View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21163_low_5 (Length: 614)

Name: NF21163_low_5
Description: NF21163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21163_low_5
NF21163_low_5
[»] chr7 (20 HSPs)
chr7 (16-238)||(675218-675440)
chr7 (442-602)||(44207610-44207771)
chr7 (462-598)||(675087-675222)
chr7 (442-596)||(3408166-3408320)
chr7 (442-592)||(16492005-16492155)
chr7 (442-600)||(10980918-10981076)
chr7 (447-585)||(45174484-45174622)
chr7 (442-572)||(39321145-39321277)
chr7 (442-600)||(36856520-36856678)
chr7 (447-603)||(35729402-35729560)
chr7 (443-571)||(5787235-5787363)
chr7 (519-595)||(5240313-5240389)
chr7 (486-597)||(24620778-24620889)
chr7 (442-502)||(34111906-34111966)
chr7 (519-595)||(29034739-29034815)
chr7 (545-591)||(27053478-27053524)
chr7 (545-595)||(30538461-30538511)
chr7 (442-596)||(33901224-33901378)
chr7 (545-595)||(40763327-40763377)
chr7 (232-278)||(45679522-45679568)
[»] chr4 (28 HSPs)
chr4 (442-600)||(16559970-16560130)
chr4 (442-598)||(19934443-19934599)
chr4 (442-572)||(31463297-31463427)
chr4 (442-597)||(54400185-54400338)
chr4 (447-572)||(22665662-22665787)
chr4 (442-601)||(51581431-51581591)
chr4 (442-571)||(27628840-27628969)
chr4 (443-601)||(2804325-2804479)
chr4 (447-599)||(26805657-26805809)
chr4 (443-520)||(49482959-49483036)
chr4 (481-572)||(29533539-29533628)
chr4 (469-571)||(33894076-33894178)
chr4 (450-570)||(54357728-54357848)
chr4 (519-595)||(26040341-26040417)
chr4 (519-595)||(51290482-51290558)
chr4 (450-601)||(3180506-3180657)
chr4 (519-595)||(34016677-34016753)
chr4 (474-571)||(7031615-7031710)
chr4 (545-595)||(27839287-27839337)
chr4 (442-498)||(35498896-35498952)
chr4 (442-553)||(55465485-55465595)
chr4 (228-270)||(23210889-23210931)
chr4 (529-595)||(32131204-32131270)
chr4 (545-595)||(35808377-35808427)
chr4 (545-595)||(54339190-54339240)
chr4 (545-595)||(55669817-55669867)
chr4 (546-595)||(19328728-19328777)
chr4 (519-595)||(2362683-2362759)
[»] chr3 (22 HSPs)
chr3 (448-600)||(46055749-46055901)
chr3 (442-586)||(38611333-38611477)
chr3 (427-556)||(38014657-38014785)
chr3 (454-570)||(36473310-36473426)
chr3 (442-601)||(20499308-20499466)
chr3 (480-601)||(52313438-52313558)
chr3 (453-572)||(32734504-32734623)
chr3 (519-595)||(25102303-25102379)
chr3 (476-574)||(21195281-21195379)
chr3 (545-595)||(48136704-48136754)
chr3 (448-553)||(9189203-9189308)
chr3 (455-502)||(31378543-31378590)
chr3 (524-595)||(31647351-31647422)
chr3 (545-595)||(1803966-1804016)
chr3 (443-548)||(6822827-6822935)
chr3 (545-595)||(41346352-41346402)
chr3 (522-595)||(29915556-29915629)
chr3 (522-595)||(29964709-29964782)
chr3 (519-595)||(8715483-8715558)
chr3 (519-595)||(9067370-9067445)
chr3 (447-499)||(24980126-24980178)
chr3 (448-552)||(33641233-33641337)
[»] chr2 (20 HSPs)
chr2 (442-599)||(9991417-9991574)
chr2 (444-572)||(41464262-41464390)
chr2 (442-598)||(32354707-32354863)
chr2 (442-600)||(6084681-6084840)
chr2 (442-551)||(3095064-3095173)
chr2 (442-544)||(36402439-36402541)
chr2 (454-601)||(40356405-40356551)
chr2 (507-601)||(5711166-5711260)
chr2 (499-572)||(18904248-18904321)
chr2 (519-596)||(39085772-39085849)
chr2 (545-595)||(17095048-17095098)
chr2 (550-601)||(3094867-3094918)
chr2 (545-595)||(765131-765181)
chr2 (447-601)||(2958444-2958598)
chr2 (545-595)||(17056039-17056089)
chr2 (545-595)||(17068486-17068536)
chr2 (545-595)||(17074469-17074519)
chr2 (545-595)||(39401516-39401566)
chr2 (442-575)||(10740397-10740530)
chr2 (519-595)||(862641-862717)
[»] chr1 (28 HSPs)
chr1 (442-602)||(48033876-48034036)
chr1 (442-601)||(4551040-4551199)
chr1 (442-601)||(26060165-26060327)
chr1 (442-595)||(37275239-37275392)
chr1 (442-601)||(3077019-3077177)
chr1 (442-571)||(39873321-39873451)
chr1 (444-572)||(2351224-2351352)
chr1 (459-598)||(12482352-12482490)
chr1 (447-572)||(30111750-30111875)
chr1 (453-596)||(38680884-38681027)
chr1 (442-572)||(15177025-15177155)
chr1 (480-565)||(32512082-32512167)
chr1 (443-571)||(21029295-21029421)
chr1 (459-572)||(4081205-4081318)
chr1 (448-598)||(8903951-8904098)
chr1 (442-518)||(16109867-16109943)
chr1 (545-595)||(27209699-27209749)
chr1 (447-555)||(46065316-46065425)
chr1 (545-595)||(41147456-41147506)
chr1 (519-595)||(22346215-22346291)
chr1 (519-595)||(34874619-34874695)
chr1 (545-595)||(2125685-2125735)
chr1 (545-595)||(5945498-5945548)
chr1 (455-497)||(22416674-22416716)
chr1 (442-600)||(39323379-39323537)
chr1 (522-595)||(11386036-11386109)
chr1 (519-595)||(40845303-40845379)
chr1 (545-601)||(49508706-49508762)
[»] chr5 (16 HSPs)
chr5 (442-601)||(33338215-33338373)
chr5 (427-571)||(28273373-28273513)
chr5 (443-599)||(24397457-24397611)
chr5 (442-601)||(11680185-11680341)
chr5 (483-601)||(41530402-41530520)
chr5 (448-601)||(5108381-5108532)
chr5 (447-598)||(8212993-8213143)
chr5 (508-601)||(19804488-19804581)
chr5 (228-287)||(36522317-36522376)
chr5 (519-591)||(338749-338821)
chr5 (519-595)||(4962498-4962573)
chr5 (519-595)||(15915884-15915960)
chr5 (443-479)||(19804581-19804617)
chr5 (459-577)||(32522698-32522816)
chr5 (519-595)||(16315515-16315591)
chr5 (519-595)||(35653236-35653312)
[»] chr6 (7 HSPs)
chr6 (448-599)||(6614856-6615007)
chr6 (445-601)||(22616846-22617000)
chr6 (447-571)||(31765774-31765898)
chr6 (442-553)||(28541931-28542042)
chr6 (545-595)||(26572063-26572113)
chr6 (519-595)||(10855484-10855560)
chr6 (519-595)||(29692322-29692398)
[»] chr8 (12 HSPs)
chr8 (443-590)||(10635953-10636100)
chr8 (442-572)||(24286471-24286601)
chr8 (443-601)||(36054957-36055115)
chr8 (447-580)||(40451890-40452023)
chr8 (442-596)||(44159316-44159470)
chr8 (447-567)||(31452052-31452171)
chr8 (447-572)||(28280397-28280522)
chr8 (545-595)||(45338082-45338132)
chr8 (510-559)||(3744319-3744368)
chr8 (522-595)||(26672845-26672917)
chr8 (530-595)||(19389291-19389356)
chr8 (519-601)||(7532837-7532919)
[»] scaffold0014 (1 HSPs)
scaffold0014 (442-549)||(73413-73521)


Alignment Details
Target: chr7 (Bit Score: 183; Significance: 1e-98; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 16 - 238
Target Start/End: Complemental strand, 675440 - 675218
Alignment:
Q  16 ccttgaaccactcatgactcaacagtggtgtcataattgatggttgaaccagatccttgtgttgaacttcttcataacaaggtgctttggtgacgtgtcc 115  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| || |||||||||    
T  675440 ccttgaaccactcatgactcaatagtggtgtcataattgatggttgaaccagctccttgtgttgaacatcttcataacaaggtgcttaggggacgtgtcc 675341  T
Q  116 atttagtatcactaatggccgttcaagtagatataaatgaaaaatgcttctctttgagggagaacgtacccatataaagaatggacaaactcacatattc 215  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |||||    
T  675340 atttagtatcactaatggccgttcaaggagatataaatgaaaaatgcttctctttgagggagagcgtactcatataaagaatggacaaactcacgtattc 675241  T
Q  216 aagagagattgttctcacattag 238  Q
    | |||||||||||||||||||||    
T  675240 aggagagattgttctcacattag 675218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 442 - 602
Target Start/End: Original strand, 44207610 - 44207771
Alignment:
Q  442 caatggttaaggtaaccaaaattagtagttttacattgaaaacaacaatttataaactttttactagttgacttgaccactttttatca-ttttccaaca 540  Q
    |||||||||||||||||||||||||||| |||| |||| |||||||||||||||||  |||||| |||||||||||| ||||||||||| ||||||||||    
T  44207610 caatggttaaggtaaccaaaattagtagctttatattggaaacaacaatttataaaaattttacaagttgacttgactactttttatcatttttccaaca 44207709  T
Q  541 caaaatttctatttttattcctttatccaatgtccaaaggacaatggttagcatttcccttc 602  Q
    |||||||||||||||| ||||||||||||||| |  |||| |||||||||||||||||||||    
T  44207710 caaaatttctatttttgttcctttatccaatgccacaagggcaatggttagcatttcccttc 44207771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 462 - 598
Target Start/End: Complemental strand, 675222 - 675087
Alignment:
Q  462 attagtagttttacattgaaaacaacaatttataaactttttactagttgacttgaccactttttatcattttccaacacaaaatttctatttttattcc 561  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| || |    
T  675222 attagtagctttacattgaaaacaacaatttataaactttttactagttgatttgaccactttttattattttccaacacaaaatttctattttt-tttc 675124  T
Q  562 tttatccaatgtccaaaggacaatggttagcatttcc 598  Q
    ||||||||||| ||||||| |||||||||||||||||    
T  675123 tttatccaatgcccaaagggcaatggttagcatttcc 675087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 442 - 596
Target Start/End: Original strand, 3408166 - 3408320
Alignment:
Q  442 caatggttaaggtaaccaaaattagtagttttacattgaaaacaacaatttataaactttttactagttgacttgaccactttttatcattttccaacac 541  Q
    |||||||||||||| ||||||||||||| ||||||||| |||||||||||||| |||||||||| |||||||||||| ||||||||||||||| ||||||    
T  3408166 caatggttaaggtagccaaaattagtagctttacattggaaacaacaatttattaactttttacaagttgacttgactactttttatcatttttcaacac 3408265  T
Q  542 aaaatttctatttttattcctttatccaatgtccaaaggacaatggttagcattt 596  Q
    ||||||||||||||| ||| ||||| |||||||| |||  |||||||||||||||    
T  3408266 aaaatttctatttttgttcttttattcaatgtcccaagagcaatggttagcattt 3408320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 442 - 592
Target Start/End: Complemental strand, 16492155 - 16492005
Alignment:
Q  442 caatggttaaggtaaccaaaattagtagttttacattgaaaacaacaatttataaactttttactagttgacttgaccactttttatcattttccaacac 541  Q
    ||||| ||||||||||| |||||||||  ||||||||| ||||||||||||||||||||||||| |||||||||||| |||||||||||||||| |||||    
T  16492155 caatgattaaggtaaccgaaattagtaactttacattggaaacaacaatttataaactttttacaagttgacttgactactttttatcattttctaacac 16492056  T
Q  542 aaaatttctatttttattcctttatccaatgtccaaaggacaatggttagc 592  Q
    |||||||||| |||| ||||||||||||||| || |||| |||||||||||    
T  16492055 aaaatttctagttttgttcctttatccaatgccctaagggcaatggttagc 16492005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 442 - 600
Target Start/End: Original strand, 10980918 - 10981076
Alignment:
Q  442 caatggttaaggtaaccaaaattagtagttttacattgaaaacaacaatttataaactttttactagttgacttgaccactttttatcattttccaacac 541  Q
    |||||||||||  ||||||||||||||  |||||||||||||||| |||||||||||||||||| |||||||||||  ||||||||||||||||||||||    
T  10980918 caatggttaagacaaccaaaattagtatctttacattgaaaacaataatttataaactttttacaagttgacttgagtactttttatcattttccaacac 10981017  T
Q  542 aaaatttctatttttattcctttatccaatgtccaaaggacaatggttagcatttccct 600  Q
    || ||||  |||||| || |||||||||||| || | |||||||| |||||||||||||    
T  10981018 aacattttcatttttgtttctttatccaatgacccagggacaatgattagcatttccct 10981076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 447 - 585
Target Start/End: Complemental strand, 45174622 - 45174484
Alignment:
Q  447 gttaaggtaaccaaaattagtagttttacattgaaaacaacaatttataaactttttactagttgacttgaccactttttatcattttccaacacaaaat 546  Q
    |||||| |||||||||||| ||||||||||||| ||||||||||||||||||||||||| |||||||||||||| ||||||||||||| |||||||||||    
T  45174622 gttaagataaccaaaattaatagttttacattggaaacaacaatttataaactttttacaagttgacttgaccaatttttatcatttttcaacacaaaat 45174523  T
Q  547 ttctatttttattcctttatccaatgtccaaaggacaat 585  Q
    |||||| || |||||||||| ||||| || |||| ||||    
