View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21163_low_50 (Length: 304)

Name: NF21163_low_50
Description: NF21163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21163_low_50
NF21163_low_50
[»] chr8 (24 HSPs)
chr8 (7-293)||(32979589-32979879)
chr8 (31-293)||(38628721-38628987)
chr8 (82-293)||(22320917-22321132)
chr8 (8-124)||(26652291-26652407)
chr8 (161-293)||(39779238-39779370)
chr8 (6-89)||(39778914-39778997)
chr8 (8-86)||(39779817-39779895)
chr8 (1-77)||(17725639-17725715)
chr8 (1-58)||(9197824-9197881)
chr8 (8-84)||(27442119-27442195)
chr8 (8-58)||(3165126-3165176)
chr8 (8-90)||(38576274-38576356)
chr8 (8-81)||(41974638-41974711)
chr8 (1-61)||(37064807-37064867)
chr8 (1-56)||(37732817-37732872)
chr8 (8-58)||(9197093-9197143)
chr8 (4-58)||(31602010-31602064)
chr8 (14-58)||(183950-183994)
chr8 (6-57)||(8373698-8373749)
chr8 (8-58)||(3417355-3417405)
chr8 (8-58)||(31642091-31642141)
chr8 (8-57)||(3043970-3044019)
chr8 (13-58)||(27441469-27441514)
chr8 (30-106)||(37733609-37733685)
[»] chr7 (36 HSPs)
chr7 (1-256)||(45099128-45099383)
chr7 (1-106)||(46428774-46428879)
chr7 (1-90)||(25342487-25342576)
chr7 (1-81)||(37949595-37949675)
chr7 (1-87)||(7668472-7668558)
chr7 (3-89)||(25343213-25343299)
chr7 (13-107)||(31278110-31278204)
chr7 (1-66)||(30660583-30660648)
chr7 (8-63)||(15305240-15305295)
chr7 (1-87)||(18977746-18977831)
chr7 (1-87)||(21496959-21497045)
chr7 (8-90)||(25343300-25343382)
chr7 (12-81)||(30661437-30661506)
chr7 (1-57)||(37706418-37706474)
chr7 (8-84)||(38225297-38225373)
chr7 (8-88)||(46428184-46428263)
chr7 (7-58)||(26636099-26636150)
chr7 (28-103)||(31277440-31277515)
chr7 (8-67)||(37395495-37395554)
chr7 (8-58)||(25599019-25599069)
chr7 (8-58)||(27948443-27948493)
chr7 (8-66)||(37950464-37950522)
chr7 (13-58)||(1417610-1417655)
chr7 (13-58)||(3029203-3029248)
chr7 (13-58)||(38225980-38226025)
chr7 (8-57)||(45099899-45099948)
chr7 (13-81)||(24389598-24389666)
chr7 (49-89)||(37706296-37706336)
chr7 (21-81)||(48670909-48670969)
chr7 (8-58)||(3772531-3772581)
chr7 (12-58)||(13785598-13785644)
chr7 (12-57)||(19068401-19068446)
chr7 (9-58)||(26636865-26636914)
chr7 (8-89)||(36378809-36378890)
chr7 (9-57)||(3903345-3903393)
chr7 (14-58)||(24453731-24453775)
[»] chr1 (36 HSPs)
chr1 (1-293)||(12761266-12761558)
chr1 (1-159)||(37852513-37852671)
chr1 (8-159)||(12760773-12760924)
chr1 (13-107)||(17172618-17172712)
chr1 (1-103)||(17171921-17172023)
chr1 (7-89)||(25671166-25671248)
chr1 (1-58)||(25469091-25469148)
chr1 (1-58)||(13262823-13262880)
chr1 (1-58)||(19171768-19171825)
chr1 (1-74)||(30932784-30932857)
chr1 (12-81)||(34309212-34309281)
chr1 (8-58)||(7406242-7406292)
chr1 (8-58)||(8987787-8987837)
chr1 (5-87)||(9778221-9778302)
chr1 (8-66)||(49680808-49680866)
chr1 (10-59)||(7407007-7407056)
chr1 (1-58)||(28181523-28181580)
chr1 (8-57)||(37853141-37853190)
chr1 (1-86)||(46909339-46909424)
chr1 (6-58)||(13263521-13263573)
chr1 (19-75)||(25733168-25733224)
chr1 (12-67)||(7559195-7559250)
chr1 (7-58)||(30663354-30663405)
chr1 (7-58)||(50271788-50271839)
chr1 (8-58)||(19172580-19172630)
chr1 (7-57)||(34308469-34308519)
chr1 (8-58)||(36390372-36390422)
