccctttttcatacaccacttatgtacactc-catgtgttaggggtatttttagtaatttaacatcatatcatcaccctttt 30735593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 82; Significance: 1e-38; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 266 - 371
Target Start/End: Original strand, 26972203 - 26972307
Alignment:
Q  266 gaaaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatccttttt 365  Q
    ||||||||||||| ||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| |||||||    
T  26972203 gaaaaagataggt-agacaccctttttcatacacttcttatgtacacccccatgtattaggggtatttgagtaattttacatcatatcatcacccttttt 26972301  T
Q  366 catctc 371  Q
    ||||||    
T  26972302 catctc 26972307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 266 - 371
Target Start/End: Complemental strand, 34108617 - 34108513
Alignment:
Q  266 gaaaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatccttttt 365  Q
    ||||||||||||| | ||||| ||||||||||||||||||||||||| | |||||||||||||||||||||||||| ||||||||||||||| |||||||    
T  34108617 gaaaaagataggtaa-acaccctttttcatacacttcttatgtacactcccatgtattaggggtatttgagtaattttacatcatatcatcacccttttt 34108519  T
Q  366 catctc 371  Q
    ||||||    
T  34108518 catctc 34108513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 266 - 371
Target Start/End: Original strand, 36346565 - 36346668
Alignment:
Q  266 gaaaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatccttttt 365  Q
    ||||||||||||| ||||||| |||||||||||| |||||||||||||||||||| |||||||||||| ||||||| ||||||||||||||| |||||||    
T  36346565 gaaaaagataggt-agacaccctttttcatacacctcttatgtacaccctcatgtgttaggggtattttagtaattttacatcatatcatca-ccttttt 36346662  T
Q  366 catctc 371  Q
    ||||||    
T  36346663 catctc 36346668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 267 - 371
Target Start/End: Complemental strand, 30887890 - 30887787
Alignment:
Q  267 aaaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatcctttttc 366  Q
    ||||||||| || ||||||| ||||||||||||||||||| ||||||| |||||||||| ||||||| ||||||| ||||||||||||||| ||||||||    
T  30887890 aaaaagatacgtaagacaccctttttcatacacttcttatatacaccc-catgtattagaggtatttaagtaattttacatcatatcatcaccctttttc 30887792  T
Q  367 atctc 371  Q
    |||||    
T  30887791 atctc 30887787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 266 - 371
Target Start/End: Original strand, 28307495 - 28307599
Alignment:
Q  266 gaaaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatccttttt 365  Q
    ||||||||||||| ||||| |||||||||||||| |||||||||||||| ||| | ||| |||||||| ||||||| ||||||||||||||| |||||||    
T  28307495 gaaaaagataggt-agacatcttttttcatacacctcttatgtacacccccatatgttaagggtattttagtaattttacatcatatcatcacccttttt 28307593  T
Q  366 catctc 371  Q
    ||||||    
T  28307594 catctc 28307599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 266 - 371
Target Start/End: Original strand, 45782660 - 45782764
Alignment:
Q  266 gaaaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatccttttt 365  Q
    ||||||||||||| ||||||| ||||| |||||||| |||||||||| | ||||| |||||||||||| ||||||| ||||||||||||||| |||||||    
T  45782660 gaaaaagataggt-agacacccttttttatacactttttatgtacactcccatgtgttaggggtattttagtaattttacatcatatcatcacccttttt 45782758  T
Q  366 catctc 371  Q
    ||||||    
T  45782759 catctc 45782764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 266 - 364
Target Start/End: Original strand, 29953572 - 29953669
Alignment:
Q  266 gaaaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatcctttt 364  Q
    ||||||||||||| ||||||| |||||||||||||||||||||| ||   |||||||||||| ||||||||||||| ||||||||||||||| ||||||    
T  29953572 gaaaaagataggt-agacaccctttttcatacacttcttatgtagacttccatgtattagggatatttgagtaattttacatcatatcatcaccctttt 29953669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 266 - 371
Target Start/End: Original strand, 7699883 - 7699987
Alignment:
Q  266 gaaaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatccttttt 365  Q