T  45174522 ttctatcttcattcctttattcaatgccccaagggcaat 45174484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 442 - 572
Target Start/End: Original strand, 39321145 - 39321277
Alignment:
Q  442 caatggttaaggtaaccaaaattagtagttttacattgaaaacaacaatttataaactttttactagttgacttgacca--ctttttatcattttccaac 539  Q
    |||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| |||||| ||||| |   ||||||||||||||||||    
T  39321145 caatggttaaggtaaccaaaattagtagctttacattggaaacaacaatttataaactttttacaagttgatttgactattttttttatcattttccaac 39321244  T
Q  540 acaaaatttctatttttattcctttatccaatg 572  Q
    ||||||||| ||||||| |||||||||||||||    
T  39321245 acaaaatttatatttttgttcctttatccaatg 39321277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 442 - 600
Target Start/End: Original strand, 36856520 - 36856678
Alignment:
Q  442 caatggttaaggtaaccaaaattagtagttttacattgaaaacaacaatttataaactttttactagttgacttgaccactttttatcattttccaacac 541  Q
    ||||| |||||||||||||||||||||  |||| |||| ||||||| |||| |||||||||||| ||||||||||| |||||||||||| |||| || ||    
T  36856520 caatgattaaggtaaccaaaattagtaactttatattggaaacaactatttgtaaactttttacaagttgacttgatcactttttatcactttctaatac 36856619  T
Q  542 aaaatttctatttttattcctttatccaatgtccaaaggacaatggttagcatttccct 600  Q
    | ||||||||||||| ||||||||||||||| || ||||||| |  |||||||||||||    
T  36856620 acaatttctatttttgttcctttatccaatgccctaaggacactctttagcatttccct 36856678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 447 - 603
Target Start/End: Complemental strand, 35729560 - 35729402
Alignment:
Q  447 gttaaggtaaccaaaattagtagttttacattgaaaacaacaatttataaactttttactagttgacttgaccactttttatcattttccaacacaaaat 546  Q
    ||||| ||||||||||||||||||||||||||| |||||| |||||||||| ||||||| ||||||||| |||||||||||||| ||| ||||||| |||    
T  35729560 gttaaagtaaccaaaattagtagttttacattggaaacaataatttataaattttttacaagttgacttaaccactttttatcacttttcaacacacaat 35729461  T
Q  547 ttctat--ttttattcctttatccaatgtccaaaggacaatggttagcatttcccttca 603  Q
    ||||||  |||| ||||||||| |||||||| |||| || |  ||| ||||||||||||    
T  35729460 ttctattttttttttcctttattcaatgtcccaagggcactctttaacatttcccttca 35729402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 443 - 571
Target Start/End: Original strand, 5787235 - 5787363
Alignment:
Q  443 aatggttaaggtaaccaaaattagtagttttacattgaaaacaacaatttataaactttttactagttgacttgaccactttttatcattttccaacaca 542  Q
    ||||||||| ||||||||||||| |||||||||||||||||||| ||||| |||||||||||  || ||||||||||||||||||||| ||||||||| |    
T  5787235 aatggttaatgtaaccaaaattaatagttttacattgaaaacaataatttgtaaactttttataagatgacttgaccactttttatcactttccaacata 5787334  T
Q  543 aaatttctatttttattcctttatccaat 571  Q
    || ||| ||||||| ||||| ||||||||    
T  5787335 aattttttatttttgttcctctatccaat 5787363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 519 - 595
Target Start/End: Complemental strand, 5240389 - 5240313
Alignment:
Q  519 cactttttatcattttccaacacaaaatttctatttttattcctttatccaatgtccaaaggacaatggttagcatt 595  Q
    ||||||| | |||||| ||| || | |||||||||||||| ||||||||||||| |  |||||||||||||||||||    
T  5240389 cacttttcaccatttttcaatactatatttctatttttatccctttatccaatgcctcaaggacaatggttagcatt 5240313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 486 - 597
Target Start/End: Original strand, 24620778 - 24620889
Alignment:
Q  486 acaatttataaactttttactagttgacttgacca-ctttttatcattttccaacacaaaatttctatttttattcctttatccaatgtccaaaggacaa 584  Q
    |||||||||||| ||||||| |||||||||||  |  |||||||||||||| |||| ||||||| ||||||| ||||||||| | ||   | ||||||||    
T  24620778 acaatttataaaatttttacaagttgacttgataatttttttatcattttctaacataaaatttttattttt-ttcctttattcgataatccaaggacaa 24620876  T
Q  585 tggttagcatttc 597  Q
    || ||||||||||    
T  24620877 tgattagcatttc 24620889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 442 - 502
Target Start/End: Complemental strand, 34111966 - 34111906
Alignment:
Q  442 caatggttaaggtaaccaaaattagtagttttacattgaaaacaacaatttataaactttt 502  Q
    |||||||||||| |||||||| |||||||||| |||||||||  ||||||| |||||||||    
T  34111966 caatggttaaggaaaccaaaaatagtagttttgcattgaaaattacaatttttaaactttt 34111906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 519 - 595
Target Start/End: Original strand, 29034739 - 29034815
Alignment:
Q  519 cactttttatcattttccaacacaaaatttctatttttattcctttatccaatgtccaaaggacaatggttagcatt 595  Q
    ||||||| | |||||||||| || | |||| ||||||||| || |||||||||| |  |||||||||||||||||||    
T  29034739 cacttttcaccattttccaatactatatttatatttttatccccttatccaatgcctcaaggacaatggttagcatt 29034815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 545 - 591
Target Start/End: Complemental strand, 27053524 - 27053478
Alignment:
Q  545 atttctatttttattcctttatccaatgtccaaaggacaatggttag 591  Q
    |||||||||||||| ||||||||||||| || |||||||||| ||||    
T  27053524 atttctatttttatccctttatccaatgccctaaggacaatgattag 27053478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 545 - 595
Target Start/End: Complemental strand, 30538511 - 30538461
Alignment:
Q  545 atttctatttttattcctttatccaatgtccaaaggacaatggttagcatt 595  Q
    |||||||||||||| || ||||| ||||||| |||||||||| ||||||||    
T  30538511 atttctatttttatccccttatctaatgtcccaaggacaatgattagcatt 30538461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 442 - 596
Target Start/End: Original strand, 33901224 - 33901378
Alignment:
Q  442 caatggttaaggtaaccaaaattagtagttttacattgaaaacaacaatttataaactttttactagttgacttgaccactttttatcattttccaacac 541  Q
    |||||||||||| ||| |||| || || ||||| |||| |||| |||||||  ||||||||||  |||||| || | ||| ||||| || ||||||| |     
T  33901224 caatggttaaggaaactaaaaataataattttaaattggaaactacaattttcaaactttttaaaagttgagttcatcacattttaccactttccaagat 33901323  T
Q  542 aaaatttctatttttattcctttatccaatgtccaaaggacaatggttagcattt 596  Q
    || ||||||||| || |||  ||| ||||||||| || |||| |  |||||||||    
T  33901324 aatatttctattattgttctattaaccaatgtcctaaagacactctttagcattt 33901378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 545 - 595
Target Start/End: Original strand, 40763327 - 40763377
Alignment:
Q  545 atttctatttttattcctttatccaatgtccaaaggacaatggttagcatt 595  Q
    |||||||||||||| || |||||||||| || |||| ||||||||||||||    
T  40763327 atttctatttttatccccttatccaatgccccaagggcaatggttagcatt 40763377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 232 - 278
Target Start/End: Complemental strand, 45679568 - 45679522
Alignment:
Q  232 acattagatgaaaaaatggatgttgaacagtttataagtgagaggac 278  Q
    ||||| ||||||||||||||||||| | | |||||||||||||||||    
T  45679568 acattggatgaaaaaatggatgttggatactttataagtgagaggac 45679522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 126; Significance: 1e-64; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 442 - 600
Target Start/End: Complemental strand, 16560130 - 16559970
Alignment:
Q  442 caatggttaaggtaaccaaaattagtagttttacattgaaaacaacaatttataaactttttactagttgacttgacca--ctttttatcattttccaac 539  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||   ||||||||||||||||||    
T  16560130 caatggttaaggtaaccaaaattagtagttttacattggaaacaacaatttataaactttttacaagttgacttgaccattttttttatcattttccaac 16560031  T
Q  540 acaaaatttctatttttattcctttatccaatgtccaaaggacaatggttagcatttccct 600  Q
    ||||||||||||||||||||||||||||||||| || |||| |||||||||||||||||||    
T  16560030 acaaaatttctatttttattcctttatccaatgccccaagggcaatggttagcatttccct 16559970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 442 - 598
Target Start/End: Complemental strand, 19934599 - 19934443
Alignment:
Q  442 caatggttaaggtaaccaaaattagtagttttacattgaaaacaacaatttataaactttttactagttgacttgaccactttttatcattttccaacac 541  Q
    ||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||    
T  19934599 caatggttaagataaccaaaattagtagttttacattaaaaacaacaatttataaactttttacaagttgacttgaccattttttatcattttccaatac 19934500  T
Q  542 aaaatttctatttttattcctttatccaatgtccaaaggacaatggttagcatttcc 598  Q
    ||||||| ||||||| ||||||| |||||| ||| || | ||||||||||| |||||    
T  19934499 aaaatttttatttttgttcctttctccaatatcccaaaggcaatggttagcctttcc 19934443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 442 - 572
Target Start/End: Complemental strand, 31463427 - 31463297
Alignment:
Q  442 caatggttaaggtaaccaaaattagtagttttacattgaaaacaacaatttataaactttttactagttgacttgaccactttttatcattttccaacac 541  Q
    |||||||| ||||||||||||||||||||||||| ||| |||||||||||| |||||||||||| ||||||||||||||||||||| || ||||||||||    
T  31463427 caatggttgaggtaaccaaaattagtagttttacgttggaaacaacaatttgtaaactttttacaagttgacttgaccactttttaccactttccaacac 31463328  T
Q  542 aaaatttctatttttattcctttatccaatg 572  Q
    ||||||||||||||| |||||||||||||||    
T  31463327 aaaatttctatttttgttcctttatccaatg 31463297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 442 - 597
Target Start/End: Original strand, 54400185 - 54400338
Alignment:
Q  442 caatggttaaggtaaccaaaattagtagttttacattgaaaacaacaatttataaactttttactagttgacttgaccactttttatcattttccaacac 541  Q
    |||||||||||||||||||||||| ||| ||||||| | ||||||||||| ||||||||||||| ||||||||| |||| ||||||||||||||||||||    
T  54400185 caatggttaaggtaaccaaaattaatagctttacatcggaaacaacaatt-ataaactttttacaagttgacttaacca-tttttatcattttccaacac 54400282  T
Q  542 aaaatttctatttttattcctttatccaatgtccaaaggacaatggttagcatttc 597  Q
    ||||||| ||||||||||||||||||||||| ||  ||| ||||||||||||||||    
T  54400283 aaaatttttatttttattcctttatccaatgccccgagggcaatggttagcatttc 54400338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 447 - 572
Target Start/End: Original strand, 22665662 - 22665787
Alignment:
Q  447 gttaaggtaaccaaaattagtagttttacattgaaaacaacaatttataaactttttactagttgacttgaccactttttatcattttccaacacaaaat 546  Q
    ||||||||||||||| ||| ||||||||||||| |||||||||||| |||||||||||| | |||||||||||||||||||||||||||||||| |||||    
T  22665662 gttaaggtaaccaaatttaatagttttacattggaaacaacaatttgtaaactttttacaatttgacttgaccactttttatcattttccaacagaaaat 22665761  T
Q  547 ttctatttttattcctttatccaatg 572  Q
    |||||||||| |||| ||||||||||    
T  22665762 ttctatttttgttcccttatccaatg 22665787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 442 - 601
Target Start/End: Complemental strand, 51581591 - 51581431
Alignment:
Q  442 caatggttaaggtaaccaaaattagtagttttacattgaaaacaacaatttataaactttttactagttgacttgaccact-ttttatcattttccaaca 540  Q
    |||||||||||||||||||||||||| | |||||||||||||||||||||| ||||  |||||| |||| ||||||||||| |||||||| |||||||||    
T  51581591 caatggttaaggtaaccaaaattagtcgctttacattgaaaacaacaatttgtaaatgttttacaagttaacttgaccacttttttatcactttccaaca 51581492  T
Q  541 caaaatttctatttttattcctttatccaatgtccaaaggacaatggttagcatttccctt 601  Q
    |||||||||||||||| ||||||||||||||| |  |||| || |  ||||||||||||||    
T  51581491 caaaatttctatttttgttcctttatccaatgcctcaagggcactctttagcatttccctt 51581431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 442 - 571
Target Start/End: Original strand, 27628840 - 27628969
Alignment:
Q  442 caatggttaaggtaaccaaaattagtagttttacattgaaaacaacaatttataaactttttactagttgacttgaccactttttatcattttccaacac 541  Q
    ||||||||| |||||||| ||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||     