chr1 (13-58)||(4433852-4433897)
chr1 (20-81)||(23026592-23026653)
chr1 (12-57)||(27256718-27256763)
chr1 (21-58)||(30931898-30931935)
chr1 (1-57)||(36689071-36689127)
chr1 (1-57)||(36705171-36705227)
chr1 (1-57)||(45818011-45818067)
chr1 (30-58)||(47968650-47968678)
chr1 (49-89)||(51661331-51661371)
[»] chr4 (37 HSPs)
chr4 (8-205)||(598523-598724)
chr4 (161-293)||(44792044-44792176)
chr4 (161-256)||(290434-290529)
chr4 (191-293)||(290526-290628)
chr4 (8-86)||(44792613-44792691)
chr4 (1-86)||(44791715-44791800)
chr4 (13-107)||(3654471-3654565)
chr4 (8-85)||(31329695-31329772)
chr4 (1-83)||(47688459-47688541)
chr4 (11-89)||(7842503-7842581)
chr4 (1-86)||(1465311-1465396)
chr4 (8-81)||(7841542-7841615)
chr4 (1-58)||(30573714-30573771)
chr4 (1-57)||(53772798-53772854)
chr4 (8-67)||(2446157-2446216)
chr4 (7-58)||(24374786-24374837)
chr4 (1-72)||(44469483-44469554)
chr4 (1-58)||(7841784-7841839)
chr4 (8-54)||(16903677-16903723)
chr4 (8-58)||(26147037-26147087)
chr4 (19-89)||(43146622-43146692)
chr4 (8-58)||(53773591-53773641)
chr4 (5-58)||(9365164-9365217)
chr4 (8-81)||(47687907-47687980)
chr4 (7-88)||(47785775-47785855)
chr4 (19-64)||(52871307-52871352)
chr4 (14-58)||(16903648-16903692)
chr4 (8-64)||(32089612-32089668)
chr4 (8-56)||(40495093-40495141)
chr4 (7-57)||(2444369-2444419)
chr4 (8-58)||(20774185-20774235)
chr4 (6-72)||(42882672-42882738)
chr4 (8-58)||(53148616-53148666)
chr4 (8-89)||(24158794-24158875)
chr4 (13-58)||(26159626-26159671)
chr4 (21-90)||(53733704-53733773)
chr4 (49-89)||(42419684-42419724)
[»] chr3 (34 HSPs)
chr3 (1-147)||(33277420-33277566)
chr3 (8-147)||(10847289-10847428)
chr3 (8-159)||(44029674-44029824)
chr3 (66-293)||(53629318-53629531)
chr3 (7-106)||(14871150-14871249)
chr3 (1-87)||(55373682-55373768)
chr3 (1-85)||(41458024-41458107)
chr3 (1-58)||(20213536-20213593)
chr3 (10-106)||(37520518-37520614)
chr3 (3-77)||(46150715-46150789)
chr3 (8-58)||(48764475-48764525)
chr3 (8-105)||(11203159-11203256)
chr3 (7-107)||(959832-959932)
chr3 (19-90)||(981676-981747)
chr3 (8-67)||(37988214-37988273)
chr3 (7-105)||(960524-960622)
chr3 (8-58)||(13477055-13477105)
chr3 (8-58)||(20212978-20213028)
chr3 (7-61)||(48413316-48413370)
chr3 (8-58)||(48648201-48648251)
chr3 (19-89)||(51826546-51826616)
chr3 (5-106)||(37987228-37987329)
chr3 (12-67)||(22925428-22925483)
chr3 (12-58)||(21727534-21727580)
chr3 (8-58)||(27082774-27082824)
chr3 (8-58)||(52266458-52266508)
chr3 (9-58)||(265103-265152)
chr3 (21-58)||(13477783-13477820)
chr3 (13-58)||(17603171-17603216)
chr3 (16-57)||(17605712-17605753)
chr3 (36-89)||(40932705-40932758)
chr3 (10-87)||(48649149-48649226)
chr3 (13-58)||(51469284-51469329)
chr3 (8-45)||(52605501-52605538)
[»] chr6 (18 HSPs)
chr6 (8-87)||(8489255-8489334)
chr6 (1-58)||(26529517-26529574)
chr6 (7-83)||(3623171-3623247)
chr6 (2-58)||(19311831-19311887)
chr6 (1-58)||(10171970-10172027)
chr6 (12-77)||(19323752-19323817)
chr6 (7-67)||(9441233-9441293)
chr6 (1-89)||(33436247-33436335)
chr6 (2-57)||(1366959-1367014)
chr6 (19-89)||(9441953-9442023)
chr6 (8-58)||(10171273-10171323)
chr6 (19-66)||(19322991-19323038)
chr6 (8-67)||(25060813-25060872)