    ||||||||||||| | ||||| |||||||||||| |||||| |||||| |||||| ||| |||||||| ||||||| || ||||||||||||||||||||    
T  7699883 gaaaaagataggtaa-acaccctttttcatacacctcttatatacaccttcatgtgttatgggtattttagtaattttatatcatatcatcatccttttt 7699981  T
Q  366 catctc 371  Q
     |||||    
T  7699982 tatctc 7699987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 266 - 371
Target Start/End: Original strand, 7700081 - 7700185
Alignment:
Q  266 gaaaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatccttttt 365  Q
    ||||||||||||| | ||||| |||||||||||| |||||| |||||| |||||| ||| |||||||| ||||||| || ||||||||||||||||||||    
T  7700081 gaaaaagataggtaa-acaccctttttcatacacctcttatatacaccttcatgtgttatgggtattttagtaattttatatcatatcatcatccttttt 7700179  T
Q  366 catctc 371  Q
     |||||    
T  7700180 tatctc 7700185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 266 - 371
Target Start/End: Original strand, 7700279 - 7700383
Alignment:
Q  266 gaaaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatccttttt 365  Q
    ||||||||||||| | ||||| |||||||||||| |||||| |||||| |||||| ||| |||||||| ||||||| || ||||||||||||||||||||    
T  7700279 gaaaaagataggtaa-acaccctttttcatacacctcttatatacaccttcatgtgttatgggtattttagtaattttatatcatatcatcatccttttt 7700377  T
Q  366 catctc 371  Q
     |||||    
T  7700378 tatctc 7700383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 266 - 371
Target Start/End: Original strand, 7700477 - 7700581
Alignment:
Q  266 gaaaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatccttttt 365  Q
    ||||||||||||| | ||||| |||||||||||| |||||| |||||| |||||| ||| |||||||| ||||||| || ||||||||||||||||||||    
T  7700477 gaaaaagataggtaa-acaccctttttcatacacctcttatatacaccttcatgtgttatgggtattttagtaattttatatcatatcatcatccttttt 7700575  T
Q  366 catctc 371  Q
     |||||    
T  7700576 tatctc 7700581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 266 - 371
Target Start/End: Complemental strand, 34828255 - 34828152
Alignment:
Q  266 gaaaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatccttttt 365  Q
    ||||||||||||| ||||| | ||||||||||||  |||||| |||||| ||| | |||||||||||| ||||||| |||||||||||||||||  ||||    
T  34828255 gaaaaagataggt-agacatcctttttcatacaccacttatgcacaccc-catatgttaggggtattttagtaattttacatcatatcatcatcactttt 34828158  T
Q  366 catctc 371  Q
    ||||||    
T  34828157 catctc 34828152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 266 - 371
Target Start/End: Original strand, 5811164 - 5811267
Alignment:
Q  266 gaaaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatccttttt 365  Q
    ||||||||||||| ||||||| ||||| |||||| ||  ||||||||| |||||| |||||||||||| |||||||  |||||| ||| ||| || ||||    
T  5811164 gaaaaagataggt-agacacccttttttatacacctcccatgtacacc-tcatgtgttaggggtattttagtaatttcacatcacatcctcacccctttt 5811261  T
Q  366 catctc 371  Q
    ||||||    
T  5811262 catctc 5811267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 266 - 371
Target Start/End: Complemental strand, 31148480 - 31148377
Alignment:
Q  266 gaaaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatccttttt 365  Q
    ||||||||||||| ||||||  |||||||||||| ||||||  |||||| ||| | |||||  ||||| ||||||| ||||||||||||||| || ||||    
T  31148480 gaaaaagataggt-agacactctttttcatacacctcttatacacaccc-catatgttaggcttattttagtaattttacatcatatcatcacccatttt 31148383  T
Q  366 catctc 371  Q
    ||||||    
T  31148382 catctc 31148377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 267 - 371
Target Start/End: Original strand, 21807324 - 21807426
Alignment:
Q  267 aaaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatcctttttc 366  Q
    ||||||||||||  |||| | ||||| |||||||||| || ||||||| || || |||||||||||| |||||||  |||| | |||||||||| |||||    
T  21807324 aaaaagataggtt-gacaaccttttttatacacttctcatatacaccc-cacgtgttaggggtattttagtaatttcacataacatcatcatccattttc 21807421  T
Q  367 atctc 371  Q
    |||||    