T  27628840 caatggttatggtaaccagaattagtagctttacattgaaaacaacaatttataaactttttacaagttgacttgaccacttttaatcattttccaacaa 27628939  T
Q  542 aaaatttctatttttattcctttatccaat 571  Q
    ||  ||| ||||||| ||| ||||||||||    
T  27628940 aatttttttatttttgttcttttatccaat 27628969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 443 - 601
Target Start/End: Original strand, 2804325 - 2804479
Alignment:
Q  443 aatggttaaggtaaccaaaattagtagttttacattgaaaacaacaatttataaactttttactagttgacttgaccactttttatcattttccaacaca 542  Q
    ||||||||| |||| ||||||||||||||||| |||  ||| || |||||||||||||||||| |||||||||||| |||||||||||||||||||||||    
T  2804325 aatggttaatgtaagcaaaattagtagttttatatt--aaataataatttataaactttttacaagttgacttgactactttttatcattttccaacaca 2804422  T
Q  543 aaatttctatttttattcctttatccaatgtccaaaggacaatggttagcatttccctt 601  Q
    |||||||||||||| ||||||||| |||  ||| |||| ||||||||| ||||| ||||    
T  2804423 aaatttctatttttgttcctttattcaa--tcccaagggcaatggttatcattttcctt 2804479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 447 - 599
Target Start/End: Complemental strand, 26805809 - 26805657
Alignment:
Q  447 gttaaggtaaccaaaattagtagttttacattgaaaacaacaatttataaactttttactagttgacttgaccactttttatcattttccaacacaaaat 546  Q
    ||||||||||||||||||||||| ||||||||| |||||||||||| |||||||||||| || |||||||||||||||||| || ||| |||||  |  |    
T  26805809 gttaaggtaaccaaaattagtagctttacattggaaacaacaatttttaaactttttacaagctgacttgaccactttttaccacttttcaacatcattt 26805710  T
Q  547 ttctatttttattcctttatccaatgtccaaaggacaatggttagcatttccc 599  Q
    ||||||||||  | | |||||||||| || |||| || |  ||||||||||||    
T  26805709 ttctatttttgcttccttatccaatgccctaagggcactttttagcatttccc 26805657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 443 - 520
Target Start/End: Complemental strand, 49483036 - 49482959
Alignment:
Q  443 aatggttaaggtaaccaaaattagtagttttacattgaaaacaacaatttataaactttttactagttgacttgacca 520  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | |||| |||||||    
T  49483036 aatggttaaggtaaccaaaattagtagctttacattgaaaacaacaatttataaactttttacaaattgatttgacca 49482959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 481 - 572
Target Start/End: Complemental strand, 29533628 - 29533539
Alignment:
Q  481 aaacaacaatttataaactttttactagttgacttgaccactttttatcattttccaacacaaaatttctatttttattcctttatccaatg 572  Q
    ||||||||||| ||||||||||||| |||||||||||| ||||||||||||||||||||| |||||||||| |||||||| |||||||||||    
T  29533628 aaacaacaatt-ataaactttttacaagttgacttgactactttttatcattttccaacaaaaaatttcta-ttttattcttttatccaatg 29533539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 469 - 571
Target Start/End: Original strand, 33894076 - 33894178
Alignment:
Q  469 gttttacattgaaaacaacaatttataaactttttactagttgacttgaccactttttatcattttccaacacaaaatttctatttttattcctttatcc 568  Q
    ||||||||||  ||||||||||||||||||||||||| | ||||||| || ||||||||||| | || |||||||||||| ||||||| |||||||||||    
T  33894076 gttttacattcgaaacaacaatttataaactttttacaaattgactttactactttttatcactatctaacacaaaatttttatttttgttcctttatcc 33894175  T
Q  569 aat 571  Q
    |||    
T  33894176 aat 33894178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 450 - 570
Target Start/End: Complemental strand, 54357848 - 54357728
Alignment:
Q  450 aaggtaaccaaaattagtagttttacattgaaaacaacaatttataaactttttactagttgacttgaccactttttatcattttccaacacaaaatttc 549  Q
    |||||||||||||||| ||  ||||||||||||| |||||||| |||||||||||| |||| | |||||||||||| |||| ||| |||||||  ||||     
T  54357848 aaggtaaccaaaattaataactttacattgaaaagaacaatttgtaaactttttacaagttaatttgaccacttttcatcacttttcaacacattatttt 54357749  T
Q  550 tatttttattcctttatccaa 570  Q
    ||||||| || ||||||||||    
T  54357748 tatttttgtttctttatccaa 54357728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 519 - 595
Target Start/End: Complemental strand, 26040417 - 26040341
Alignment:
Q  519 cactttttatcattttccaacacaaaatttctatttttattcctttatccaatgtccaaaggacaatggttagcatt 595  Q
    ||||||| | |||||||||| || | |||||||||||||| || |||||||||| || |||||||||||||||||||    
T  26040417 cacttttcaccattttccaatactatatttctatttttatccccttatccaatgccccaaggacaatggttagcatt 26040341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 519 - 595
Target Start/End: Original strand, 51290482 - 51290558
Alignment:
Q  519 cactttttatcattttccaacacaaaatttctatttttattcctttatccaatgtccaaaggacaatggttagcatt 595  Q
    ||||||| ||||||||||||  | | ||||||| |||||| || ||||||||||||| |||||||||||||||||||    
T  51290482 cacttttcatcattttccaatgctatatttctaattttatccccttatccaatgtcccaaggacaatggttagcatt 51290558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 450 - 601
Target Start/End: Original strand, 3180506 - 3180657
Alignment:
Q  450 aaggtaaccaaaattagtagttttacattgaaaacaacaatttataaactttttactagttgacttgaccactttttatcattttccaacacaaaatttc 549  Q
    |||| |||||||| |||| ||||| ||||| ||| |||||||| |||| |||| |  |||||| || ||||||||| | |  ||| |||||||| |||||    
T  3180506 aaggaaaccaaaagtagttgttttgcattggaaataacaatttttaaatttttcagaagttgaattcaccacttttcaccccttttcaacacaatatttc 3180605  T
Q  550 tatttttattcctttatccaatgtccaaaggacaatggttagcatttccctt 601  Q
    || ||||||||| ||| |||||| || |||| || |  ||||||||||||||    
T  3180606 taattttattccattaaccaatgccctaagggcactctttagcatttccctt 3180657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 519 - 595
Target Start/End: Original strand, 34016677 - 34016753
Alignment:
Q  519 cactttttatcattttccaacacaaaatttctatttttattcctttatccaatgtccaaaggacaatggttagcatt 595  Q
    ||||||| | ||||||||||  | | |||||||||||||| || ||||||||||||  |||||||||||||||||||    
T  34016677 cacttttcaccattttccaatgctatatttctatttttatccccttatccaatgtctcaaggacaatggttagcatt 34016753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 474 - 571
Target Start/End: Original strand, 7031615 - 7031710
Alignment:
Q  474 acattgaaaacaacaatttataaactttttactagttgacttgaccactttttatcattttccaacacaaaatttctatttttattcctttatccaat 571  Q
    |||||| ||||||||| || |||||||| ||  |||||| || |||||||||||||| ||| ||||| || |||| ||||||| |||| |||||||||    
T  7031615 acattggaaacaacaaattttaaactttata--agttgattttaccactttttatcacttttcaacaaaatatttttatttttgttccgttatccaat 7031710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 545 - 595
Target Start/End: Complemental strand, 27839337 - 27839287
Alignment:
Q  545 atttctatttttattcctttatccaatgtccaaaggacaatggttagcatt 595  Q
    ||||||||||||||||| |||||||||| || |||| ||||||||||||||    
T  27839337 atttctatttttattcccttatccaatgccccaagggcaatggttagcatt 27839287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 442 - 498
Target Start/End: Complemental strand, 35498952 - 35498896
Alignment:
Q  442 caatggttaaggtaaccaaaattagtagttttacattgaaaacaacaatttataaac 498  Q
    |||||||||||| ||| |||| || |||||||||||||||||| ||||||| |||||    
T  35498952 caatggttaaggaaactaaaaataatagttttacattgaaaactacaatttttaaac 35498896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 442 - 553
Target Start/End: Complemental strand, 55465595 - 55465485
Alignment:
Q  442 caatggttaaggtaaccaaaattagtagttttacattgaaaacaacaatttataaactttttactagttgacttgaccactttttatcattttccaacac 541  Q
    |||||||||||| |||||||| ||||||||||| |||  |||| ||||||| ||||||||| |   ||||| || | || |||||| || || |||||||    
T  55465595 caatggttaaggaaaccaaaaatagtagttttatattagaaactacaattt-taaacttttaaaatgttgaattcatcattttttaccacttcccaacac 55465497  T
Q  542 aaaatttctatt 553  Q
    || |||||||||    
T  55465496 aatatttctatt 55465485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 228 - 270
Target Start/End: Complemental strand, 23210931 - 23210889
Alignment:
Q  228 tctcacattagatgaaaaaatggatgttgaacagtttataagt 270  Q
    ||||| ||||||||||||||||||||||||||| | |||||||    
T  23210931 tctcatattagatgaaaaaatggatgttgaacactatataagt 23210889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 529 - 595
Target Start/End: Original strand, 32131204 - 32131270
Alignment:
Q  529 cattttccaacacaaaatttctatttttattcctttatccaatgtccaaaggacaatggttagcatt 595  Q
    |||||||||| || | ||||||||||||||  ||||||||||||| | |||| ||||||||| ||||    
T  32131204 cattttccaatactatatttctatttttatctctttatccaatgttccaagggcaatggttaacatt 32131270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 545 - 595
Target Start/End: Complemental strand, 35808427 - 35808377
Alignment:
Q  545 atttctatttttattcctttatccaatgtccaaaggacaatggttagcatt 595  Q
    |||||||||||||| || |||||||||| || |||| ||||||||||||||    
T  35808427 atttctatttttatccccttatccaatgccccaagggcaatggttagcatt 35808377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 545 - 595
Target Start/End: Original strand, 54339190 - 54339240
Alignment:
Q  545 atttctatttttattcctttatccaatgtccaaaggacaatggttagcatt 595  Q
    |||| ||||||||| ||||||||||||| || || ||||||||||||||||    
T  54339190 atttatatttttatccctttatccaatgccccaacgacaatggttagcatt 54339240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 545 - 595
Target Start/End: Original strand, 55669817 - 55669867
Alignment:
Q  545 atttctatttttattcctttatccaatgtccaaaggacaatggttagcatt 595  Q
    |||||||||||||| || |||||||||| || |||| ||||||||||||||    
T  55669817 atttctatttttatccccttatccaatgccccaagggcaatggttagcatt 55669867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 546 - 595
Target Start/End: Complemental strand, 19328777 - 19328728
Alignment:
Q  546 tttctatttttattcctttatccaatgtccaaaggacaatggttagcatt 595  Q
    ||||||||||||| || |||||||||| || ||| |||||||||||||||    
T  19328777 tttctatttttatccccttatccaatgccctaagaacaatggttagcatt 19328728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 519 - 595
Target Start/End: Original strand, 2362683 - 2362759
Alignment:
Q  519 cactttttatcattttccaacacaaaatttctatttttattcctttatccaatgtccaaaggacaatggttagcatt 595  Q
    ||||||| | |||||||||| || | |||| ||||||||| || |||||| ||| || |||| ||||||||||||||    
T  2362683 cacttttcaccattttccaatactatatttttatttttatccccttatccgatgccccaagggcaatggttagcatt 2362759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 117; Significance: 3e-59; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 448 - 600
Target Start/End: Complemental strand, 46055901 - 46055749
Alignment:
Q  448 ttaaggtaaccaaaattagtagttttacattgaaaacaacaatttataaactttttactagttgacttgaccactttttatcattttccaacacaaaatt 547  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| |||||||||||| ||||||||||||||||||||||||||||    
T  46055901 ttaaggtaaccaaaattagtagttttacattaaaaacaacaatttattaactttttacaagttgacttgactactttttatcattttccaacacaaaatt 46055802  T
Q  548 tctatttttattcctttatccaatgtccaaaggacaatggttagcatttccct 600  Q
    ||||||||| |||||||||||||||  | |||| |||||||||||||||||||    
T  46055801 tctatttttgttcctttatccaatgctccaagggcaatggttagcatttccct 46055749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 442 - 586
Target Start/End: Original strand, 38611333 - 38611477
Alignment:
Q  442 caatggttaaggtaaccaaaattagtagttttacattgaaaacaacaatttataaactttttactagttgacttgaccactttttatcattttccaacac 541  Q