chr6 (19-57)||(9442066-9442104)
chr6 (8-66)||(18227729-18227786)
chr6 (8-58)||(26528820-26528870)
chr6 (8-57)||(505534-505583)
chr6 (8-81)||(3623728-3623801)
[»] chr2 (30 HSPs)
chr2 (8-87)||(11751044-11751123)
chr2 (1-89)||(1296370-1296458)
chr2 (13-107)||(27178600-27178694)
chr2 (8-83)||(18174649-18174724)
chr2 (13-103)||(27177915-27178005)
chr2 (1-58)||(8541742-8541799)
chr2 (8-89)||(9276303-9276384)
chr2 (8-84)||(22301192-22301268)
chr2 (10-86)||(34812832-34812908)
chr2 (7-58)||(22560572-22560623)
chr2 (8-90)||(1297095-1297177)
chr2 (8-90)||(9275584-9275666)
chr2 (12-58)||(38361069-38361115)
chr2 (12-72)||(9540333-9540393)
chr2 (7-81)||(18174096-18174170)
chr2 (8-58)||(26752025-26752075)
chr2 (1-58)||(11750248-11750305)
chr2 (13-58)||(22301874-22301919)
chr2 (1-74)||(24933827-24933900)
chr2 (1-57)||(36237622-36237678)
chr2 (8-74)||(12725603-12725669)
chr2 (8-58)||(18820430-18820480)
chr2 (20-58)||(29559424-29559462)
chr2 (12-58)||(29719448-29719494)
chr2 (1-58)||(18821235-18821292)
chr2 (8-89)||(24121263-24121344)
chr2 (1-58)||(42182619-42182676)
chr2 (49-89)||(863247-863287)
chr2 (2-58)||(12724733-12724789)
chr2 (14-58)||(26752727-26752771)
[»] chr5 (30 HSPs)
chr5 (1-89)||(29087915-29088003)
chr5 (1-72)||(4084870-4084941)
chr5 (8-83)||(17071221-17071296)
chr5 (13-83)||(34600263-34600333)
chr5 (1-58)||(29046019-29046076)
chr5 (1-57)||(234691-234747)
chr5 (1-57)||(14478911-14478967)
chr5 (1-81)||(17071775-17071855)
chr5 (13-104)||(7632097-7632188)
chr5 (7-105)||(13306226-13306324)
chr5 (6-72)||(18617435-18617501)
chr5 (8-57)||(19360481-19360530)
chr5 (14-74)||(10554550-10554610)
chr5 (7-74)||(6476779-6476846)
chr5 (14-89)||(36038698-36038773)
chr5 (8-58)||(19128767-19128817)
chr5 (11-81)||(34709018-34709088)
chr5 (5-67)||(43510226-43510288)
chr5 (8-57)||(237826-237875)
chr5 (13-58)||(1554087-1554132)
chr5 (8-57)||(19359701-19359750)
chr5 (14-58)||(1283504-1283548)
chr5 (8-90)||(235589-235671)
chr5 (22-84)||(1553419-1553481)
chr5 (8-58)||(28705162-28705212)
chr5 (8-58)||(28705883-28705933)
chr5 (7-81)||(34600812-34600886)
chr5 (1-52)||(23995298-23995346)
chr5 (49-89)||(3259782-3259822)
chr5 (49-89)||(4737777-4737817)
[»] scaffold0012 (1 HSPs)
scaffold0012 (8-72)||(180839-180902)
[»] scaffold0176 (1 HSPs)
scaffold0176 (8-66)||(26589-26647)
[»] scaffold0002 (1 HSPs)
scaffold0002 (1-58)||(428906-428963)
[»] scaffold0085 (2 HSPs)
scaffold0085 (1-57)||(22076-22132)
scaffold0085 (21-58)||(15863-15900)
[»] scaffold0164 (1 HSPs)
scaffold0164 (1-58)||(11661-11718)
[»] scaffold0418 (1 HSPs)
scaffold0418 (8-56)||(6891-6939)
[»] scaffold1207 (1 HSPs)
scaffold1207 (20-58)||(1596-1634)
[»] scaffold0086 (1 HSPs)
scaffold0086 (8-58)||(8296-8346)
[»] scaffold1213 (1 HSPs)
scaffold1213 (8-61)||(1893-1946)
[»] scaffold0504 (1 HSPs)
scaffold0504 (8-57)||(5385-5434)
[»] scaffold0096 (1 HSPs)
scaffold0096 (8-57)||(39893-39942)


Alignment Details
Target: chr8 (Bit Score: 242; Significance: 1e-134; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 7 - 293
Target Start/End: Complemental strand, 32979879 - 32979589
Alignment:
Q  7 agagtcaggattcgttgacatcaggtgtcaacgaattcgttaacaccaaatcacatccattgatttaatttaatccaaaggctcttgttaattcacttaa 106  Q
