View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21163_low_40 (Length: 346)
Name: NF21163_low_40
Description: NF21163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21163_low_40 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 316; Significance: 1e-178; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 9 - 328
Target Start/End: Original strand, 18664623 - 18664942
Alignment:
| Q |
9 |
caagaatatgaaacttttctaacacttgcaaaacatcaattgcttccttcacttcaccctccatgcaagaactatcaagttcctcaatcaatttgcgctc |
108 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18664623 |
caagaatatgaaacttttctaacacttgcaaaacatcaattgcttccttcacttcaccctccatgcaagaactatcaagttcctcaatcaatttgcgctc |
18664722 |
T |
|
| Q |
109 |
agtcatgttcatgttcctgaacacgttgactgcatcatctacagaaccacattgaaaatacatctctaatattctaatgcatgtgcgaactgtgagaggt |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18664723 |
agtcatgttcatgttcctgaacacgttgactgcatcatctacagaaccacattgaaaatacatctctaatattctaatgcatgtgcgaactgtgagaggt |
18664822 |
T |
|
| Q |
209 |
gacagatgttgtaaaacatatatgtgtacaacttttgcctcttcaagaaactcagcctttccacacagttgcattaatcgcaaacaaagatacaaatcca |
308 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18664823 |
gacaaatgttgtaaaacatatatgtgtacaacttttgcctcttcaagaaactcagcctttccacacagttgcattaatcgcaaacaaagatacaaatcca |
18664922 |
T |
|
| Q |
309 |
cataagtatgaagcttttct |
328 |
Q |
| |
|
|||||||||||||||||||| |
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|
| T |
18664923 |
cataagtatgaagcttttct |
18664942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 117 - 328
Target Start/End: Original strand, 18664431 - 18664642
Alignment:
| Q |
117 |
tcatgttcctgaacacgttgactgcatcatctacagaaccacattgaaaatacatctctaatattctaatgcatgtgcgaactgtgagaggtgacagatg |
216 |
Q |
| |
|
|||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| | ||||||||| ||| | |||||||||| ||| |
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|
| T |
18664431 |
tcatgttcttgaatacgttgactgcatcatctacagaaccacattgaaaatacatctccaatattccattgcatgtgctgactttaagaggtgacaaatg |
18664530 |
T |
|
| Q |
217 |
ttgtaaaacatatatgtgtacaacttttgcctcttcaagaaactcagcctttccacacagttgcattaatcgcaaacaaagatacaaatccacataagta |
316 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||| ||| | ||| ||||| |||||||||||||||||||| ||| |||||| ||| | || |
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|
| T |
18664531 |
ttgtaaaacatatctgtgtacaacttttgcctcttcaagagacttggtcttcccacattgttgcattaatcgcaaacaacgatccaaatctacaagaata |
18664630 |
T |
|
| Q |
317 |
tgaagcttttct |
328 |
Q |
| |
|
|||| ||||||| |
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|
| T |
18664631 |
tgaaacttttct |
18664642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 15 - 76
Target Start/End: Original strand, 18664929 - 18664990
Alignment:
| Q |
15 |
tatgaaacttttctaacacttgcaaaacatcaattgcttccttcacttcaccctccatgcaa |
76 |
Q |
| |
|
|||||| |||||||||| ||||||||||| ||||||||| |||||||||||||||| ||||| |
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|
| T |
18664929 |
tatgaagcttttctaactcttgcaaaacagcaattgctttcttcacttcaccctccttgcaa |
18664990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 305; Significance: 1e-172; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 305; E-Value: 1e-172
Query Start/End: Original strand, 12 - 328
Target Start/End: Complemental strand, 15079202 - 15078886
Alignment:
| Q |
12 |
gaatatgaaacttttctaacacttgcaaaacatcaattgcttccttcacttcaccctccatgcaagaactatcaagttcctcaatcaatttgcgctcagt |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
15079202 |
gaatatgaaacttttctaacacttgcaaaacatcaattgcttccttcacttcaccctccatgcaagaactatcaagttcctcaatcaatttgcgctcagt |
15079103 |
T |
|
| Q |
112 |
catgttcatgttcctgaacacgttgactgcatcatctacagaaccacattgaaaatacatctctaatattctaatgcatgtgcgaactgtgagaggtgac |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
15079102 |
catgttcatgttcctgaacacgttgactgcatcatctacagaaccacattgaaaatacatctctaatattctaatgcatgtgcggactgtgagaggtgac |
15079003 |
T |
|
| Q |
212 |
agatgttgtaaaacatatatgtgtacaacttttgcctcttcaagaaactcagcctttccacacagttgcattaatcgcaaacaaagatacaaatccacat |
311 |
Q |
| |
|
| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
15079002 |
aaatgttgtaaaacatatctgtgtacaacttttgcctcttcaagaaactcagcctttccacacagttgcattaatcgcaaacaaagatacaaatccacat |
15078903 |
T |
|
| Q |
312 |
aagtatgaagcttttct |
328 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
15078902 |
aagtatgaagcttttct |
15078886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 116 - 328
Target Start/End: Complemental strand, 15079398 - 15079186
Alignment:
| Q |
116 |