    |||||||||||||||| ||||||||||| |||| |||| ||||||||||||||||||||||||| |||||||||||| ||||| ||||||||||||||||    
T  38611333 caatggttaaggtaactaaaattagtagctttatattggaaacaacaatttataaactttttacaagttgacttgacaactttctatcattttccaacac 38611432  T
Q  542 aaaatttctatttttattcctttatccaatgtccaaaggacaatg 586  Q
    ||||||||||||||| |||||||||||||||||| |||| |||||    
T  38611433 aaaatttctatttttcttcctttatccaatgtcccaagggcaatg 38611477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 427 - 556
Target Start/End: Complemental strand, 38014785 - 38014657
Alignment:
Q  427 ttgctaaccattgcccaatggttaaggtaaccaaaattagtagttttacattgaaaacaacaatttataaactttttactagttgacttgaccacttttt 526  Q
    |||| |||||||||| | |||||||||||| |||||||||||| ||||||||| ||||||| ||||||||||||||||  ||||||||||||||||||||    
T  38014785 ttgcaaaccattgccta-tggttaaggtaatcaaaattagtagctttacattggaaacaacgatttataaactttttataagttgacttgaccacttttt 38014687  T
Q  527 atcattttccaacacaaaatttctattttt 556  Q
    |||||||||||||||||||||| |||||||    
T  38014686 atcattttccaacacaaaatttatattttt 38014657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 454 - 570
Target Start/End: Complemental strand, 36473426 - 36473310
Alignment:
Q  454 taaccaaaattagtagttttacattgaaaacaacaatttataaactttttactagttgacttgaccactttttatcattttccaacacaaaatttctatt 553  Q
    |||||||||||||||| ||| ||||||||| |||||||||||||||||||||  ||||||||||||||||||||||||||| ||||||||| ||||||||    
T  36473426 taaccaaaattagtagctttgcattgaaaataacaatttataaactttttacacgttgacttgaccactttttatcatttttcaacacaaattttctatt 36473327  T
Q  554 tttattcctttatccaa 570  Q
    ||| |||||||||||||    
T  36473326 tttgttcctttatccaa 36473310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 442 - 601
Target Start/End: Original strand, 20499308 - 20499466
Alignment:
Q  442 caatggttaaggtaaccaaaattagtagttttacattgaaaacaacaatttataaactttttactagttgacttgaccactttttatcattttccaacac 541  Q
    |||||||||| ||||||||||||| |||||||| ||| |||| || |||||||||||||||||  | |||||||||  |||||||||| |||| ||||||    
T  20499308 caatggttaaagtaaccaaaattaatagttttatattaaaaataataatttataaactttttataaattgacttgattactttttatcgtttt-caacac 20499406  T
Q  542 aaaatttctatttttattcctttatccaatgtccaaaggacaatggttagcatttccctt 601  Q
    ||||||||||||||| |||||||||||||||| | |||  ||||| ||||||||||||||    
T  20499407 aaaatttctatttttgttcctttatccaatgttccaagagcaatgattagcatttccctt 20499466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 480 - 601
Target Start/End: Complemental strand, 52313558 - 52313438
Alignment:
Q  480 aaaacaacaatttataaactttttactagttgacttgaccactttttatcattttccaacacaaaatttctatttttattcctttatccaatgtccaaag 579  Q
    |||| |||||||||||||| |||||  |||||| ||||||||||||||| |||||  ||||||||||||  |||||| |||||||||||||||  | |||    
T  52313558 aaaaaaacaatttataaaccttttataagttgatttgaccactttttatgattttt-aacacaaaattttgatttttgttcctttatccaatgctccaag 52313460  T
Q  580 gacaatggttagcatttccctt 601  Q
    |||||||||||| |||| ||||    
T  52313459 gacaatggttagaattttcctt 52313438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 453 - 572
Target Start/End: Complemental strand, 32734623 - 32734504
Alignment:
Q  453 gtaaccaaaattagtagttttacattgaaaacaacaatttataaactttttactagttgacttgaccactttttatcattttccaacacaaaatttctat 552  Q
    ||||| ||||||||||| |||  |||| |||||||||||| ||| |||||||  |||||||||||||| |||||| || ||| ||||| || ||| ||||    
T  32734623 gtaactaaaattagtagctttgtattggaaacaacaatttctaacctttttagaagttgacttgaccattttttaccacttttcaacataatattgctat 32734524  T
Q  553 ttttattcctttatccaatg 572  Q
    ||||||| | ||| ||||||    
T  32734523 ttttatttccttaaccaatg 32734504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 519 - 595
Target Start/End: Complemental strand, 25102379 - 25102303
Alignment:
Q  519 cactttttatcattttccaacacaaaatttctatttttattcctttatccaatgtccaaaggacaatggttagcatt 595  Q
    ||||||||| ||||||||||  | | ||||||||||||||  | ||||||||||||| |||| ||||||||||||||    
T  25102379 cactttttaccattttccaatgctatatttctatttttatctcattatccaatgtcccaagggcaatggttagcatt 25102303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 476 - 574
Target Start/End: Complemental strand, 21195379 - 21195281
Alignment:
Q  476 attgaaaacaacaatttataaactttttactagttgacttgaccactttttatcattttccaacacaaaatttctatttttattcctttatccaatgtc 574  Q
    |||| ||| |||||||| | ||||||| |  |||||| || ||||||||| |||| |||||||||  | |||||||||||| |||||||| ||||||||    
T  21195379 attggaaataacaattttttaacttttaaaaagttgaattcaccacttttcatcactttccaacaagatatttctatttttgttcctttaaccaatgtc 21195281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 545 - 595
Target Start/End: Complemental strand, 48136754 - 48136704
Alignment:
Q  545 atttctatttttattcctttatccaatgtccaaaggacaatggttagcatt 595  Q
    ||||||||||||||||| |||||||||  || |||||||||||||||||||    
T  48136754 atttctatttttattcccttatccaataccccaaggacaatggttagcatt 48136704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 448 - 553
Target Start/End: Original strand, 9189203 - 9189308
Alignment:
Q  448 ttaaggtaaccaaaattagtagttttacattgaaaacaacaatttataaactttttactagttgacttgaccactttttatcattttccaacacaaaatt 547  Q
    |||||| |||||||| |||||||||||||| |||||| |||||||  | || ||| |  |||||| || | ||||||||| || ||||||||| || |||    
T  9189203 ttaaggaaaccaaaaatagtagttttacatagaaaactacaattttcacacatttaaaaagttgaattcatcactttttaccactttccaacataatatt 9189302  T
Q  548 tctatt 553  Q
    ||||||    
T  9189303 tctatt 9189308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 455 - 502
Target Start/End: Complemental strand, 31378590 - 31378543
Alignment:
Q  455 aaccaaaattagtagttttacattgaaaacaacaatttataaactttt 502  Q
    |||||||| |||||||||||||||||||||||  |||| |||||||||    
T  31378590 aaccaaaagtagtagttttacattgaaaacaatgatttttaaactttt 31378543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 524 - 595
Target Start/End: Original strand, 31647351 - 31647422
Alignment:
Q  524 tttatcattttccaacacaaaatttctatttttattcctttatccaatgtccaaaggacaatggttagcatt 595  Q
    ||||||||||| |||  | | |||| ||||||||| || |||| |||||||| |||||||||||||||||||    
T  31647351 tttatcatttttcaatgctatatttatatttttatccccttattcaatgtccgaaggacaatggttagcatt 31647422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 545 - 595
Target Start/End: Original strand, 1803966 - 1804016
Alignment:
Q  545 atttctatttttattcctttatccaatgtccaaaggacaatggttagcatt 595  Q
    |||||||||||||| || |||||||||| || |||||||||| ||||||||    
T  1803966 atttctatttttatccccttatccaatgccccaaggacaatgattagcatt 1804016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 443 - 548
Target Start/End: Complemental strand, 6822935 - 6822827
Alignment:
Q  443 aatggttaaggtaaccaaaattagtagttttacattgaaa---acaacaatttataaactttttactagttgacttgaccactttttatcattttccaac 539  Q
    ||||||||||| |||||||| || || |||||||||||||   || |||||||  |||||||| |  |||||| || | ||||||||| || ||||||||    
T  6822935 aatggttaaggaaaccaaaaataataattttacattgaaaactactacaattttaaaacttttaaaaagttgaattcatcactttttaccactttccaac 6822836  T
Q  540 acaaaattt 548  Q
    |||| ||||    
T  6822835 acaatattt 6822827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 545 - 595
Target Start/End: Original strand, 41346352 - 41346402
Alignment:
Q  545 atttctatttttattcctttatccaatgtccaaaggacaatggttagcatt 595  Q
    |||||||||||||| || |||||||||| || |||||||||||||| ||||    
T  41346352 atttctatttttatccccttatccaatgccccaaggacaatggttaacatt 41346402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 522 - 595
Target Start/End: Complemental strand, 29915629 - 29915556
Alignment:
Q  522 tttttatcattttccaacacaaaatttctatttttattcctttatccaatgtccaaaggacaatggttagcatt 595  Q
    |||||| |||||||||| || | |||| ||||||||| || |||||||| | || |||| ||||||||||||||    
T  29915629 tttttaccattttccaatactatatttttatttttatccccttatccaacgccccaagggcaatggttagcatt 29915556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 522 - 595
Target Start/End: Complemental strand, 29964782 - 29964709
Alignment:
Q  522 tttttatcattttccaacacaaaatttctatttttattcctttatccaatgtccaaaggacaatggttagcatt 595  Q
    |||||| |||||||||| || | |||| ||||||||| || |||||||| | || |||| ||||||||||||||    
T  29964782 tttttaccattttccaatactatatttttatttttatccccttatccaacgccccaagggcaatggttagcatt 29964709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 519 - 595
Target Start/End: Complemental strand, 8715558 - 8715483
Alignment:
Q  519 cactttttatcattttccaacacaaaatttctatttttattcctttatccaatgtccaaaggacaatggttagcatt 595  Q
    ||||||| | ||||||||||  | | |||||||||||||  |||| |||||||| || |||||||||||||||||||    
T  8715558 cacttttcaccattttccaatgctatatttctatttttacccctt-atccaatgccctaaggacaatggttagcatt 8715483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 519 - 595
Target Start/End: Complemental strand, 9067445 - 9067370
Alignment:
Q  519 cactttttatcattttccaacacaaaatttctatttttattcctttatccaatgtccaaaggacaatggttagcatt 595  Q
    ||||||| | ||||||||||  | | |||||||||||||  |||| |||||||| || |||||||||||||||||||    
T  9067445 cacttttcaccattttccaatgctatatttctatttttacccctt-atccaatgccctaaggacaatggttagcatt 9067370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 447 - 499
Target Start/End: Complemental strand, 24980178 - 24980126
Alignment:
Q  447 gttaaggtaaccaaaattagtagttttacattgaaaacaacaatttataaact 499  Q
    ||||||| ||||||||||||||  ||||  ||| |||||||||||||||||||    
T  24980178 gttaaggcaaccaaaattagtaactttatgttggaaacaacaatttataaact 24980126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 448 - 552
Target Start/End: Original strand, 33641233 - 33641337
Alignment:
Q  448 ttaaggtaaccaaaattagtagttttacattgaaaacaacaatttataaactttttactagttgacttgaccactttttatcattttccaacacaaaatt 547  Q
    |||||| || ||||| |||||||||||| |||||||| |||||||  |||||||| |  |||||| || | || |||| | || ||||||||| || |||    
T  33641233 ttaaggaaaacaaaaatagtagttttacgttgaaaactacaattttaaaacttttaaaaagttgaatttatcatttttcaccaatttccaacataatatt 33641332  T
Q  548 tctat 552  Q
    |||||    
T  33641333 tctat 33641337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 114; Significance: 2e-57; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 442 - 599
Target Start/End: Complemental strand, 9991574 - 9991417
Alignment:
Q  442 caatggttaaggtaaccaaaattagtagttttacattgaaaacaacaatttataaactttttactagttgacttgaccactttttatcattttccaacac 541  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| |||||| ||||| ||||||||||||||||||| ||    
T  9991574 caatggttaaggtaatcaaaattagtagttttacattgaaaacaacaatttataaattttttacaagttgatttgactactttttatcattttccaatac 9991475  T
Q  542 aaaatttctatttttattcctttatccaatgtccaaaggacaatggttagcatttccc 599  Q
    ||||||||||||||| || |||||||||||| || |||| ||||||||||||||||||    
T  9991474 aaaatttctatttttgtttctttatccaatgccccaagggcaatggttagcatttccc 9991417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 444 - 572
Target Start/End: Original strand, 41464262 - 41464390
Alignment:
Q  444 atggttaaggtaaccaaaattagtagttttacattgaaaacaacaatttataaactttttactagttgacttgaccactttttatcattttccaacacaa 543  Q
    |||||||||||||||||||||||||  ||||||||| ||||||||||||||||||||||||| ||||||||||||| |||||||| ||||| ||| ||||    