    ||||||||||| |||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32979879 agagtcaggatccgttgacaccaggtgtcaacgaatttgttaacaccaaatcacatccattgatttaatttaatccaaaggctcttgttaattcacttaa 32979780  T
Q  107 caatgcatgtgaaccatcatctacatggtcttttattccatggttctccatcttcc----gtgcttgcacattctcaaagatttcaccaatctaatgtgc 202  Q
    ||||||||||||||||||| ||||||| |||||||||| |||||| |||||||||     ||||||||||||||||||||||||||||||||||||||||    
T  32979779 caatgcatgtgaaccatcacctacatgatcttttattctatggttttccatcttcttcatgtgcttgcacattctcaaagatttcaccaatctaatgtgc 32979680  T
Q  203 tgcttatgcaaatcaaaatcccactattctattatggtgtagattaattgaatcaaaaattaaaatataaatattgttaacctaatttcat 293  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32979679 tgcttatgcaaatcaaaatcccactattctattatggtgtagattaattgaatcaaaaattaaaatataaatattgttaacctaatttcat 32979589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 31 - 293
Target Start/End: Complemental strand, 38628987 - 38628721
Alignment:
Q  31 gtgtcaacgaattcgttaacaccaaatcacatccattgatttaatttaatccaaaggctcttgttaattcacttaacaatgcatgtgaaccatcatctac 130  Q
    ||||||||||||||||||||  |||||||||||||| ||||||||||||| |||| |||||||||||||||||||| |||| |||||||  |||| ||||    
T  38628987 gtgtcaacgaattcgttaacgtcaaatcacatccatcgatttaatttaattcaaaagctcttgttaattcacttaataatgtatgtgaattatcacctac 38628888  T
Q  131 atggtcttttattccatggttctccatcttcc----gtgcttgcacattctcaaagatttcaccaatctaatgtgctgcttatgcaaatcaaaatcccac 226  Q
    ||| ||||||||||||||||| |||||||||     |||||||||||||||||||||||||||||||| | ||||||||||||| |||||||||||||||    
T  38628887 atgatcttttattccatggttttccatcttcttcctgtgcttgcacattctcaaagatttcaccaatcaattgtgctgcttatgaaaatcaaaatcccac 38628788  T
Q  227 tattctattatggtgtagattaattgaatcaaaaattaaaatataaatattgttaacctaatttcat 293  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38628787 tattctattatagtgtagattaattgaatcaaaaattaaaatataaatattgttaacctaatttcat 38628721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 82 - 293
Target Start/End: Complemental strand, 22321132 - 22320917
Alignment:
Q  82 caaaggctcttgttaattcacttaacaatgcatgtgaaccatcatctacatggtcttttattccatggttctccatcttcc----gtgcttgcacattct 177  Q
    ||||||||||||||||||||||||| |||||||||||||||||| ||||||| |||||||||| |||||| | |||||||     |||||||||||||||    
T  22321132 caaaggctcttgttaattcacttaataatgcatgtgaaccatcacctacatgatcttttattctatggtttttcatcttcttcatgtgcttgcacattct 22321033  T
Q  178 caaagatttcaccaatctaatgtgctgcttatgcaaatcaaaatcccactattctattatggtgtagattaattgaatcaaaaattaaaatataaatatt 277  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  22321032 caaagatttcacaaatctaatgtgctgcttatgcaaatcaaaatcccactattctattgtggtgtagattaattgaatcaaaaattaaaatataaatatt 22320933  T
Q  278 gttaacctaatttcat 293  Q
    ||||||||||||||||    
T  22320932 gttaacctaatttcat 22320917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 8 - 124
Target Start/End: Original strand, 26652291 - 26652407
Alignment:
Q  8 gagtcaggattcgttgacatcaggtgtcaacgaattcgttaacaccaaatcacatccattgatttaatttaatccaaaggctcttgttaattcacttaac 107  Q
    |||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||    
