View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21163_low_41 (Length: 345)

Name: NF21163_low_41
Description: NF21163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21163_low_41
NF21163_low_41
[»] chr4 (3 HSPs)
chr4 (158-334)||(43288299-43288476)
chr4 (19-106)||(43288470-43288557)
chr4 (123-179)||(44643596-44643652)
[»] chr1 (6 HSPs)
chr1 (123-182)||(12141569-12141628)
chr1 (123-179)||(1953812-1953868)
chr1 (123-167)||(26310463-26310507)
chr1 (122-179)||(4242485-4242542)
chr1 (123-179)||(51465629-51465683)
chr1 (131-179)||(47580540-47580588)
[»] chr8 (5 HSPs)
chr8 (123-179)||(31183840-31183896)
chr8 (123-179)||(39655614-39655670)
chr8 (124-171)||(21347255-21347302)
chr8 (143-172)||(17028506-17028535)
chr8 (143-172)||(17558942-17558971)
[»] chr3 (1 HSPs)
chr3 (123-179)||(11634084-11634140)
[»] chr7 (2 HSPs)
chr7 (46-119)||(31209759-31209829)
chr7 (123-179)||(39426369-39426424)
[»] chr6 (2 HSPs)
chr6 (123-164)||(6591767-6591808)
chr6 (123-169)||(19976203-19976249)
[»] chr2 (1 HSPs)
chr2 (142-179)||(14433535-14433572)
[»] chr5 (2 HSPs)
chr5 (143-179)||(26702954-26702990)
chr5 (143-179)||(26972687-26972723)


Alignment Details
Target: chr4 (Bit Score: 154; Significance: 1e-81; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 158 - 334
Target Start/End: Complemental strand, 43288476 - 43288299
Alignment:
Q  158 cacaaatcaaattagaagaaacatggagattgataatcttctgtcccttgtgtattgctcaaagcaatatatatgttggcttatttagtagaaccagagt 257  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43288476 cacaaatcaaattagaagaaacatgcagattgataatcttctgtcccttgtgtattgctcaaagcaatatatatgttggcttatttagtagaaccagagt 43288377  T
Q  258 tgccactcct-agtgagtttaaagcagttaatttttacgcctttaattttctattggtctttgtacccttttgcctat 334  Q
    |||||||| | |||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||    
T  43288376 tgccactcatcagtgagtttaaagcagttaatttttacgcctttaatttgctattggcctttgtacccttttgcctat 43288299  T

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Target: chr4; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 19 - 106
Target Start/End: Complemental strand, 43288557 - 43288470
Alignment:
Q  19 tccctggttccggttaacacaatctataagcttctctttaacatgctcactttcagtcaatttcttatacatttctccatccacaaat 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43288557 tccctggttccggttaacacaatctataagcttctctttaacatgctcactttcagtcaatttcttatacatttctccatccacaaat 43288470  T

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Target: chr4; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 123 - 179
Target Start/End: Complemental strand, 44643652 - 44643596
Alignment:
Q  123 gaatttggttgctgacacagctccatcaaaatcttcacaaatcaaattagaagaaac 179  Q
    |||||||||||| |||| |||||||||||||||||||||||||||||||||||||||    
T  44643652 gaatttggttgccgacaaagctccatcaaaatcttcacaaatcaaattagaagaaac 44643596  T

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Target: chr1 (Bit Score: 44; Significance: 5e-16; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 123 - 182
Target Start/End: Original strand, 12141569 - 12141628
Alignment:
Q  123 gaatttggttgctgacacagctccatcaaaatcttcacaaatcaaattagaagaaacatg 182  Q
    |||||||||||| |||||| || |||||||||||||||||||||||||| ||||||||||    
T  12141569 gaatttggttgccgacacatcttcatcaaaatcttcacaaatcaaattaaaagaaacatg 12141628  T

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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 123 - 179
Target Start/End: Complemental strand, 1953868 - 1953812
Alignment:
Q  123 gaatttggttgctgacacagctccatcaaaatcttcacaaatcaaattagaagaaac 179  Q
    |||||||||||| |||||||| |||||||||||||||||||||||| |||| |||||    
T  1953868 gaatttggttgccgacacagccccatcaaaatcttcacaaatcaaagtagaggaaac 1953812  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 123 - 167
Target Start/End: Complemental strand, 26310507 - 26310463
Alignment:
Q  123 gaatttggttgctgacacagctccatcaaaatcttcacaaatcaa 167  Q
    ||||||||||| ||||||||||||||||||||| |||||||||||    
T  26310507 gaatttggttgttgacacagctccatcaaaatcgtcacaaatcaa 26310463  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 122 - 179
Target Start/End: Original strand, 4242485 - 4242542
Alignment:
Q  122 tgaatttggttgctgacacagctccatcaaaatcttcacaaatcaaattagaagaaac 179  Q
    ||||||||||||  |||||| |||||||||||||||| ||||||||||| || |||||    
T  4242485 tgaatttggttgtcgacacaactccatcaaaatcttcgcaaatcaaattggaggaaac 4242542  T

