View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21163_low_39 (Length: 353)
Name: NF21163_low_39
Description: NF21163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21163_low_39 |
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Alignment Details
Target: chr1 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 11 - 335
Target Start/End: Complemental strand, 36530320 - 36529996
Alignment:
| Q |
11 |
cacagacacagtggtatagacatgattcattcacacacgagaaaatgccgcaacataacaatcaaattagttctagggtggaaaaatggatggatttgga |
110 |
Q |
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| T |
36530320 |
cacaaacacagtggtatagacatgattcattcacacacgagaaaatgccgcaacataacaatcaaattagttctagggtggaaaaatggatggatttgga |
36530221 |
T |
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| Q |
111 |
ttgaatnnnnnnncctagatttatatcgagaaaaactcagttttggtttataccttttggattaaccctaaaacagcataaaataaagaaataaatacag |
210 |
Q |
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| T |
36530220 |
ttgaataaaaaaacctagatttatatcgagaaaaactcagttttggtttataccttttggattaaccctaaaacagcataaaataaagaaataaatacag |
36530121 |
T |
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| Q |
211 |
agattnnnnnnnnnnttgtgattgggaggtataaagcaacgaagaagacgaagatgaagaaaagagaacttacttgcgagtgcgaagtggaagatcgaaa |
310 |
Q |
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| T |
36530120 |
agattaaaaaaaaaattgtgattgggaggtataaagcaacgaagaagacgaagacgaagagaagagaacttacttgcaagtgcgaagtggaagatcaaaa |
36530021 |
T |
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| Q |
311 |
tagaactcagttagcacgaacggag |
335 |
Q |
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| T |
36530020 |
tcgaactcagttagcacgaacggag |
36529996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 27 - 108
Target Start/End: Complemental strand, 36530616 - 36530535
Alignment:
| Q |
27 |
tagacatgattcattcacacacgagaaaatgccgcaacataacaatcaaattagttctagggtggaaaaatggatggatttg |
108 |
Q |
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|||||||||||||||||||||| |||||||||||||||| ||||| |||||||||||| ||||| |||||||||| ||||| |
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| T |
36530616 |
tagacatgattcattcacacacaagaaaatgccgcaacacaacaaataaattagttctaaggtggcaaaatggatgaatttg |
36530535 |
T |
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