View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21163_low_45 (Length: 324)

Name: NF21163_low_45
Description: NF21163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21163_low_45
NF21163_low_45
[»] chr1 (1 HSPs)
chr1 (11-306)||(40442885-40443180)


Alignment Details
Target: chr1 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 11 - 306
Target Start/End: Complemental strand, 40443180 - 40442885
Alignment:
Q  11 cagagaagcatgagagagatgacaaagaacttctcgcgaaatttggaacagaagagaaatggagaagagagagcaaaacatcgtggctcccacgtctgtt 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| ||    
T  40443180 cagagaagcatgagagagatgacaaagaacttctcgcgaaatttggaacagaagagaaatggagaagagagagcaaaacctcgtggcacccacgtctttt 40443081  T
Q  111 ccagttctgtccaagttgcgaagaaagggagcggatgaaccactgtatttccatatgtgcccttgaagttgatcagaaacaacatttaatggagatggca 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  40443080 ccagttctgtccaagttgcgaagaaagggagcggatgaaccactgtatttccatatgtgcccttgaagttgatcagaaacaacattcaatggagatggca 40442981  T
Q  211 gctcctatggcgagccaacggcacaggctgtggatggcatgatttcagattgattcccaagcttcagagaaatgaatttgttacaatcctaaaacc 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40442980 gctcctatggcgagccaacggcacaggctgtggatggcatgatttcagattgattcccaagcttcagagaaatgaatttgttacaatcctaaaacc 40442885  T

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