T  21807422 atctc 21807426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 266 - 357
Target Start/End: Original strand, 42220964 - 42221053
Alignment:
Q  266 gaaaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggta-tttgagtaattatacatcatatcatca 357  Q
    ||||||||||||| ||||||||||| ||||||||  ||||||||||| | ||||| ||||||||| ||| |||||||  ||||||||||||||    
T  42220964 gaaaaagataggt-agacacctttt-tcatacaccacttatgtacactc-catgtgttaggggtatttttagtaatttaacatcatatcatca 42221053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 266 - 341
Target Start/End: Complemental strand, 13108337 - 13108264
Alignment:
Q  266 gaaaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaatt 341  Q
    ||||||||||||| ||||||| ||||| |||||| | | ||||||||| |||||| |||||||||||| |||||||    
T  13108337 gaaaaagataggt-agacacccttttttatacacctttcatgtacacc-tcatgtgttaggggtattttagtaatt 13108264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 266 - 371
Target Start/End: Complemental strand, 6909 - 6805
Alignment:
Q  266 gaaaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatccttttt 365  Q
    ||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| ||||||||||||||| |||||||    
T  6909 gaaaaagataggt-agataccttttttcatacacttcttatgtacaccctcatgtattagggatatttaagtaattttacatcatatcatcacccttttt 6811  T
Q  366 catctc 371  Q
    ||||||    
T  6810 catctc 6805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 74; Significance: 7e-34; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 266 - 371
Target Start/End: Complemental strand, 42162789 - 42162685
Alignment:
Q  266 gaaaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatccttttt 365  Q
    ||||||||||||| ||||||  |||||||||||||| |||||||||||| |||||||||||||||||||||||||| ||||||||||||||| |||||||    
T  42162789 gaaaaagataggt-agacactctttttcatacactttttatgtacacccccatgtattaggggtatttgagtaattttacatcatatcatcacccttttt 42162691  T
Q  366 catctc 371  Q
    ||||||    
T  42162690 catctc 42162685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 280 - 371
Target Start/End: Complemental strand, 44081958 - 44081867
Alignment:
Q  280 agacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatcctttttcatctc 371  Q
    ||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||| |||||||||||||    
T  44081958 agacaccctttttcatacacttcttatgtacacccccatgtattaggggtatttgagtaattttacattatatcatcaccctttttcatctc 44081867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 266 - 371
Target Start/End: Complemental strand, 31318996 - 31318892
Alignment:
Q  266 gaaaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatccttttt 365  Q
    ||||||||||||| ||||| | ||||||||||||||||||| ||||||| ||||||||||| |||||||||||||| ||||||||||||||| |||||||    
T  31318996 gaaaaagataggt-agacatcatttttcatacacttcttatatacacccccatgtattaggagtatttgagtaattttacatcatatcatcacccttttt 31318898  T
Q  366 catctc 371  Q
    ||||||    
T  31318897 catctc 31318892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 266 - 371
Target Start/End: Complemental strand, 10203855 - 10203751
Alignment:
Q  266 gaaaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatccttttt 365  Q
    ||||||||||||| ||||||| |||||||||||  ||||||||||||||||||||||||||| ||||| ||||||| || ||||||||| || |||||||    
T  10203855 gaaaaagataggt-agacaccctttttcatacatctcttatgtacaccctcatgtattagggatattttagtaattttatatcatatcaccacccttttt 10203757  T
Q  366 catctc 371  Q
    ||||||    
T  10203756 catctc 10203751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 266 - 370
Target Start/End: Complemental strand, 43186217 - 43186115
Alignment:
Q  266 gaaaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatccttttt 365  Q
    ||||||||||||| ||||| | |||||||||||||||||||||||||||| |||||||||||| |||||||||||| || |||||||||||| | |||||    
T  43186217 gaaaaagataggt-agacatcatttttcatacacttcttatgtacaccct-atgtattaggggcatttgagtaattttatatcatatcatcacctttttt 43186120  T
Q  366 catct 370  Q
    |||||    
