View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21163_low_42 (Length: 344)
Name: NF21163_low_42
Description: NF21163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21163_low_42 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 16 - 344
Target Start/End: Complemental strand, 39221261 - 39220933
Alignment:
| Q |
16 |
atgaatgacaagtcagaccaattggtagaggaaggcgaaaatgtaaacgaactcgcataatcagaacttgaaggtgaaagtgttggcgacttggaattga |
115 |
Q |
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| T |
39221261 |
atgaatgacaagtcagaccaattggtagaggaaggcgaaaatgtaaacgaactcgcataatcagaacttgaaggtgaaagtgttggcgacttggaattga |
39221162 |
T |
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| Q |
116 |
atcttgggctgctgcttggaaaacaacaaggaaaagaagtgccacaaggagatagtggcatcaaagaagcaacaccagaatcagattctgacaagtccat |
215 |
Q |
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| T |
39221161 |
atcttgggctgctgcttggaaaacaacaaggaaaagaagtgccacaaggagatagtggcatcaaagaagcaacaccagaatcagattcagacaagtccat |
39221062 |
T |
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| Q |
216 |
ggcttcatcagtatcttttgctttgcttaagctgttcggataacattcaaaagaatctggagaaccacagtcccttcgatgacttgatgacggcgacgct |
315 |
Q |
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| T |
39221061 |
ggcttcatcagtatcttttgccttgcttaagctgttcggataacattcaaaagaatctggagaaccacagtcacttggatgacttgatgacggcgacgct |
39220962 |
T |
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| Q |
316 |
gacaagggatcatcatcagctgcaaaatc |
344 |
Q |
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| T |
39220961 |
gacaagggatcatcatcagctgcaaaatc |
39220933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 16 - 111
Target Start/End: Complemental strand, 37348513 - 37348418
Alignment:
| Q |
16 |
atgaatgacaagtcagaccaattggtagaggaaggcgaaaatgtaaacgaactcgcataatcagaacttgaaggtgaaagtgttggcgacttggaa |
111 |
Q |
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||||||||||| ||||||||||| ||||| | ||||||||||||||| ||||| || |||||||| | ||||| |||||||| ||||||||||| |
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| T |
37348513 |
atgaatgacaaatcagaccaatttgtagatgcaggcgaaaatgtaaaggaactatcacaatcagaattggaaggagaaagtgtcagcgacttggaa |
37348418 |
T |
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