T  41464262 atggttaaggtaaccaaaattagtatctttacattggaaacaacaatttataaactttttacaagttgacttgaccgctttttataatttttcaatacaa 41464361  T
Q  544 aatttctatttttattcctttatccaatg 572  Q
    ||||||||||||||||||||||| |||||    
T  41464362 aatttctatttttattcctttattcaatg 41464390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 442 - 598
Target Start/End: Complemental strand, 32354863 - 32354707
Alignment:
Q  442 caatggttaaggtaaccaaaattagtagttttacattgaaaacaacaatttataaactttttactagttgacttgaccactttttatcattttccaacac 541  Q
    |||| |||||||||||||||||||||| |||||||||| ||| || |||||||||||||||||| |||||||||||||||||||||||||||| |||||     
T  32354863 caatagttaaggtaaccaaaattagtaattttacattgtaaataataatttataaactttttacaagttgacttgaccactttttatcatttttcaacag 32354764  T
Q  542 aaaatttctatttttattcctttatccaatgtccaaaggacaatggttagcatttcc 598  Q
     || ||| ||||||| ||||||||||||||  || | | ||||||||||||||||||    
T  32354763 gaattttttatttttgttcctttatccaataccccatgaacaatggttagcatttcc 32354707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 442 - 600
Target Start/End: Original strand, 6084681 - 6084840
Alignment:
Q  442 caatggttaaggtaaccaaaattagtagttttacattgaaaacaacaatttataaactttttactagttgacttgaccactttttatcattttccaacac 541  Q
    ||||| |||||||||| ||||||||||| ||||||||| |||||| | |||||||||||||||| | |||||||||||||||||||||||||| ||| ||    
T  6084681 caatgattaaggtaactaaaattagtagctttacattggaaacaatattttataaactttttacaaattgacttgaccactttttatcatttttcaatac 6084780  T
Q  542 aaaatttct-atttttattcctttatccaatgtccaaaggacaatggttagcatttccct 600  Q
    ||| ||| | |||||| ||||||||||||||  || |||| |||||||||||||||||||    
T  6084781 aaattttttaatttttgttcctttatccaataccctaagggcaatggttagcatttccct 6084840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 442 - 551
Target Start/End: Complemental strand, 3095173 - 3095064
Alignment:
Q  442 caatggttaaggtaaccaaaattagtagttttacattgaaaacaacaatttataaactttttactagttgacttgaccactttttatcattttccaacac 541  Q
    ||||||||||||||||||||||||||| |||||||||  |||||| |||||||||||||||||| |||||| ||||| | ||||||||||||||||||||    
T  3095173 caatggttaaggtaaccaaaattagtacttttacattagaaacaataatttataaactttttacaagttgatttgactattttttatcattttccaacac 3095074  T
Q  542 aaaatttcta 551  Q
    ||||||||||    
T  3095073 aaaatttcta 3095064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 442 - 544
Target Start/End: Original strand, 36402439 - 36402541
Alignment:
Q  442 caatggttaaggtaaccaaaattagtagttttacattgaaaacaacaatttataaactttttactagttgacttgaccactttttatcattttccaacac 541  Q
    ||||| ||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| |||| ||||||| |||||| ||||||||| |||||    
T  36402439 caatgattaaggtaaccaaaattagtagttttatattggaaacaacaatttataaactttttacaagttaacttgactacttttgatcattttcgaacac 36402538  T
Q  542 aaa 544  Q
    |||    
T  36402539 aaa 36402541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 454 - 601
Target Start/End: Original strand, 40356405 - 40356551
Alignment:
Q  454 taaccaaaattagtagttttacattgaaaacaacaatttataaactttttactagttgacttgaccactttttatcattttccaacacaaaatttctatt 553  Q
    |||||||||||||||  |||| |||| ||||||||||||||||||||| ||| | || | || ||||||||||||||||||  |||| |||||||| |||    
T  40356405 taaccaaaattagtaactttatattggaaacaacaatttataaactttatacaaattaatttaaccactttttatcattttttaacataaaatttc-att 40356503  T
Q  554 tttattcctttatccaatgtccaaaggacaatggttagcatttccctt 601  Q
    ||| ||||||||||||||| || || ||||||||||| ||||||||||    
T  40356504 tttgttcctttatccaatgccccaaagacaatggttaacatttccctt 40356551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 507 - 601
Target Start/End: Original strand, 5711166 - 5711260
Alignment:
Q  507 agttgacttgaccactttttatcattttccaacacaaaatttctatttttattcctttatccaatgtccaaaggacaatggttagcatttccctt 601  Q
    |||||||||||| | ||||||||||||||||||||||||||| |||||||||||||||||| ||||||  || | ||||||||| ||||||||||    
T  5711166 agttgacttgacaattttttatcattttccaacacaaaatttttatttttattcctttatctaatgtcttaaaggcaatggttaacatttccctt 5711260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 499 - 572
Target Start/End: Original strand, 18904248 - 18904321
Alignment:
Q  499 tttttactagttgacttgaccactttttatcattttccaacacaaaatttctatttttattcctttatccaatg 572  Q
    ||||||| ||||||||| || ||||||||||||||||||||||||||||||||||||| |||| |||| |||||    
T  18904248 tttttacaagttgacttaactactttttatcattttccaacacaaaatttctattttttttcccttattcaatg 18904321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 519 - 596
Target Start/End: Complemental strand, 39085849 - 39085772
Alignment:
Q  519 cactttttatcattttccaacacaaaatttctatttttattcctttatccaatgtccaaaggacaatggttagcattt 596  Q
    ||||||||||||||||||||    | |||||||||||||| |||||||||||||||| |||  |||||||||||||||    
T  39085849 cactttttatcattttccaatgttatatttctatttttatccctttatccaatgtcccaagagcaatggttagcattt 39085772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 545 - 595
Target Start/End: Complemental strand, 17095098 - 17095048
Alignment:
Q  545 atttctatttttattcctttatccaatgtccaaaggacaatggttagcatt 595  Q
    |||||||||||||| ||||||||||||| || ||| |||||||||||||||    
T  17095098 atttctatttttatccctttatccaatgccctaagaacaatggttagcatt 17095048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 550 - 601
Target Start/End: Complemental strand, 3094918 - 3094867
Alignment:
Q  550 tatttttattcctttatccaatgtccaaaggacaatggttagcatttccctt 601  Q
    ||||||||||||||||||||||  || || | ||||||||||||||||||||    
T  3094918 tatttttattcctttatccaataccccaaaggcaatggttagcatttccctt 3094867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 545 - 595
Target Start/End: Complemental strand, 765181 - 765131
Alignment:
Q  545 atttctatttttattcctttatccaatgtccaaaggacaatggttagcatt 595  Q
    |||||||||||||| || |||||||||| || |||| ||||||||||||||    
T  765181 atttctatttttatccccttatccaatgccccaagggcaatggttagcatt 765131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 447 - 601
Target Start/End: Complemental strand, 2958598 - 2958444
Alignment:
Q  447 gttaaggtaaccaaaattagtagttttacattgaaaacaacaatttataaactttttactagttgacttgaccactttttatcattttccaacacaaaat 546  Q
    ||||||| ||| |||| ||||||||||||||||||||  |||||||  |||||||| |  |||| | || |  |||||| | || |||||||||||| ||    
T  2958598 gttaaggaaactaaaaatagtagttttacattgaaaaatacaattttcaaacttttaaaaagttaaattcataacttttcaccactttccaacacaatat 2958499  T
Q  547 ttctatttttattcctttatccaatgtccaaaggacaatggttagcatttccctt 601  Q
    ||  ||| || ||| ||||  |||||||| ||||||| |  ||||||||| ||||    
T  2958498 tttcattattgttcttttaaacaatgtcccaaggacactatttagcattttcctt 2958444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 545 - 595
Target Start/End: Complemental strand, 17056089 - 17056039
Alignment:
Q  545 atttctatttttattcctttatccaatgtccaaaggacaatggttagcatt 595  Q
    |||||| ||||||| ||||||||||||| || |||| ||||||||||||||    
T  17056089 atttctttttttatccctttatccaatgccctaagggcaatggttagcatt 17056039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 545 - 595
Target Start/End: Complemental strand, 17068536 - 17068486
Alignment:
Q  545 atttctatttttattcctttatccaatgtccaaaggacaatggttagcatt 595  Q
    |||||| ||||||| ||||||||||||| || |||| ||||||||||||||    
T  17068536 atttctttttttatccctttatccaatgccctaagggcaatggttagcatt 17068486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 545 - 595
Target Start/End: Complemental strand, 17074519 - 17074469
Alignment:
Q  545 atttctatttttattcctttatccaatgtccaaaggacaatggttagcatt 595  Q
    |||||||||||||| |||||||| |||| || |||| ||||||||||||||    
T  17074519 atttctatttttatccctttatctaatgccctaagggcaatggttagcatt 17074469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 545 - 595
Target Start/End: Complemental strand, 39401566 - 39401516
Alignment:
Q  545 atttctatttttattcctttatccaatgtccaaaggacaatggttagcatt 595  Q
    |||||||||||||| || |||||||||| || |||| ||||||||||||||    
T  39401566 atttctatttttatccccttatccaatgccccaagggcaatggttagcatt 39401516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 442 - 575
Target Start/End: Complemental strand, 10740530 - 10740397
Alignment:
Q  442 caatggttaaggtaaccaaaattagtagttttacattgaaaacaacaatttataaactttttactagttgacttgaccactttttatcattttccaacac 541  Q
    |||||||||||  || ||||| |||||||||||||||||| |  ||||||| ||||||||| |  | |||| || | ||||||||| || || |  ||||    
T  10740530 caatggttaagaaaatcaaaaatagtagttttacattgaagattacaatttttaaacttttaaaaaattgaattcatcactttttaccacttcctcacac 10740431  T
Q  542 aaaatttctatttttattcctttatccaatgtcc 575  Q
    || |||| |||| ||  ||||||| |||||||||    
T  10740430 aatatttatattattgctcctttaaccaatgtcc 10740397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 519 - 595
Target Start/End: Original strand, 862641 - 862717
Alignment:
Q  519 cactttttatcattttccaacacaaaatttctatttttattcctttatccaatgtccaaaggacaatggttagcatt 595  Q
    ||||||| | |||||||||| || | |||||||||||||| || |||| ||||| || |||| |||| |||||||||    
T  862641 cacttttcaccattttccaatactatatttctatttttatcccattattcaatgccctaagggcaattgttagcatt 862717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 109; Significance: 2e-54; HSPs: 28)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 442 - 602
Target Start/End: Original strand, 48033876 - 48034036
Alignment:
Q  442 caatggttaaggtaaccaaaattagtagttttacattgaaaacaacaatttataaactttttactagttgacttgaccactttttatcattttccaacac 541  Q
    |||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| ||||| |||||||||||||  || |||||||||||    
T  48033876 caatggttaaggtaaccaaaattagtagctttacattggaaacaacaatttataaactttttacaagttggcttgaccacttttcttctttttccaacac 48033975  T
Q  542 aaaatttctatttttattcctttatccaatgtccaaaggacaatggttagcatttcccttc 602  Q
    ||||||||||||||| |||||||||| |||| || |||| ||||| |||||||||||||||    
T  48033976 aaaatttctatttttgttcctttatctaatgccccaagggcaatgattagcatttcccttc 48034036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 442 - 601
Target Start/End: Original strand, 4551040 - 4551199
Alignment:
Q  442 caatggttaaggtaaccaaaattagtagttttacattgaaaacaacaatttataaactttttactagttgacttgaccactttttatcattttccaacac 541  Q
    |||| ||||||||||||||||||| ||| ||||||| | ||||||||||||||||||||||||| ||| ||||||||||||||| |||||||||||||||    
T  4551040 caatagttaaggtaaccaaaattaatagctttacatcgtaaacaacaatttataaactttttacaagtcgacttgaccacttttcatcattttccaacac 4551139  T
Q  542 aaaatttctatttttattcctttatccaatgtccaaaggacaatggttagcatttccctt 601  Q
    ||||||||||||||| |||| ||||||||||    |||||||||||||| |||| |||||    
T  4551140 aaaatttctatttttgttccattatccaatgcatcaaggacaatggttaacattaccctt 4551199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 442 - 601
Target Start/End: Original strand, 26060165 - 26060327
Alignment:
Q  442 caatggttaaggtaaccaaaattagtagttttacattgaaaacaacaatttataaactttttactagttgacttgaccac----tttttatcattttcca 537  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| ||||||||    ||||||||||||| ||    
T  26060165 caatggttaaggtaaccaaaattagtagttttacattggaaacaacaatttataaactttttacaagttgatttgaccactttttttttatcatttttca 26060264  T
Q  538 acacaaaatttctatttttattcctttatccaatgtccaaaggacaatggttagcatttccctt 601  Q