T  43186119 catct 43186115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 266 - 365
Target Start/End: Complemental strand, 12665536 - 12665438
Alignment:
Q  266 gaaaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatccttttt 365  Q
    ||||||||||||| ||||| | |||||| ||||| ||||||||| |||||||||| |||||||||||| ||||||| ||||||||||||||| |||||||    
T  12665536 gaaaaagataggt-agacatcctttttcgtacacctcttatgtataccctcatgtgttaggggtattttagtaattttacatcatatcatcacccttttt 12665438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 266 - 371
Target Start/End: Complemental strand, 18184743 - 18184640
Alignment:
Q  266 gaaaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatccttttt 365  Q
    ||||||||||||| ||||| | |||||||||||| | ||||||||||| |||||| |||||||||||| ||||||| || |||||||||||| || ||||    
T  18184743 gaaaaagataggt-agacatcctttttcatacaccttttatgtacacc-tcatgtgttaggggtattttagtaattttatatcatatcatcacccctttt 18184646  T
Q  366 catctc 371  Q
    ||||||    
T  18184645 catctc 18184640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 280 - 371
Target Start/End: Complemental strand, 30432516 - 30432426
Alignment:
Q  280 agacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatcctttttcatctc 371  Q
    ||||||| |||||||||||| ||||||||||| || ||| ||||| |||||||| ||||||| ||||||||||||||| || ||||||||||    
T  30432516 agacaccctttttcatacacctcttatgtacatcc-catatattatgggtattttagtaattttacatcatatcatcaccccttttcatctc 30432426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 256 - 371
Target Start/End: Complemental strand, 36189415 - 36189303
Alignment:
Q  256 atttttatacgaaaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcat 355  Q
    |||||| || ||||||||||||| ||||||| ||||||||||||  ||||||||||||  ||| | |||||||||||| | ||||| || ||||||||||    
T  36189415 atttttttaggaaaaagataggt-agacaccctttttcatacaccacttatgtacacc--catatgttaggggtattttaataattttatatcatatcat 36189319  T
Q  356 catcctttttcatctc 371  Q
    ||  | ||||||||||    
T  36189318 cactccttttcatctc 36189303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 266 - 360
Target Start/End: Complemental strand, 33726202 - 33726110
Alignment:
Q  266 gaaaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatcc 360  Q
    ||||||||||||| ||||||| ||||| |||||| ||  ||||||||  |||||| |||||||||||| |||||||  |||||| ||| ||||||    
T  33726202 gaaaaagataggt-agacacccttttttatacacctcccatgtacact-tcatgtgttaggggtattttagtaatttcacatcacatcgtcatcc 33726110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 73; Significance: 3e-33; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 267 - 371
Target Start/End: Original strand, 39249864 - 39249967
Alignment:
Q  267 aaaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatcctttttc 366  Q
    |||||||||||| |||||||||||||||||||| |||||||||||||| |||||||||||||||||| ||||||| ||||| |||||| |||||||||||    
T  39249864 aaaaagataggt-agacaccttttttcatacacctcttatgtacacccccatgtattaggggtattttagtaattttacattatatcaccatcctttttc 39249962  T
Q  367 atctc 371  Q
    |||||    
T  39249963 atctc 39249967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 266 - 371
Target Start/End: Complemental strand, 2509215 - 2509111
Alignment:
Q  266 gaaaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatccttttt 365  Q
    ||||||||||||| |||||| ||||||||||||| ||||||||||||||||||||||||||| ||||| ||||||| |||||||||||| || |||||||    
T  2509215 gaaaaagataggt-agacactttttttcatacacctcttatgtacaccctcatgtattagggatattttagtaattttacatcatatcaccacccttttt 2509117  T
Q  366 catctc 371  Q
    ||||||    
T  2509116 catctc 2509111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 266 - 368
Target Start/End: Original strand, 34307138 - 34307239
Alignment:
Q  266 gaaaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatccttttt 365  Q
    ||||||||||||| |||||||||||||||||||| |||||||||||| | ||||| |||||||||||| ||||||| ||||||||||||||| |||||||    
