View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21163_low_44 (Length: 324)
Name: NF21163_low_44
Description: NF21163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21163_low_44 |
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Alignment Details
Target: chr8 (Bit Score: 236; Significance: 1e-130; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 307
Target Start/End: Complemental strand, 475880 - 475561
Alignment:
| Q |
1 |
caactgttattctcttcagctatatcatggaaagcnnnnnnnnnnnngatacagtgatgatgacattaattttaatta-------------tggaatgac |
87 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| |
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| T |
475880 |
caactgttattctcttcagctatatcatggaaagcaaacataaaaaagatacagtgatgatgacattaattttaattaagctaaaaaattatggaatgac |
475781 |
T |
|
| Q |
88 |
attcattgattcctttttcaatcaacgttgtaatgtagattcatctgctaaaagagtttctttcaaatcggttatcaaaattttcacttcctctgtctga |
187 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
475780 |
attcattgattcctttttcaatcaacgttgtaatgtagattcatctgctaaaagagtttctttcaaatcggttatcaaaattttcacttcctctgtctga |
475681 |
T |
|
| Q |
188 |
gtaaccatagattttggatctatcttctgtttgacatggactacatcttccgctttaccccaaagcacgacatacaagccaatgatcactccaattgcgc |
287 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
475680 |
gtaaccatagattttggatctatcttctgtttgacatggactacatcttccgctttaccccaaagcacgacatacaagccaatgatcactccaattgcgc |
475581 |
T |
|
| Q |
288 |
ctatcatgctaactcacatg |
307 |
Q |
| |
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|||||| ||||||||||||| |
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| T |
475580 |
ctatcaagctaactcacatg |
475561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 166 - 291
Target Start/End: Complemental strand, 449745 - 449620
Alignment:
| Q |
166 |
aattttcacttcctctgtctgagtaaccatagattttggatctatcttctgtttgacatggactacatcttccgctttaccccaaagcacgacatacaag |
265 |
Q |
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|||||||||||||||||||| | ||||||||||||||||| ||||||||| ||| |||| ||||| ||||| |||||||||||||| || | ||||||| |
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| T |
449745 |
aattttcacttcctctgtctcattaaccatagattttggaactatcttctctttaacatcaactacttcttcagctttaccccaaagtacaatatacaag |
449646 |
T |
|
| Q |
266 |
ccaatgatcactccaattgcgcctat |
291 |
Q |
| |
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|||||||||||||||||||||||||| |
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| T |
449645 |
ccaatgatcactccaattgcgcctat |
449620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 192 - 307
Target Start/End: Complemental strand, 469129 - 469014
Alignment:
| Q |
192 |
ccatagattttggatctatcttctgtttgacatggactacatcttccgctttaccccaaagcacgacatacaagccaatgatcactccaattgcgcctat |
291 |
Q |
| |
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|||||||||||||| |||| |||| ||| | || ||||| ||||| |||||||||||||| || | |||||| |||||||||||||||||||| ||||| |
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| T |
469129 |
ccatagattttggaactatattctctttaatatcaactacttcttcagctttaccccaaagtacaatatacaaaccaatgatcactccaattgcacctat |
469030 |
T |
|
| Q |
292 |
catgctaactcacatg |
307 |
Q |
| |
|
|| |||||| |||||| |
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| T |
469029 |
caagctaacacacatg |
469014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 230 - 291
Target Start/End: Complemental strand, 457977 - 457916
Alignment:
| Q |
230 |
acatcttccgctttaccccaaagcacgacatacaagccaatgatcactccaattgcgcctat |
291 |
Q |
| |
|
|||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
457977 |
acatcttcagctttaccccaaagcacagtatacaagccaatgatcactccaattgcgcctat |
457916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 200 - 300
Target Start/End: Complemental strand, 481303 - 481203
Alignment:
| Q |
200 |
tttggatctatcttctgtttgacatggactacatcttccgctttaccccaaagcacgacatacaagccaatgatcactccaattgcgcctatcatgctaa |
299 |
Q |
| |
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||||||||| |||||| |||||| | |||||||||| |||||||||||||| || |||||| || ||||||||||||||||| || |||| ||||| |
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| T |
481303 |
tttggatctgtcttctctttgacttcagctacatcttcagctttaccccaaagtacagtatacaaacctatgatcactccaattgcaccaatcaagctaa |
481204 |
T |
|
| Q |
300 |
c |
300 |
Q |
| |
|
| |
|
|
| T |
481203 |
c |
481203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 189 - 298
Target Start/End: Original strand, 27489261 - 27489370
Alignment:
| Q |
189 |
taaccatagattttggatctatcttctgtttgacatggactacatcttccgctttaccccaaagcacgacatacaagccaatgatcactccaattgcgcc |
288 |
Q |
| |
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|||| ||||||||| ||| | ||||| ||| |||| ||||||||||| ||||| |||||||| || | ||||||||||||||||||||||||||| || |
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| T |
27489261 |
taacgatagatttttgatttcccttctctttcacatcaactacatcttcagcttttccccaaagaacaatatacaagccaatgatcactccaattgcacc |
27489360 |
T |
|
| Q |
289 |
tatcatgcta |
298 |
Q |
| |
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||||| |||| |
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|
| T |
27489361 |
tatcaagcta |
27489370 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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