T  26652291 gagtcaggatccgttgacaccaggtgtcaacgaattcgttaacaccaaatcacattcattgattcaatttaatccaaaggctcttgttaattcacttaac 26652390  T
Q  108 aatgcatgtgaaccatc 124  Q
    |||||||||||||||||    
T  26652391 aatgcatgtgaaccatc 26652407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 161 - 293
Target Start/End: Original strand, 39779238 - 39779370
Alignment:
Q  161 ccgtgcttgcacattctcaaagatttcaccaatctaatgtgctgcttatgcaaatcaaaatcccactattctattatggtgtagattaattgaatcaaaa 260  Q
    ||||| |||||||| |||||| || ||||||||||||||||||||| | | |||| ||| ||||||||||| ||| |||||||||| ||||||||||||     
T  39779238 ccgtgtttgcacatgctcaaacatgtcaccaatctaatgtgctgctcaagaaaatgaaagtcccactattccattgtggtgtagatcaattgaatcaaag 39779337  T
Q  261 attaaaatataaatattgttaacctaatttcat 293  Q
    |||| |||||||||||  |||||||||||||||    
T  39779338 attagaatataaatatatttaacctaatttcat 39779370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 6 - 89
Target Start/End: Original strand, 39778914 - 39778997
Alignment:
Q  6 tagagtcaggattcgttgacatcaggtgtcaacgaattcgttaacaccaaatcacatccattgatttaatttaatccaaaggct 89  Q
    |||||||||||| | |||||| ||||||||||||||||||||||||||||||||||||| ||||||| |||| ||| |||||||    
T  39778914 tagagtcaggatccattgacaccaggtgtcaacgaattcgttaacaccaaatcacatccgttgattttatttgatctaaaggct 39778997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 8 - 86
Target Start/End: Complemental strand, 39779895 - 39779817
Alignment:
Q  8 gagtcaggattcgttgacatcaggtgtcaacgaattcgttaacaccaaatcacatccattgatttaatttaatccaaag 86  Q
    |||||||||| | |||||| ||||||||||||||||||||||||||||||||||||| ||||||| |||| ||||||||    
T  39779895 gagtcaggatccattgacaccaggtgtcaacgaattcgttaacaccaaatcacatccgttgattttatttgatccaaag 39779817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 17725715 - 17725639
Alignment:
Q  1 atatatagagtcaggattcgttgacatcaggtgtcaacgaattcgttaacaccaaatcacatccattgatttaattt 77  Q
    |||||||||| |||||| |||||||| |||||||||||||||||||| ||||||||||  ||||||| |||| ||||    
T  17725715 atatatagagacaggatccgttgacagcaggtgtcaacgaattcgttgacaccaaatcctatccatttattttattt 17725639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 9197881 - 9197824
Alignment:
Q  1 atatatagagtcaggattcgttgacatcaggtgtcaacgaattcgttaacaccaaatc 58  Q
    ||||||||||||||||| |||||||| || ||||||||||||||||| ||||||||||    
T  9197881 atatatagagtcaggatccgttgacaccaagtgtcaacgaattcgttgacaccaaatc 9197824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 8 - 84
Target Start/End: Complemental strand, 27442195 - 27442119
Alignment:
Q  8 gagtcaggattcgttgacatcaggtgtcaacgaattcgttaacaccaaatcacatccattgatttaatttaatccaa 84  Q
    |||||||||| |||||||| ||||||||||||||| |||||||||||||||| | ||||| |||   ||||||||||    
T  27442195 gagtcaggatccgttgacaccaggtgtcaacgaatccgttaacaccaaatcatagccatttattatgtttaatccaa 27442119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 8 - 58
Target Start/End: Complemental strand, 3165176 - 3165126
Alignment:
Q  8 gagtcaggattcgttgacatcaggtgtcaacgaattcgttaacaccaaatc 58  Q
    |||||||||| ||||||||||||||||||||| ||||||| ||||||||||    
T  3165176 gagtcaggatccgttgacatcaggtgtcaacggattcgttgacaccaaatc 3165126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 8 - 90
Target Start/End: Complemental strand, 38576356 - 38576274
Alignment:
Q  8 gagtcaggattcgttgacatcaggtgtcaacgaattcgttaacaccaaatcacatccattgatttaatttaatccaaaggctc 90  Q
    |||| ||||| |||||||| |||||||||||| ||||||| |||||||||| || ||||  |||| |||||||| ||||||||    
T  38576356 gagttaggatccgttgacaccaggtgtcaacggattcgttgacaccaaatctcaaccatcaattttatttaatcaaaaggctc 38576274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 8 - 81
Target Start/End: Original strand, 41974638 - 41974711
Alignment:
Q  8 gagtcaggattcgttgacatcaggtgtcaacgaattcgttaacaccaaatcacatccattgatttaatttaatc 81  Q
    |||||||||| |||||||| |||||||||||| ||||||| |||||||||| || ||||| |||  ||||||||    
T  41974638 gagtcaggatccgttgacaccaggtgtcaacggattcgttgacaccaaatctcagccattcattatatttaatc 41974711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 37064807 - 37064867
Alignment:
Q  1 atatatagagtcaggattcgttgacatcaggtgtcaacgaattcgttaacaccaaatcaca 61  Q
    ||||||| |||||||||  ||||||| ||||||||||||||||| || |||||||||||||    
T  37064807 atatatatagtcaggatctgttgacaccaggtgtcaacgaattcattgacaccaaatcaca 37064867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 37732817 - 37732872
Alignment:
Q  1 atatatagagtcaggattcgttgacatcaggtgtcaacgaattcgttaacaccaaa 56  Q
    ||||||||||||||||| |||||||| | |||||||||| ||||||| ||||||||    
T  37732817 atatatagagtcaggatccgttgacacctggtgtcaacggattcgttgacaccaaa 37732872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 58
Target Start/End: Original strand, 9197093 - 9197143
Alignment:
Q  8 gagtcaggattcgttgacatcaggtgtcaacgaattcgttaacaccaaatc 58  Q
    ||||||| || |||||||| |||||||||||||||||||| ||||||||||    
T  9197093 gagtcagaatccgttgacaccaggtgtcaacgaattcgttgacaccaaatc 9197143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 4 - 58
Target Start/End: Original strand, 31602010 - 31602064
Alignment:
Q  4 tatagagtcaggattcgttgacatcaggtgtcaacgaattcgttaacaccaaatc 58  Q
    |||||||| |||||  ||||||| |||||||||||||||||||| ||||||||||    
T  31602010 tatagagttaggatcggttgacaccaggtgtcaacgaattcgttgacaccaaatc 31602064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 58
Target Start/End: Complemental strand, 183994 - 183950
Alignment:
Q  14 ggattcgttgacatcaggtgtcaacgaattcgttaacaccaaatc 58  Q
    ||||||||||| | ||| |||||||||||||||||||||||||||    
T  183994 ggattcgttgataccagatgtcaacgaattcgttaacaccaaatc 183950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 6 - 57
Target Start/End: Complemental strand, 8373749 - 8373698
Alignment:
Q  6 tagagtcaggattcgttgacatcaggtgtcaacgaattcgttaacaccaaat 57  Q
    |||||||||||| |||||||| || ||||||||| ||||||| |||||||||    
T  8373749 tagagtcaggatccgttgacaccaagtgtcaacggattcgttgacaccaaat 8373698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 58
Target Start/End: Original strand, 3417355 - 3417405
Alignment:
Q  8 gagtcaggattcgttgacatcaggtgtcaacgaattcgttaacaccaaatc 58  Q
    ||||||||||  ||||||||| ||||| |||||||||||| ||||||||||    
T  3417355 gagtcaggatctgttgacatctggtgttaacgaattcgttgacaccaaatc 3417405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 58
Target Start/End: Complemental strand, 31642141 - 31642091
Alignment:
Q  8 gagtcaggattcgttgacatcaggtgtcaacgaattcgttaacaccaaatc 58  Q
    |||||||||| | |||||| ||| |||||||||||||||| ||||||||||    