T  34307138 gaaaaagataggt-agacaccttttttcatacacctcttatgtacactcccatgtgttaggggtattttagtaattttacatcatatcatcacccttttt 34307236  T
Q  366 cat 368  Q
    |||    
T  34307237 cat 34307239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 266 - 371
Target Start/End: Original strand, 46901735 - 46901839
Alignment:
Q  266 gaaaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatccttttt 365  Q
    ||||||||||||| ||||| | ||||||||||| ||||||||||||||  ||||||| ||| |||||||||||||| ||||||||||||||| |||||||    
T  46901735 gaaaaagataggt-agacatcctttttcatacatttcttatgtacaccgccatgtatcaggagtatttgagtaattttacatcatatcatcacccttttt 46901833  T
Q  366 catctc 371  Q
    ||||||    
T  46901834 catctc 46901839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 62; Significance: 1e-26; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 266 - 371
Target Start/End: Complemental strand, 33732759 - 33732656
Alignment:
Q  266 gaaaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatccttttt 365  Q
    ||||||||||||| ||||||| |||||||||||| |||||||||||||| ||| |||||||||||||| ||||||| |||||||||||| || |||||||    
T  33732759 gaaaaagataggt-agacaccctttttcatacacctcttatgtacaccc-catatattaggggtattttagtaattttacatcatatcaccacccttttt 33732662  T
Q  366 catctc 371  Q
    ||||||    
T  33732661 catctc 33732656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 266 - 371
Target Start/End: Complemental strand, 44958304 - 44958200
Alignment:
Q  266 gaaaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatccttttt 365  Q
    ||||||||||||| ||||| | |||||||||||| ||||||||| |||||||||| |||||||||||| ||||||| ||||||||||||||| |||||||    
T  44958304 gaaaaagataggt-agacatcctttttcatacacctcttatgtataccctcatgtgttaggggtattttagtaattttacatcatatcatcacccttttt 44958206  T
Q  366 catctc 371  Q
     |||||    
T  44958205 tatctc 44958200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 266 - 371
Target Start/End: Complemental strand, 16090011 - 16089909
Alignment:
Q  266 gaaaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatccttttt 365  Q
    ||||||||||||| |||||||||||||||||||| |||||||||||||| ||||| |||||||||||| ||||||| |||||||||||| || |||||||    
T  16090011 gaaaaagataggt-agacaccttttttcatacacctcttatgtacaccc-catgtgttaggggtattttagtaattttacatcatatcacca-ccttttt 16089915  T
Q  366 catctc 371  Q
     |||||    
T  16089914 tatctc 16089909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 266 - 371
Target Start/End: Original strand, 37498863 - 37498969
Alignment:
Q  266 gaaaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatc--cttt 363  Q
    ||||||||||||| ||||||| ||||| |||||| ||||||||||| || ||||| |||||||||||| ||||||| ||||||||||||||| |  ||||    
T  37498863 gaaaaagataggt-agacacccttttttatacacctcttatgtacatccccatgtgttaggggtattttagtaattttacatcatatcatcaccctcttt 37498961  T
Q  364 ttcatctc 371  Q
    ||||||||    
T  37498962 ttcatctc 37498969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 288 - 371
Target Start/End: Complemental strand, 14573165 - 14573082
Alignment:
Q  288 tttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatcctttttcatctc 371  Q
    |||| ||||||| |||||||||||||| ||||| |||||||||||| ||||||| ||||||||||||||| |||||| ||||||    
T  14573165 ttttacatacacctcttatgtacacccccatgtgttaggggtattttagtaattttacatcatatcatcacccttttccatctc 14573082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 268 - 371
Target Start/End: Original strand, 3830900 - 3831001
Alignment:
Q  268 aaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatcctttttca 367  Q
    ||||||||||| ||||||| |||||||||||| |||||||||||||| ||||| |||||||||| | ||||||| ||||||| || |||| |  ||||||    
T  3830900 aaaagataggt-agacaccctttttcatacacctcttatgtacaccc-catgtgttaggggtatattagtaattttacatcagataatcaccacttttca 3830997  T
Q  368 tctc 371  Q
    ||||    
T  3830998 tctc 3831001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 333
Target Start/End: Complemental strand, 36315757 - 36315686
Alignment:
Q  261 tatacgaaaaagataggtcagaca-ccttttttcatacacttcttatgtacaccctcatgtattaggggtattt 333  Q
    |||| ||||||||||||| ||||| |||||||| |||||| ||||||||||| |||||||| | ||||||||||    
T  36315757 tataggaaaaagataggt-agacatccttttttgatacacctcttatgtaca-cctcatgtgtcaggggtattt 36315686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 58; Significance: 3e-24; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 261 - 370
Target Start/End: Original strand, 15345655 - 15345762
Alignment:
Q  261 tatacgaaaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatcc 360  Q
    |||| |||||| |||||| ||||| |||||||||||||||||||||||||||||| |||||||||||| ||||||||||||  | |||||||||||| |     
T  15345655 tataggaaaaaaataggt-agacatcttttttcatacacttcttatgtacaccct-atgtattaggggcatttgagtaatttgatatcatatcatcacct 15345752  T
Q  361 tttttcatct 370  Q
    ||||||||||    
T  15345753 tttttcatct 15345762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 266 - 371
Target Start/End: Original strand, 3986906 - 3987009
Alignment:
Q  266 gaaaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatccttttt 365  Q
    ||||||||||||| ||||| | ||||||||||| || ||||||| |||| ||||||||| |||||||||||||||| |||||||||| ||||||| ||||    
T  3986906 gaaaaagataggt-agacatcatttttcatacatttattatgtataccc-catgtattaagggtatttgagtaattttacatcatattatcatccctttt 3987003  T
Q  366 catctc 371  Q
    ||||||    
T  3987004 catctc 3987009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 266 - 370
Target Start/End: Original strand, 3118047 - 3118150
Alignment:
Q  266 gaaaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatccttttt 365  Q
    ||||||||||||| ||||| | |||||||||||  |||||||||||| | |||||||||||||||||| ||||||| |||||||| ||| || |||||||    
T  3118047 gaaaaagataggt-agacatcctttttcatacatctcttatgtacactcccatgtattaggggtattttagtaattttacatcatgtcaccacccttttt 3118145  T
Q  366 catct 370  Q
     ||||    
T  3118146 tatct 3118150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 266 - 371
Target Start/End: Complemental strand, 13697758 - 13697655
Alignment:
Q  266 gaaaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatccttttt 365  Q
    ||||||||||||| ||| | | ||||||||||| | ||||||||||||| ||||| |||| | ||||| ||||||| || |||||||||||| || ||||    
T  13697758 gaaaaagataggt-agagatcatttttcatacattacttatgtacaccc-catgtgttagagatattttagtaattttatatcatatcatcacccgtttt 13697661  T
Q  366 catctc 371  Q
    ||||||    
T  13697660 catctc 13697655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 266 - 371
Target Start/End: Complemental strand, 24208634 - 24208531
Alignment:
Q  266 gaaaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatccttttt 365  Q
    ||||||||||||| ||||| | ||||| |||||| ||| || |||||| |||||| |||||||||||| |||||||  |||||| ||| ||| |||||||    
T  24208634 gaaaaagataggt-agacatccttttttatacacctctcatttacacc-tcatgtgttaggggtattttagtaatttcacatcacatcctcacccttttt 24208537  T
Q  366 catctc 371  Q
    ||||||    
T  24208536 catctc 24208531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 266 - 371
Target Start/End: Complemental strand, 14023124 - 14023021
Alignment:
Q  266 gaaaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatccttttt 365  Q
    ||||||||||||| ||||||| ||||| |||||| ||  ||||||||| |||||| |||||||||||| |||||||  |||||| ||| ||| || || |    
T  14023124 gaaaaagataggt-agacacccttttttatacacctcccatgtacacc-tcatgtgttaggggtattttagtaatttcacatcacatcgtcaccccttgt 14023027  T
Q  366 catctc 371  Q
    ||||||    
T  14023026 catctc 14023021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 266 - 341
Target Start/End: Original strand, 87163 - 87236
Alignment:
Q  266 gaaaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaatt 341  Q
    ||||||||||||| |||||||||||||||||||| | |||||||||||| ||||| |||||||||||| |||||||    
T  87163 gaaaaagataggt-agacaccttttttcatacaccttttatgtacaccc-catgtgttaggggtattttagtaatt 87236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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