     || |||||||||||||||||| | ||||||||||  | |||| ||||||||||||||||||||    
T  26060265 gcataaaatttctatttttatttc-ttatccaatgctccaagggcaatggttagcatttccctt 26060327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 442 - 595
Target Start/End: Complemental strand, 37275392 - 37275239
Alignment:
Q  442 caatggttaaggtaaccaaaattagtagttttacattgaaaacaacaatttataaactttttactagttgacttgaccactttttatcattttccaacac 541  Q
    ||||| ||||||||| |||||||| ||||||||||||| ||||||||||||||||||||||||  ||||| |||||||| ||||||||||||||||| ||    
T  37275392 caatgcttaaggtaatcaaaattattagttttacattggaaacaacaatttataaactttttataagttgtcttgaccattttttatcattttccaatac 37275293  T
Q  542 aaaatttctatttttattcctttatccaatgtccaaaggacaatggttagcatt 595  Q
    ||||||||||||||| | ||||||||||||| |  |||| ||||||||||||||    
T  37275292 aaaatttctatttttgtacctttatccaatgcctgaagggcaatggttagcatt 37275239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 442 - 601
Target Start/End: Complemental strand, 3077177 - 3077019
Alignment:
Q  442 caatggttaaggtaaccaaaattagtagttttacattgaaaacaacaatttataaactttttactagttgacttgaccactttttatcattttccaacac 541  Q
    |||||||||||||||| ||||||||||  ||||||||| |||||| |||||||||| ||||||| |||| | ||||||||||||||| ||||||||||||    
T  3077177 caatggttaaggtaactaaaattagtaactttacattgtaaacaataatttataaattttttacaagttaatttgaccactttttattattttccaacac 3077078  T
Q  542 aaaatttctatttttattcctttatccaatgtccaaaggacaatggttagcatttccctt 601  Q
    ||||||||||||||||||||||||||||||   ||||  ||||| |||||||||||||||    
T  3077077 aaaatttctatttttattcctttatccaatactcaaa-aacaatagttagcatttccctt 3077019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 442 - 571
Target Start/End: Complemental strand, 39873451 - 39873321
Alignment:
Q  442 caatggttaaggtaaccaaaattagtagtttta-cattgaaaacaacaatttataaactttttactagttgacttgaccactttttatcattttccaaca 540  Q
    ||||| |||||||||||||||||| |||||||| ||||| ||||||||||||||||| ||||||| |||||||||||| |||||||||||||||||||||    
T  39873451 caatgattaaggtaaccaaaattaatagttttaacattggaaacaacaatttataaattttttacaagttgacttgactactttttatcattttccaaca 39873352  T
Q  541 caaaatttctatttttattcctttatccaat 571  Q
     ||||||||||||||| ||||||||| ||||    
T  39873351 taaaatttctatttttgttcctttattcaat 39873321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 444 - 572
Target Start/End: Complemental strand, 2351352 - 2351224
Alignment:
Q  444 atggttaaggtaaccaaaattagtagttttacattgaaaacaacaatttataaactttttactagttgacttgaccactttttatcattttccaacacaa 543  Q
    |||||||||||||||||||||| ||| ||||||||| |||||||||||| |||||||||||  |||||||||||||| ||||||||||||| ||||||||    
T  2351352 atggttaaggtaaccaaaattaataggtttacattggaaacaacaatttgtaaactttttataagttgacttgaccattttttatcatttttcaacacaa 2351253  T
Q  544 aatttctatttttattcctttatccaatg 572  Q
    ||||| ||||||| || ||||||||||||    
T  2351252 aatttttatttttgtttctttatccaatg 2351224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 459 - 598
Target Start/End: Complemental strand, 12482490 - 12482352
Alignment:
Q  459 aaaattagtagttttacattgaaaacaacaatttataaactttttactagttgacttgaccactttttatcattttccaacacaaaatttctatttttat 558  Q
    |||||||||||||||||||| ||||||||||||| |||||||||||| |||||| |||| |||||||||||||||||||||||||||||| ||||||| |    
T  12482490 aaaattagtagttttacattaaaaacaacaattt-taaactttttacaagttgatttgatcactttttatcattttccaacacaaaatttttatttttgt 12482392  T
Q  559 tcctttatccaatgtccaaaggacaatggttagcatttcc 598  Q
    ||||||||||||| ||| ||   | |||||||||||||||    
T  12482391 tcctttatccaatatcccaaaagccatggttagcatttcc 12482352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 447 - 572
Target Start/End: Original strand, 30111750 - 30111875
Alignment:
Q  447 gttaaggtaaccaaaattagtagttttacattgaaaacaacaatttataaactttttactagttgacttgaccactttttatcattttccaacacaaaat 546  Q
    |||||||||||||||||||||||||||| |||  |||||||||||| |||| ||||||  |||||||||||||||||||||||||||||| |||||||||    
T  30111750 gttaaggtaaccaaaattagtagttttatattagaaacaacaatttgtaaattttttataagttgacttgaccactttttatcattttccgacacaaaat 30111849  T
Q  547 ttctatttttattcctttatccaatg 572  Q
    || ||||||| |||| ||||||||||    
T  30111850 ttgtatttttgttcccttatccaatg 30111875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 453 - 596
Target Start/End: Complemental strand, 38681027 - 38680884
Alignment:
Q  453 gtaaccaaaattagtagttttacattgaaaacaacaatttataaactttttactagttgacttgaccactttttatcattttccaacacaaaatttctat 552  Q
    ||||||||||||| ||||||||||||| ||||||||||||||||| ||||||| | || ||||||| | ||||||| ||||||||||||||||||| |||    
T  38681027 gtaaccaaaattattagttttacattggaaacaacaatttataaattttttacaaattaacttgacaattttttattattttccaacacaaaatttttat 38680928  T
Q  553 ttttattcctttatccaatgtccaaaggacaatggttagcattt 596  Q
    |  | ||||||||||||||| || |||  |||||||||||||||    
T  38680927 tgatgttcctttatccaatgccccaagagcaatggttagcattt 38680884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 442 - 572
Target Start/End: Complemental strand, 15177155 - 15177025
Alignment:
Q  442 caatggttaaggtaaccaaaattagtagttttacattgaaaacaacaatttataaactttttactagttgacttgaccactttttatcattttccaacac 541  Q
    |||||||||||||||| ||||||| ||||| || |||||||||||| ||||||||| ||||||| |||| |||| |||| ||||||||||| | ||||||    
T  15177155 caatggttaaggtaactaaaattaatagttatatattgaaaacaacgatttataaattttttacaagttaacttaaccattttttatcattgttcaacac 15177056  T
Q  542 aaaatttctatttttattcctttatccaatg 572  Q
    ||||||| ||||||| || ||||||||||||    
T  15177055 aaaatttttatttttgtttctttatccaatg 15177025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 480 - 565
Target Start/End: Original strand, 32512082 - 32512167
Alignment:
Q  480 aaaacaacaatttataaactttttactagttgacttgaccactttttatcattttccaacacaaaatttctatttttattccttta 565  Q
    |||||||||||||||||| ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||    
T  32512082 aaaacaacaatttataaaatttttacaagttgacttgatcactttttatcattttccaacacaaaatttctatttttgttccttta 32512167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 443 - 571
Target Start/End: Original strand, 21029295 - 21029421
Alignment:
Q  443 aatggttaaggtaaccaaaattagtagttttacattgaaaacaacaatttataaactttttactagttgacttgaccactttttatcattttccaacaca 542  Q
    |||| |||||||||| |||||||||||||||||||||||||||| ||||||||||| |||||  |||||||||||  ||||||||||| |||||||| |     
T  21029295 aatgtttaaggtaacaaaaattagtagttttacattgaaaacaataatttataaacattttataagttgacttgataactttttatcactttccaacgc- 21029393  T
Q  543 aaatttctatttttattcctttatccaat 571  Q
     ||||| ||||||| || ||| |||||||    
T  21029394 -aatttttatttttgtttcttcatccaat 21029421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 459 - 572
Target Start/End: Complemental strand, 4081318 - 4081205
Alignment:
Q  459 aaaattagtagttttacattgaaaacaacaatttataaactttttactagttgacttgaccactttttatcattttccaacacaaaatttctatttttat 558  Q
    |||||||| | |||||||||| ||| ||||||||| ||||||||||  | || |||||||||||||| |||| ||||||||||| ||||||||||||| |    
T  4081318 aaaattagcaattttacattggaaataacaatttaaaaactttttataaatttacttgaccacttttcatcactttccaacacataatttctatttttgt 4081219  T
Q  559 tcctttatccaatg 572  Q
    | ||||||||||||    
T  4081218 ttctttatccaatg 4081205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 448 - 598
Target Start/End: Original strand, 8903951 - 8904098
Alignment:
Q  448 ttaaggtaaccaaaattagtagttttacattgaaaacaacaatttataaactttttactagttgacttgaccactttttatcattttccaacacaaaatt 547  Q
    |||||||||| ||||||| ||| |||| ||||||||||| ||||||| || ||||||| |||||| || |  | ||||||||||||| ||||||||||||    
T  8903951 ttaaggtaacaaaaattaatagctttatattgaaaacaataatttattaattttttacaagttgattt-atta-tttttatcatttttcaacacaaaatt 8904048  T
Q  548 tctatttttattcctttatccaatgtccaaaggacaatggttagcatttcc 598  Q
    | ||||||| ||| | ||||||||| || ||| ||||| ||||||||||||    
T  8904049 tttatttttgttcatatatccaatg-cctaagaacaatagttagcatttcc 8904098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 442 - 518
Target Start/End: Complemental strand, 16109943 - 16109867
Alignment:
Q  442 caatggttaaggtaaccaaaattagtagttttacattgaaaacaacaatttataaactttttactagttgacttgac 518  Q
    |||||||||| |||| || ||||||||| ||||||||||||| ||||| || |||||||||||| |||||| |||||    
T  16109943 caatggttaaagtaaacacaattagtagctttacattgaaaataacaacttgtaaactttttacaagttgatttgac 16109867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 545 - 595
Target Start/End: Complemental strand, 27209749 - 27209699
Alignment:
Q  545 atttctatttttattcctttatccaatgtccaaaggacaatggttagcatt 595  Q
    |||||||||||||| ||||||||||||| || |||||||||||||||||||    
T  27209749 atttctatttttatccctttatccaatgccccaaggacaatggttagcatt 27209699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 447 - 555
Target Start/End: Original strand, 46065316 - 46065425
Alignment:
Q  447 gttaaggtaaccaaaattagtagttttacattgaaaacaacaatttataaactttttactagtt-gacttgaccactttttatcattttccaacacaaaa 545  Q
    |||||||||||||| |||| ||| |||| |||| ||||||| |||| |||| ||||||| |||| |||| || || |||||| |||||||||| |||| |    
T  46065316 gttaaggtaaccaagattaatagctttatattggaaacaacgatttttaaattttttacaagttagactcgatcattttttaccattttccaatacaaca 46065415  T
Q  546 tttctatttt 555  Q
    ||| ||||||    
T  46065416 tttttatttt 46065425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 545 - 595
Target Start/End: Complemental strand, 41147506 - 41147456
Alignment:
Q  545 atttctatttttattcctttatccaatgtccaaaggacaatggttagcatt 595  Q
    |||||||||||||| || |||||||||| || |||||||||||||||||||    
T  41147506 atttctatttttatccccttatccaatgccccaaggacaatggttagcatt 41147456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 519 - 595
Target Start/End: Complemental strand, 22346291 - 22346215
Alignment:
Q  519 cactttttatcattttccaacacaaaatttctatttttattcctttatccaatgtccaaaggacaatggttagcatt 595  Q
    ||||||| | |||||| ||| || | ||||||||||||||||| |||||||| | || |||| ||||||||||||||    
T  22346291 cacttttcaccatttttcaatactatatttctatttttattcccttatccaaagccccaagggcaatggttagcatt 22346215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 519 - 595
Target Start/End: Original strand, 34874619 - 34874695
Alignment:
Q  519 cactttttatcattttccaacacaaaatttctatttttattcctttatccaatgtccaaaggacaatggttagcatt 595  Q
    ||||||| | ||||||||||  | | |||||||||||||| || |||||||||| || |||| ||||||||||||||    
T  34874619 cacttttcaccattttccaatgctatatttctatttttatccccttatccaatgccccaagggcaatggttagcatt 34874695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 545 - 595
Target Start/End: Complemental strand, 2125735 - 2125685
Alignment:
Q  545 atttctatttttattcctttatccaatgtccaaaggacaatggttagcatt 595  Q
    |||||||||||||| || |||||||||| || ||| |||||||||||||||    
T  2125735 atttctatttttatccccttatccaatgccccaagaacaatggttagcatt 2125685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 545 - 595
Target Start/End: Original strand, 5945498 - 5945548
Alignment:
Q  545 atttctatttttattcctttatccaatgtccaaaggacaatggttagcatt 595  Q
    ||||||||||||||| | ||||||||||  | |||||||||||||||||||    
T  5945498 atttctatttttatttcgttatccaatgctccaaggacaatggttagcatt 5945548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 455 - 497