T  31642141 gagtcaggatccattgacaccagatgtcaacgaattcgttgacaccaaatc 31642091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 57
Target Start/End: Complemental strand, 3044019 - 3043970
Alignment:
Q  8 gagtcaggattcgttgacatcaggtgtcaacgaattcgttaacaccaaat 57  Q
    |||| ||||| ||| |||| |||||||||||||||||||| |||||||||    
T  3044019 gagttaggatccgtcgacaccaggtgtcaacgaattcgttgacaccaaat 3043970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 58
Target Start/End: Original strand, 27441469 - 27441514
Alignment:
Q  13 aggattcgttgacatcaggtgtcaacgaattcgttaacaccaaatc 58  Q
    ||||| |||||||| |||||||||||||||||||| ||| ||||||    
T  27441469 aggatccgttgacaccaggtgtcaacgaattcgttgacatcaaatc 27441514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 106
Target Start/End: Original strand, 37733609 - 37733685
Alignment:
Q  30 ggtgtcaacgaattcgttaacaccaaatcacatccattgatttaatttaatccaaaggctcttgttaattcacttaa 106  Q
    ||||||||||||  |||| |||||||||| |||||||| | || |||||||| ||||||| ||  | ||||||||||    
T  37733609 ggtgtcaacgaacccgttgacaccaaatctcatccattaaattgatttaatctaaaggctattaattattcacttaa 37733685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 228; Significance: 1e-126; HSPs: 36)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 45099128 - 45099383
Alignment:
Q  1 atatatagagtcaggattcgttgacatcaggtgtcaacgaattcgttaacaccaaatcacatccattgatttaatttaatccaaaggctcttgttaattc 100  Q
    ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45099128 atatatatagtcaggatccgttgacatcaggtgtcaacgaattcgttaacaccaaatcacatccattgatttaatttaatccaaaggctcttgttaattc 45099227  T
Q  101 acttaacaatgcatgtgaaccatcatctacatggtcttttattccatggttctccatcttccgtgcttgcacattctcaaagatttcaccaatctaatgt 200  Q
    ||||||||||||| ||||||||||| ||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||    
T  45099228 acttaacaatgcacgtgaaccatcacctacatgatcttttattccatggttttccatcttccgtgcttgcacattctcaaaaatttcaccaatctaatgt 45099327  T
Q  201 gctgcttatgcaaatcaaaatcccactattctattatggtgtagattaattgaatc 256  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45099328 gctgcttatgcaaatcaaaatcccactattctattatggtgtagattaattgaatc 45099383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 46428879 - 46428774
Alignment:
Q  1 atatatagagtcaggattcgttgacatcaggtgtcaacgaattcgttaacaccaaatcacatccattgatttaatttaatccaaaggctcttgttaattc 100  Q
    ||||||||||||||||| |||||||| |||||||||||||||||||| ||| |||||| |||||||| | ||  ||||||| ||||||| ||  | ||||    
T  46428879 atatatagagtcaggatccgttgacaccaggtgtcaacgaattcgttgacatcaaatctcatccattaaattggtttaatctaaaggctattaattattc 46428780  T
Q  101 acttaa 106  Q
    ||||||    
T  46428779 acttaa 46428774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 25342487 - 25342576
Alignment:
Q  1 atatatagagtcaggattcgttgacatcaggtgtcaacgaattcgttaacaccaaatcacatccattgatttaatttaatccaaaggctc 90  Q
    ||||||||||| ||||| |||||||| |||||||||||| ||||||| |||||||||| || ||||  |||| |||||||| ||||||||    
T  25342487 atatatagagttaggatccgttgacaccaggtgtcaacggattcgttgacaccaaatctcaaccatcaattttatttaatcaaaaggctc 25342576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 37949595 - 37949675
Alignment:
Q  1 atatatagagtcaggattcgttgacatcaggtgtcaacgaattcgttaacaccaaatcacatccattgatttaatttaatc 81  Q