ttcatgttcctgaacacgttgactgcatcatctacagaaccacattgaaaatacatctctaatattctaatgcatgtgcgaactgtgagaggtgacagat |
215 |
Q |
| |
|
||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| | ||||||||| ||| | |||||||||| || |
|
|
| T |
15079398 |
ttcatgttcttgaatacgttgactgcatcatctacagaaccacattgaaaatacatctccaatattccattgcatgtgctgactttaagaggtgacaaat |
15079299 |
T |
|
| Q |
216 |
gttgtaaaacatatatgtgtacaacttttgcctcttcaagaaactcagcctttccacacagttgcattaatcgcaaacaaagatacaaatccacataagt |
315 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||| ||| | ||| ||||| |||||||||||| ||||||| ||| |||||| |||| | | |
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|
| T |
15079298 |
gttgtaaaacatatctgtgtacaacttttgcctcttcaagagacttggtcttcccacattgttgcattaatctcaaacaacgatccaaatctacatgaat |
15079199 |
T |
|
| Q |
316 |
atgaagcttttct |
328 |
Q |
| |
|
||||| ||||||| |
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|
| T |
15079198 |
atgaaacttttct |
15079186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 15 - 76
Target Start/End: Complemental strand, 15078899 - 15078838
Alignment:
| Q |
15 |
tatgaaacttttctaacacttgcaaaacatcaattgcttccttcacttcaccctccatgcaa |
76 |
Q |
| |
|
|||||| |||||||||| ||||||||||| ||||||||| |||||||||||||||| ||||| |
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|
| T |
15078899 |
tatgaagcttttctaactcttgcaaaacagcaattgctttcttcacttcaccctccttgcaa |
15078838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 62; Significance: 1e-26; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 126 - 327
Target Start/End: Original strand, 7449451 - 7449652
Alignment:
| Q |
126 |
tgaacacgttgactgcatcatctacagaaccacattgaaaatacatctctaatattctaatgcatgtgcgaactgtgagaggtgacagatgttgtaaaac |
225 |
Q |
| |
|
||||||||| || ||||||||||| ||||||||||| |||||||||||| |||| |||| || ||||| ||| || ||||| || |||||| ||| | |
|
|
| T |
7449451 |
tgaacacgtcgattgcatcatctagagaaccacattcaaaatacatctccaatactctattgtctgtgctaaccgtaagaggatgcaaatgttgcaaagc |
7449550 |
T |
|
| Q |
226 |
atatatgtgtacaacttttgcctcttcaagaaactcagcctttccacacagttgcattaatcgcaaacaaagatacaaatccacataagtatgaagcttt |
325 |
Q |
| |
|
|| | ||||||||||| ||||||| |||||| ||| |||||| ||||| | |||||||| |||||||| | | ||||||||||| | ||||||||||| |
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|
| T |
7449551 |
atgtctgtgtacaactcttgcctcctcaagagacttagccttcccacaaatgcgcattaattgcaaacaacgctgcaaatccacatgaatatgaagcttt |
7449650 |
T |
|
| Q |
326 |
tc |
327 |
Q |
| |
|
|| |
|
|
| T |
7449651 |
tc |
7449652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 126 - 327
Target Start/End: Original strand, 7534989 - 7535190
Alignment:
| Q |
126 |
tgaacacgttgactgcatcatctacagaaccacattgaaaatacatctctaatattctaatgcatgtgcgaactgtgagaggtgacagatgttgtaaaac |
225 |
Q |
| |
|
||||||||| || ||||||||||| ||||||||||| |||||||||||| |||| |||| || ||||| ||| || ||||| || |||||| ||| | |
|
|
| T |
7534989 |
tgaacacgtcgattgcatcatctagagaaccacattcaaaatacatctccaatactctattgtctgtgctaaccgtaagaggatgcaaatgttgcaaagc |
7535088 |
T |
|
| Q |
226 |
atatatgtgtacaacttttgcctcttcaagaaactcagcctttccacacagttgcattaatcgcaaacaaagatacaaatccacataagtatgaagcttt |
325 |
Q |
| |
|
|| | ||||||||||| |||||||||||||| ||| || ||| ||||| | ||||||||| |||||||| | | |||||||| || | ||| ||||||| |
|
|
| T |
7535089 |
atgtctgtgtacaactcttgcctcttcaagagacttagtcttcccacaaacgtgcattaattgcaaacaacgctgcaaatccatatgaatataaagcttt |
7535188 |
T |
|
| Q |
326 |
tc |
327 |
Q |
| |
|
|| |
|
|
| T |
7535189 |
tc |
7535190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 12 - 95
Target Start/End: Original strand, 7449637 - 7449720
Alignment:
| Q |
12 |
gaatatgaaacttttctaacacttgcaaaacatcaattgcttccttcacttcaccctccatgcaagaactatcaagttcctcaa |
95 |
Q |
| |
|
||||||||| |||||| ||| ||||||| |||| |||||||||||||| ||| ||| ||||| ||||||| |||||||||| |
|
|
| T |
7449637 |
gaatatgaagcttttccaacttttgcaaattttcaactgcttccttcactttaccatccctgcaaaaactatctagttcctcaa |
7449720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 127 - 256
Target Start/End: Complemental strand, 27578260 - 27578131
Alignment:
| Q |
127 |
gaacacgttgactgcatcatctacagaaccacattgaaaatacatctctaatattctaatgcatgtgcgaactgtgagaggtgacagatgttgtaaaaca |
226 |
Q |
| |
|
|||||| || ||| ||||| ||||||||||||| | |||||||||||| | ||| || ||||||| | | | |||||||| ||| ||||| ||| || |
|
|
| T |
27578260 |
gaacaccttaactacatcaactacagaaccacaattaaaatacatctcccaaattatattgcatgttctgaatttgagaggtaacacatgtttcaaagca |
27578161 |
T |
|
| Q |
227 |
tatatgtgtacaacttttgcctcttcaaga |
256 |
Q |
| |
|
||| | ||||| |||||| ||||||||||| |
|
|
| T |
27578160 |
tatctatgtacgactttttcctcttcaaga |
27578131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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