View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21163_low_4 (Length: 633)
Name: NF21163_low_4
Description: NF21163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21163_low_4 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 545; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 545; E-Value: 0
Query Start/End: Original strand, 69 - 633
Target Start/End: Original strand, 48286251 - 48286815
Alignment:
| Q |
69 |
acacaaaatcacaatgcagcaaccatcgcccgaacaaaaaccaataatactaccaaaaccaccttgttatagagacccaaacatccaacaaaaaccgctt |
168 |
Q |
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| T |
48286251 |
acacaaaatcacaatgcagcaaccatcgcccgaacaaaaaccaataatactaccaaaaccaccttgttatagagacccaaacatccaacaaaaaccgctt |
48286350 |
T |
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| Q |
169 |
ccaacacgaaacccttctctcccaccttctttccgaccaaaacccaagaaacgtaattattgtcgcctatgttgttgcacattttgcatcatcttcctca |
268 |
Q |
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| T |
48286351 |
ccaacacgaaacccttctctcccaccttctttccgaccaaaacccaagaaacgtaattattgtcgcctattttgttgcacattttgcatcatcttcctca |
48286450 |
T |
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| Q |
269 |
ttctcttcttccttttcatcctcgccgccgcagttatctacattctctatcaaccttccataccagaattccacctcggttccttccgtgttccaagttt |
368 |
Q |
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| T |
48286451 |
ttctcttcttccttttcatcctcgccgccgcagttatctacattctctaccaaccttccataccagaattccacctcggttctttccgtgttccaagttt |
48286550 |
T |
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| Q |
369 |
caacataaccacaaaatccgacggtgcttatctcgacgcaaacacggtaacaatggtggaagtgaagaaccgtaatgcaaaaatggtgtggcgttttgaa |
468 |
Q |
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| T |
48286551 |
caacataaccacaaaatccgacggtgcttatctcgacgcaaacacgataacaatggtggaagtgaagaaccgtaatgcaaaaatggtgtggcgttttgaa |
48286650 |
T |
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| Q |
469 |
caaagtagtgttcagatatgggcagataatggtgatttgaatttaggatcgacgaaggtggctgcgtttgatgtgaaggtgaagaataagacggcggtga |
568 |
Q |
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| T |
48286651 |
caaagtagtgttcagatatgggcagataatggtgatttgaatttaggatcgacgaaggtggctgcgtttgatgtgaaggtgaagaataagacggcggtga |
48286750 |
T |
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| Q |
569 |
aggcggaaacgaaggttagacatgaggagttgaatgagaaacaaaggaggaagttgaaaagtgct |
633 |
Q |
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| T |
48286751 |
agggggaaacgaaggttagacatgaggagttgaatgagaaacaaaggaggaagttgaaaagtgct |
48286815 |
T |
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