Target Start/End: Complemental strand, 22416716 - 22416674
Alignment:
Q  455 aaccaaaattagtagttttacattgaaaacaacaatttataaa 497  Q
    |||||||| |||||||||| ||||| |||||||||||||||||    
T  22416716 aaccaaaagtagtagttttgcattggaaacaacaatttataaa 22416674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 442 - 600
Target Start/End: Original strand, 39323379 - 39323537
Alignment:
Q  442 caatggttaaggtaaccaaaattagtagttttacattgaaaacaacaatttataaactttttactagttgacttgaccactttttatcattttccaacac 541  Q
    |||||||||| | ||  |||| ||||||||||| |||  |||| |||||||  |||||||| |   ||||| || | ||||||||| || ||||||||||    
T  39323379 caatggttaaagaaataaaaaatagtagttttatattagaaactacaattttcaaacttttaaaatgttgaattcatcactttttaccactttccaacac 39323478  T
Q  542 aaaatttctatttttattcctttatccaatgtccaaaggacaatggttagcatttccct 600  Q
    || ||||||||| || |||  ||| ||||||| | ||| ||| |  |||||||||||||    
T  39323479 aatatttctattattgttcacttaaccaatgtactaagaacactctttagcatttccct 39323537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 522 - 595
Target Start/End: Original strand, 11386036 - 11386109
Alignment:
Q  522 tttttatcattttccaacacaaaatttctatttttattcctttatccaatgtccaaaggacaatggttagcatt 595  Q
    |||||| ||||||||||  | | |||||||||||||| |  ||||| ||||||| |||||||||||| ||||||    
T  11386036 tttttaccattttccaatgctatatttctatttttatccaattatctaatgtcccaaggacaatggtgagcatt 11386109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 519 - 595
Target Start/End: Original strand, 40845303 - 40845379
Alignment:
Q  519 cactttttatcattttccaacacaaaatttctatttttattcctttatccaatgtccaaaggacaatggttagcatt 595  Q
    ||||||| | |||||| ||| || | |||||||||||||| || |||| |||||||  |||| ||||||||||||||    
T  40845303 cacttttcaccatttttcaatactatatttctatttttatccccttattcaatgtctcaagggcaatggttagcatt 40845379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 545 - 601
Target Start/End: Complemental strand, 49508762 - 49508706
Alignment:
Q  545 atttctatttttattcctttatccaatgtccaaaggacaatggttagcatttccctt 601  Q
    |||||||||||||| || |||||||||| || |||| ||||||||| ||||| ||||    
T  49508762 atttctatttttatccccttatccaatgccccaagggcaatggttaacattttcctt 49508706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 104; Significance: 2e-51; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 442 - 601
Target Start/End: Complemental strand, 33338373 - 33338215
Alignment:
Q  442 caatggttaaggtaaccaaaattagtagttttacattgaaaacaacaatttataaactttttactagttgacttgaccactttttatcattttccaacac 541  Q
    |||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||  |||||||||||| ||||||||||||||||||| ||    
T  33338373 caatggttaaagtaaccaaaattagtagttttacattggaaacaacaatttataaactttttataagttgacttgactactttttatcattttccaa-ac 33338275  T
Q  542 aaaatttctatttttattcctttatccaatgtccaaaggacaatggttagcatttccctt 601  Q
    ||||| |||||||||||||||||||||||||    |||| |||| |||||||||||||||    
T  33338274 aaaatatctatttttattcctttatccaatgcatcaagggcaatagttagcatttccctt 33338215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 427 - 571
Target Start/End: Complemental strand, 28273513 - 28273373
Alignment:
Q  427 ttgctaaccattgcccaatggttaaggtaaccaaaattagtagttttacattgaaaacaacaatttataaactttttactagttgacttgaccacttttt 526  Q
    ||||||||||||||||    |||||||||||||||||||||||||||| |||| |||||||||||||||||||| |||  |||||| || ||||||||||    
T  28273513 ttgctaaccattgccc----gttaaggtaaccaaaattagtagttttatattggaaacaacaatttataaacttgttataagttgatttaaccacttttt 28273418  T
Q  527 atcattttccaacacaaaatttctatttttattcctttatccaat 571  Q
    ||||||||| |||||||| ||||||||||| ||||||||| ||||    
T  28273417 atcattttctaacacaaagtttctatttttgttcctttattcaat 28273373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 443 - 599
Target Start/End: Original strand, 24397457 - 24397611
Alignment:
Q  443 aatggttaaggtaaccaaaattagtagttttacattgaaaacaacaatttataaactttttactagttgacttgaccactttttatcattttccaacaca 542  Q
    ||||| ||||||||||||||||||| | |||| ||||||||||| |||||||||||||||||| |||||||  ||| ||||||||||||||| |||||||    
T  24397457 aatggataaggtaaccaaaattagtggctttagattgaaaacaataatttataaactttttacaagttgacgcgactactttttatcatttttcaacaca 24397556  T
Q  543 aaatttctatttttattcctttatccaatgtccaaaggacaatggttagcatttccc 599  Q
    |||||| || |||| ||||||||| ||||| || |||| ||||| ||||||||||||    
T  24397557 aaattt-ta-ttttgttcctttattcaatgccccaagggcaatgattagcatttccc 24397611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 442 - 601
Target Start/End: Complemental strand, 11680341 - 11680185
Alignment:
Q  442 caatggttaaggtaaccaaaattagtagttttacattgaaaacaacaatttataaactttttactagttgacttgaccactttttatcattttccaacac 541  Q
    |||||||||| ||||||||||||| ||| |||||| || ||||||||||||    ||||||||| ||||||||| || |  |||||||||||||||||||    
T  11680341 caatggttaaagtaaccaaaattaatagctttacactggaaacaacaatttg---actttttacaagttgacttaactatcttttatcattttccaacac 11680245  T
Q  542 aaaatttctatttttattcctttatccaatgtccaaaggacaatggttagcatttccctt 601  Q
    ||||||||||||||| ||||||||| |||   || |||| ||||||||||||||||||||    
T  11680244 aaaatttctatttttgttcctttattcaaaaccccaagggcaatggttagcatttccctt 11680185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 483 - 601
Target Start/End: Original strand, 41530402 - 41530520
Alignment:
Q  483 acaacaatttataaactttttactagttgacttgaccactttttatcattttccaacacaaaatttctatttttattcctttatccaatgtccaaaggac 582  Q
    ||||||||||||||||||||||  |||||||||||||  ||||||||||||| |||||||||||||||||||| |||||||||||||||| |  || | |    
T  41530402 acaacaatttataaactttttataagttgacttgaccgttttttatcattttgcaacacaaaatttctattttcattcctttatccaatgccttaaaggc 41530501  T
Q  583 aatggttagcatttccctt 601  Q
    |||||||||  ||||||||    
T  41530502 aatggttagtctttccctt 41530520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 448 - 601
Target Start/End: Complemental strand, 5108532 - 5108381
Alignment:
Q  448 ttaaggtaaccaaaattagtagttttacattgaaaacaacaatttataaactttttactagttgacttgaccactttttatcattttccaacacaaaatt 547  Q
    ||||||||||||||||||| |||||||||||| ||||||||||||||||| ||||||| | || ||||||||||||||||| ||||| ||||| ||||      
T  5108532 ttaaggtaaccaaaattagcagttttacattggaaacaacaatttataaagtttttacaaattaacttgaccactttttattatttttcaacaaaaaaaa 5108433  T
Q  548 tctatttttattcctttatccaatgtccaaaggacaatggttagcatttccctt 601  Q
    | || |||| ||||||||||||||  |||||  |||||||||||  ||||||||    
T  5108432 t-tacttttgttcctttatccaatacccaaa-aacaatggttagtctttccctt 5108381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 447 - 598
Target Start/End: Complemental strand, 8213143 - 8212993
Alignment:
Q  447 gttaaggtaaccaaaattagtagttttacattgaaaacaacaatttataaactttttactagttgacttgaccactttttatcattttccaacacaaaat 546  Q
    ||||||||||||||||||||||| |||||||   |||||| ||||||||||| |||||| |||||| ||||  | ||||||||||||| ||||| | |||    
T  8213143 gttaaggtaaccaaaattagtagctttacatcagaaacaataatttataaac-ttttacaagttgatttgattattttttatcatttttcaacatagaat 8213045  T
Q  547 ttctatttttattcctttatccaatgtccaaaggacaatggttagcatttcc 598  Q
    || ||||||| ||| |||||  |||| || |||| ||||||||| |||||||    
T  8213044 ttttatttttgttcttttatgtaatgcccgaagggcaatggttaacatttcc 8212993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 508 - 601
Target Start/End: Complemental strand, 19804581 - 19804488
Alignment:
Q  508 gttgacttgaccactttttatcattttccaacacaaaatttctatttttattcctttatccaatgtccaaaggacaatggttagcatttccctt 601  Q
    ||||||||||||| ||||||||| ||| ||||||||||||||||||||| ||||||||| ||||| |  |||| || |  ||||||||||||||    
T  19804581 gttgacttgaccattttttatcacttttcaacacaaaatttctatttttgttcctttattcaatgccacaagggcactatttagcatttccctt 19804488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 228 - 287
Target Start/End: Complemental strand, 36522376 - 36522317
Alignment:
Q  228 tctcacattagatgaaaaaatggatgttgaacagtttataagtgagaggactaataaacc 287  Q
    ||||||||| |||  ||||||||| |||||||| ||||||||||||||||| ||||||||    
T  36522376 tctcacattggatagaaaaatggaagttgaacattttataagtgagaggaccaataaacc 36522317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 519 - 591
Target Start/End: Complemental strand, 338821 - 338749
Alignment:
Q  519 cactttttatcattttccaacacaaaatttctatttttattcctttatccaatgtccaaaggacaatggttag 591  Q
    |||||||||||||||| ||| |  | |||| ||||||||| ||||||||||||| || |||| ||||||||||    
T  338821 cactttttatcatttttcaatatcatatttttatttttatccctttatccaatgccccaagggcaatggttag 338749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 519 - 595
Target Start/End: Complemental strand, 4962573 - 4962498
Alignment:
Q  519 cactttttatcattttccaacacaaaatttctatttttattcctttatccaatgtccaaaggacaatggttagcatt 595  Q
    ||||||| ||||||||||||    | ||||||||||||||||||| ||||||||||| |||| |||||| |||||||    
T  4962573 cacttttcatcattttccaatgttatatttctatttttattcctt-atccaatgtcccaagggcaatgggtagcatt 4962498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 519 - 595
Target Start/End: Original strand, 15915884 - 15915960
Alignment:
Q  519 cactttttatcattttccaacacaaaatttctatttttattcctttatccaatgtccaaaggacaatggttagcatt 595  Q
    ||||||| | ||||||||||  | | ||||||||||||||||| |||||||||| || |||  ||||||||||||||    
T  15915884 cacttttcaccattttccaatgctatatttctatttttattcccttatccaatgccccaagtgcaatggttagcatt 15915960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 443 - 479
Target Start/End: Complemental strand, 19804617 - 19804581
Alignment:
Q  443 aatggttaaggtaaccaaaattagtagttttacattg 479  Q
    ||||||||||||||| |||||||||||||||||||||    
T  19804617 aatggttaaggtaactaaaattagtagttttacattg 19804581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 459 - 577
Target Start/End: Complemental strand, 32522816 - 32522698
Alignment:
Q  459 aaaattagtagttttacattgaaaacaacaatttataaactttttactagttgacttgaccactttttatcattttccaacacaaaatttctatttttat 558  Q
    |||| |||||||||| ||||| ||| || ||||| | || |||| |  |||||| || |||| | ||||||| || |||||| || |||||||||||| |    
T  32522816 aaaaatagtagttttgcattggaaataataattttttaaattttaaaaagttgaattcaccaatgtttatcacttcccaacaaaatatttctatttttgt 32522717  T
Q  559 tcctttatccaatgtccaa 577  Q
    ||||||| ||||| |||||    
T  32522716 tcctttaaccaatatccaa 32522698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 519 - 595
Target Start/End: Complemental strand, 16315591 - 16315515
Alignment:
Q  519 cactttttatcattttccaacacaaaatttctatttttattcctttatccaatgtccaaaggacaatggttagcatt 595  Q
    ||||||| | ||||||||||  | | |||||||||||||| || |||||| ||| ||||||| || |||||||||||    
T  16315591 cacttttcaccattttccaatgctatatttctatttttatccccttatccgatgcccaaagggcagtggttagcatt 16315515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 519 - 595
Target Start/End: Complemental strand, 35653312 - 35653236
Alignment:
Q  519 cactttttatcattttccaacacaaaatttctatttttattcctttatccaatgtccaaaggacaatggttagcatt 595  Q
    ||||||| | ||||||||||  | | |||||||||||||| || ||||||||||  | |||| ||||||||||||||    
T  35653312 cacttttcaccattttccaatgctatatttctatttttatccccttatccaatgcaccaagggcaatggttagcatt 35653236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 100; Significance: 4e-49; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 448 - 599