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Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 123 - 179
Target Start/End: Complemental strand, 51465683 - 51465629
Alignment:
Q  123 gaatttggttgctgacacagctccatcaaaatcttcacaaatcaaattagaagaaac 179  Q
    |||||||||||| ||||||||||||||  ||||||||||||||||| |||| |||||    
T  51465683 gaatttggttgccgacacagctccatc--aatcttcacaaatcaaagtagaggaaac 51465629  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 131 - 179
Target Start/End: Complemental strand, 47580588 - 47580540
Alignment:
Q  131 ttgctgacacagctccatcaaaatcttcacaaatcaaattagaagaaac 179  Q
    |||| |||||||||||||| ||||||| |||||||||| |||| |||||    
T  47580588 ttgccgacacagctccatcgaaatcttaacaaatcaaagtagaggaaac 47580540  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 123 - 179
Target Start/End: Complemental strand, 31183896 - 31183840
Alignment:
Q  123 gaatttggttgctgacacagctccatcaaaatcttcacaaatcaaattagaagaaac 179  Q
    |||||||||||  |||||||||||||||||||||||| ||||||| |||||||||||    
T  31183896 gaatttggttgtagacacagctccatcaaaatcttcataaatcaacttagaagaaac 31183840  T

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Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 123 - 179
Target Start/End: Original strand, 39655614 - 39655670
Alignment:
Q  123 gaatttggttgctgacacagctccatcaaaatcttcacaaatcaaattagaagaaac 179  Q
    ||||||| |||| ||||||||||||||||||||||||||||||||||| || |||||    
T  39655614 gaatttgattgccgacacagctccatcaaaatcttcacaaatcaaattggaggaaac 39655670  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 124 - 171
Target Start/End: Complemental strand, 21347302 - 21347255
Alignment:
Q  124 aatttggttgctgacacagctccatcaaaatcttcacaaatcaaatta 171  Q
    ||||||||||  |||||||||| |||||||||||||||||||||||||    
T  21347302 aatttggttgtcgacacagctctatcaaaatcttcacaaatcaaatta 21347255  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 172
Target Start/End: Complemental strand, 17028535 - 17028506
Alignment:
Q  143 ctccatcaaaatcttcacaaatcaaattag 172  Q
    ||||||||||||||||||||||||||||||    
T  17028535 ctccatcaaaatcttcacaaatcaaattag 17028506  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 172
Target Start/End: Complemental strand, 17558971 - 17558942
Alignment:
Q  143 ctccatcaaaatcttcacaaatcaaattag 172  Q
    ||||||||||||||||||||||||||||||    
T  17558971 ctccatcaaaatcttcacaaatcaaattag 17558942  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 123 - 179
Target Start/End: Original strand, 11634084 - 11634140
Alignment:
Q  123 gaatttggttgctgacacagctccatcaaaatcttcacaaatcaaattagaagaaac 179  Q
    ||||||| |||| ||||||||| |||||||||||||||||||||||||||| |||||    
T  11634084 gaatttgattgcagacacagcttcatcaaaatcttcacaaatcaaattagaggaaac 11634140  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 46 - 119
Target Start/End: Original strand, 31209759 - 31209829
Alignment:
Q  46 aagcttctctttaacatgctcactttcagtcaatttcttatacatttctccatccacaaatatgacatagcagc 119  Q
    |||||||||||| ||||||| | |||||| |||||||||||||||   |||||||||| |||||||||||||||    
T  31209759 aagcttctctttgacatgcttaatttcagccaatttcttatacat---tccatccacagatatgacatagcagc 31209829  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 123 - 179
Target Start/End: Original strand, 39426369 - 39426424
Alignment:
Q  123 gaatttggttgctgacacagctccatcaaaatcttcacaaatcaaattagaagaaac 179  Q
    |||||||||||| |||||| | |||||||||| ||||||||||||| |||| |||||    
T  39426369 gaatttggttgcggacacaac-ccatcaaaattttcacaaatcaaagtagaggaaac 39426424  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 123 - 164
Target Start/End: Original strand, 6591767 - 6591808
Alignment:
Q  123 gaatttggttgctgacacagctccatcaaaatcttcacaaat 164  Q
    |||||||||||| |||||||||||||||||||||||||||||    
T  6591767 gaatttggttgccgacacagctccatcaaaatcttcacaaat 6591808  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 123 - 169
Target Start/End: Complemental strand, 19976249 - 19976203
Alignment:
Q  123 gaatttggttgctgacacagctccatcaaaatcttcacaaatcaaat 169  Q
    |||||| ||||| |||| | |||||||||||||||||||||||||||    
T  19976249 gaattttgttgccgacaaaactccatcaaaatcttcacaaatcaaat 19976203  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 142 - 179
Target Start/End: Original strand, 14433535 - 14433572
Alignment:
Q  142 gctccatcaaaatcttcacaaatcaaattagaagaaac 179  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  14433535 gctccatcaaaatcttcacaaattaaattagaagaaac 14433572  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 143 - 179
Target Start/End: Original strand, 26702954 - 26702990
Alignment:
Q  143 ctccatcaaaatcttcacaaatcaaattagaagaaac 179  Q
    ||||||||||| ||||||||||||||||||| |||||    
T  26702954 ctccatcaaaaccttcacaaatcaaattagaggaaac 26702990  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 143 - 179
Target Start/End: Original strand, 26972687 - 26972723
Alignment:
Q  143 ctccatcaaaatcttcacaaatcaaattagaagaaac 179  Q
    ||||||||||| ||||||||||||||||||| |||||    
T  26972687 ctccatcaaaaccttcacaaatcaaattagaggaaac 26972723  T

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