Target Start/End: Complemental strand, 6615007 - 6614856
Alignment:
Q  448 ttaaggtaaccaaaattagtagttttacattgaaaacaacaatttataaactttttactagttgacttgaccactttttatcattttccaacacaaaatt 547  Q
    |||||||||| |||||||||||||||||| |  |||||| |||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||    
T  6615007 ttaaggtaactaaaattagtagttttacactagaaacaataatttataaactttttacaagttgatttgaccactttttatcattttccaacacaaaatt 6614908  T
Q  548 tctatttttattcctttatccaatgtccaaaggacaatggttagcatttccc 599  Q
    ||||||||| ||||||||||||||| || |  |||||||| |||||||||||    
T  6614907 tctatttttgttcctttatccaatgccccatagacaatggatagcatttccc 6614856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 445 - 601
Target Start/End: Original strand, 22616846 - 22617000
Alignment:
Q  445 tggttaaggtaaccaaaattagtagttttacattgaaaacaacaatttataaactttttactagttgacttgaccactttttatcattttccaacacaaa 544  Q
    ||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||  |||||| ||||| ||||||||||||||||||||||  |    
T  22616846 tggttaaggtaaccaaaatgagtagttttacattggaaacaacaatttataaactttttataagttgatttgactactttttatcattttccaacac--a 22616943  T
Q  545 atttctatttttattcctttatccaatgtccaaaggacaatggttagcatttccctt 601  Q
    |||||||||||| ||  ||||||||||| || |||||||||| ||||||||||||||    
T  22616944 atttctatttttgttattttatccaatgccccaaggacaatgattagcatttccctt 22617000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 447 - 571
Target Start/End: Original strand, 31765774 - 31765898
Alignment:
Q  447 gttaaggtaaccaaaattagtagttttacattgaaaacaacaatttataaactttttactagttgacttgaccactttttatcattttccaacacaaaat 546  Q
    |||||||||| ||||||||||||||||||||||||||||| ||||  |||||||||||| |||||| ||||||| ||||||| | | ||||||||| |||    
T  31765774 gttaaggtaatcaaaattagtagttttacattgaaaacaataattcgtaaactttttacaagttgatttgaccattttttattactctccaacacagaat 31765873  T
Q  547 ttctatttttattcctttatccaat 571  Q
    ||||||||||||||| |||||||||    
T  31765874 ttctatttttattcccttatccaat 31765898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 442 - 553
Target Start/End: Original strand, 28541931 - 28542042
Alignment:
Q  442 caatggttaaggtaaccaaaattagtagttttacattgaaaacaacaatttataaactttttactagttgacttgaccactttttatcattttccaacac 541  Q
    |||||||||||| ||| |||| ||||| ||||||||||||||| |||||||  |||||||| |  |||||| || | |||||||||  | ||||||||||    
T  28541931 caatggttaaggaaacaaaaaatagtaattttacattgaaaactacaattttcaaacttttaaaaagttgaattcatcactttttactactttccaacac 28542030  T
Q  542 aaaatttctatt 553  Q
    || |||| ||||    
T  28542031 aatatttttatt 28542042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 545 - 595
Target Start/End: Complemental strand, 26572113 - 26572063
Alignment:
Q  545 atttctatttttattcctttatccaatgtccaaaggacaatggttagcatt 595  Q
    |||||||||||||| || |||||||||| || |||||||||||||||||||    
T  26572113 atttctatttttatccccttatccaatgccccaaggacaatggttagcatt 26572063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 519 - 595
Target Start/End: Original strand, 10855484 - 10855560
Alignment:
Q  519 cactttttatcattttccaacacaaaatttctatttttattcctttatccaatgtccaaaggacaatggttagcatt 595  Q
    ||||||| |||||||| ||| |  | |||||||||||||| || ||||| |||| || |||||||||||||||||||    
T  10855484 cacttttcatcatttttcaatattatatttctatttttatccccttatcaaatgccccaaggacaatggttagcatt 10855560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 519 - 595
Target Start/End: Complemental strand, 29692398 - 29692322
Alignment:
Q  519 cactttttatcattttccaacacaaaatttctatttttattcctttatccaatgtccaaaggacaatggttagcatt 595  Q
    ||||||| | |||||| ||| || | |||||||||||||| | ||||||||||| || |||| ||||| ||||||||    
T  29692398 cacttttcaccatttttcaatactatatttctatttttatccatttatccaatgccccaagggcaatgattagcatt 29692322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 92; Significance: 2e-44; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 443 - 590
Target Start/End: Complemental strand, 10636100 - 10635953
Alignment:
Q  443 aatggttaaggtaaccaaaattagtagttttacattgaaaacaacaatttataaactttttactagttgacttgaccactttttatcattttccaacaca 542  Q
    |||||||||||||| |||||||||||||||||||||| |||||| |||| ||||||||||||  |||| ||||| | ||||||||||||||| |||||||    
T  10636100 aatggttaaggtaatcaaaattagtagttttacattggaaacaataattaataaactttttataagttaacttggctactttttatcatttttcaacaca 10636001  T
Q  543 aaatttctatttttattcctttatccaatgtccaaaggacaatggtta 590  Q
    |||||||||||||| ||| ||||||||||| || ||||||||||||||    
T  10636000 aaatttctatttttgttcatttatccaatgccccaaggacaatggtta 10635953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 442 - 572
Target Start/End: Original strand, 24286471 - 24286601
Alignment:
Q  442 caatggttaaggtaaccaaaattagtagttttacattgaaaacaacaatttataaactttttactagttgacttgaccactttttatcattttccaacac 541  Q
    ||||||||| ||||||||||||||||||||||| |||  |||||| ||||| ||||| |||||| |||||||||||||||||||||||| ||||||||||    
T  24286471 caatggttacggtaaccaaaattagtagttttatattagaaacaataatttctaaacattttacaagttgacttgaccactttttatcactttccaacac 24286570  T
Q  542 aaaatttctatttttattcctttatccaatg 572  Q
    ||||||||||||||| ||||| |||||||||    
T  24286571 aaaatttctatttttgttcctctatccaatg 24286601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 443 - 601
Target Start/End: Complemental strand, 36055115 - 36054957
Alignment:
Q  443 aatggttaaggtaaccaaaattagtagttttacattgaaaacaacaatttataaactttttactagttgacttgaccactttttatcattttccaacaca 542  Q
    ||||||||| ||||||||||||||||| ||||||||  |||||||||||| | |||||||||| |||||| ||||||||||||||||| |||||||||||    
T  36055115 aatggttaaagtaaccaaaattagtagctttacattagaaacaacaatttgttaactttttacaagttgatttgaccactttttatcactttccaacaca 36055016  T
Q  543 aaatttctatttttattcctttatccaatgtccaaaggacaatggttagcatttccctt 601  Q
    |||||| ||||||| ||||||||||||||| || || |||| |  ||||||||| ||||    
T  36055015 aaatttttatttttgttcctttatccaatgccccaaagacactctttagcattttcctt 36054957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 447 - 580
Target Start/End: Original strand, 40451890 - 40452023
Alignment:
Q  447 gttaaggtaaccaaaattagtagttttacattgaaaacaacaatttataaactttttactagttgacttgaccactttttatcattttccaacacaaaat 546  Q
    |||||| ||| |||||||||||||||||  ||| ||||||||||||||||| ||||||| |||||| ||||  ||||||||||| |||||||||||||||    
T  40451890 gttaagataatcaaaattagtagttttaagttggaaacaacaatttataaattttttacaagttgatttgattactttttatcactttccaacacaaaat 40451989  T
Q  547 ttctatttttattcctttatccaatgtccaaagg 580  Q
    ||| |||||| ||||||||||||||| |||||||    
T  40451990 ttccatttttgttcctttatccaatgcccaaagg 40452023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 442 - 596
Target Start/End: Original strand, 44159316 - 44159470
Alignment:
Q  442 caatggttaaggtaaccaaaattagtagttttacattgaaaacaacaatttataaactttttactagttgacttgaccactttttatcattttccaacac 541  Q
    ||||||||||| |||| ||||||| ||| |||||||||  || ||||||||||||| ||||||| | ||   ||||| | ||||||||||||||||||||    
T  44159316 caatggttaagataactaaaattaatagctttacattgggaataacaatttataaattttttacaaattactttgactaatttttatcattttccaacac 44159415  T
Q  542 aaaatttctatttttattcctttatccaatgtccaaaggacaatggttagcattt 596  Q
    ||||||| ||||||| || ||||||||||||||| |||| |||||||||||||||    
T  44159416 aaaatttttatttttgttactttatccaatgtcctaagggcaatggttagcattt 44159470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 447 - 567
Target Start/End: Original strand, 31452052 - 31452171
Alignment:
Q  447 gttaaggtaaccaaaattagtagttttacattgaaaacaacaatttataaactttttactagttgacttgaccactttttatcattttccaacacaaaat 546  Q
    ||||||||||||||||||| ||| ||||||||  |||||||||||| |||| ||||| | |||||| |||||||||||| |||||||||||||||| |||    
T  31452052 gttaaggtaaccaaaattaatagctttacattagaaacaacaatttgtaaatttttt-caagttgatttgaccacttttcatcattttccaacacataat 31452150  T
Q  547 ttctatttttattcctttatc 567  Q
    |||||||||| ||| ||||||    
T  31452151 ttctatttttgttcttttatc 31452171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 447 - 572
Target Start/End: Original strand, 28280397 - 28280522
Alignment:
Q  447 gttaaggtaaccaaaattagtagttttacattgaaaacaacaatttataaactttttactagttgacttgaccactttttatcattttccaacacaaaat 546  Q
    |||||||||| |||||||||| | |||| ||| |||||||| ||||  ||| ||| ||  ||||||||||||||||||||||||||||||||||||| ||    
T  28280397 gttaaggtaatcaaaattagttgctttatattaaaaacaacgattttaaaattttatataagttgacttgaccactttttatcattttccaacacaatat 28280496  T
Q  547 ttctatttttattcctttatccaatg 572  Q
    || |||||||||||  ||||||||||    
T  28280497 ttatatttttattctcttatccaatg 28280522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 545 - 595
Target Start/End: Original strand, 45338082 - 45338132
Alignment:
Q  545 atttctatttttattcctttatccaatgtccaaaggacaatggttagcatt 595  Q
    |||||||||||||| || |||||||||| ||||||||||||||||||||||    
T  45338082 atttctatttttatccccttatccaatgcccaaaggacaatggttagcatt 45338132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 510 - 559
Target Start/End: Complemental strand, 3744368 - 3744319
Alignment:
Q  510 tgacttgaccactttttatcattttccaacacaaaatttctatttttatt 559  Q
    ||||||||| ||||||||||||||| ||||||||||||||||||| ||||    
T  3744368 tgacttgactactttttatcatttttcaacacaaaatttctatttatatt 3744319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 522 - 595
Target Start/End: Original strand, 26672845 - 26672917
Alignment:
Q  522 tttttatcattttccaacacaaaatttctatttttattcctttatccaatgtccaaaggacaatggttagcatt 595  Q
    |||||||||||||||||  | | |||||||||||||| ||||||||||||  || |||||||||||||||||||    
T  26672845 tttttatcattttccaatgctatatttctatttttatccctttatccaat-acccaaggacaatggttagcatt 26672917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 530 - 595
Target Start/End: Complemental strand, 19389356 - 19389291
Alignment:
Q  530 attttccaacacaaaatttctatttttattcctttatccaatgtccaaaggacaatggttagcatt 595  Q
    ||||||||| || | |||||||||||||| || |||||||||| || |||| ||||||||||||||    
T  19389356 attttccaatactatatttctatttttatccccttatccaatgccccaagggcaatggttagcatt 19389291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 519 - 601
Target Start/End: Original strand, 7532837 - 7532919
Alignment:
Q  519 cactttttatcattttccaacacaaaatttctatttttattcctttatccaatgtccaaaggacaatggttagcatttccctt 601  Q
    ||||||| | |||||||||| |||| |||||||||||||| || ||| |||||| || ||| ||| |  ||||||||||||||    
T  7532837 cacttttcaccattttccaatacaatatttctatttttatccccttaaccaatgccctaagaacactctttagcatttccctt 7532919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 442 - 549
Target Start/End: Original strand, 73413 - 73521
Alignment:
Q  442 caatggttaaggtaaccaaaattagtagttttacattgaaaacaacaatttat-aaactttttactagttgacttgaccactttttatcattttccaaca 540  Q
    |||||||||||  ||| |||| ||||||||||||||||||||  | ||||| | |||||||| |  |||||| || |  ||||||||||| |||||||||    
T  73413 caatggttaagaaaactaaaaatagtagttttacattgaaaattataatttttcaaacttttaaaaagttgaattcataactttttatcactttccaaca 73512  T
Q  541 caaaatttc 549  Q
    ||| |||||    
T  73513 caatatttc 73521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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