    |||||||||| |||||| |||||||| |||||||||||| ||||||| |||||||||| || || ||||||| ||||||||    
T  37949595 atatatagagacaggatccgttgacaccaggtgtcaacggattcgttgacaccaaatctcaaccgttgattttatttaatc 37949675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 7668472 - 7668558
Alignment:
Q  1 atatatagagtcaggattcgttgacatcaggtgtcaacgaattcgttaacaccaaatcacatccattgatttaatttaatccaaagg 87  Q
    ||||||| ||||||||| |||||||| |||||||||||| ||||||| |||||||||| || ||||| |||||| || ||| |||||    
T  7668472 atatatatagtcaggatccgttgacaccaggtgtcaacggattcgttgacaccaaatctcaaccattcatttaaattgatctaaagg 7668558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 3 - 89
Target Start/End: Complemental strand, 25343299 - 25343213
Alignment:
Q  3 atatagagtcaggattcgttgacatcaggtgtcaacgaattcgttaacaccaaatcacatccattgatttaatttaatccaaaggct 89  Q
    ||||||||||||||| |||||||| |||||||||| ||||||||| |||||||||| || ||||  ||||  ||||||| |||||||    
T  25343299 atatagagtcaggatccgttgacaccaggtgtcaatgaattcgttgacaccaaatctcaaccatcaattttttttaatcaaaaggct 25343213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 13 - 107
Target Start/End: Complemental strand, 31278204 - 31278110
Alignment:
Q  13 aggattcgttgacatcaggtgtcaacgaattcgttaacaccaaatcacatccattgatttaatttaatccaaaggctcttgttaattcacttaac 107  Q
    ||||| |||||||| ||| |||||||| ||||||| |||||||||||  ||| ||||||| |||| |||  | ||||||||||||||||||||||    
T  31278204 aggatccgttgacaccagatgtcaacggattcgttgacaccaaatcatgtcccttgatttcatttgatcggatggctcttgttaattcacttaac 31278110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 30660583 - 30660648
Alignment:
Q  1 atatatagagtcaggattcgttgacatcaggtgtcaacgaattcgttaacaccaaatcacatccat 66  Q
    ||||||||||| ||||| |||||||| |||||||||||| ||||||| |||||||||| |||||||    
T  30660583 atatatagagttaggatccgttgacaccaggtgtcaacggattcgttgacaccaaatctcatccat 30660648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 8 - 63
Target Start/End: Complemental strand, 15305295 - 15305240
Alignment:
Q  8 gagtcaggattcgttgacatcaggtgtcaacgaattcgttaacaccaaatcacatc 63  Q
    |||||||||| | ||||||||||||||||| ||||||||| |||||||||||||||    
T  15305295 gagtcaggatccattgacatcaggtgtcaatgaattcgttgacaccaaatcacatc 15305240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 18977831 - 18977746
Alignment:
Q  1 atatatagagtcaggattcgttgacatcaggtgtcaacgaattcgttaacaccaaatcacatccattgatttaatttaatccaaagg 87  Q
    ||||||| ||||||||| | |||||| |||||||||||| |||||||||||||||||| || ||||  ||||  |||||||||||||    
T  18977831 atatatatagtcaggatccattgacaccaggtgtcaacggattcgttaacaccaaatctcaaccatcaattt-ttttaatccaaagg 18977746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 21497045 - 21496959
Alignment:
Q  1 atatatagagtcaggattcgttgacatcaggtgtcaacgaattcgttaacaccaaatcacatccattgatttaatttaatccaaagg 87  Q
    ||||||| | ||||||| |||||||| |||||||||||||||||||| |||||||||| || || || || | |||||||| |||||    
T  21497045 atatatataatcaggatccgttgacaacaggtgtcaacgaattcgttgacaccaaatctcaaccgtttatctcatttaatcaaaagg 21496959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 8 - 90
Target Start/End: Original strand, 25343300 - 25343382
Alignment:
Q  8 gagtcaggattcgttgacatcaggtgtcaacgaattcgttaacaccaaatcacatccattgatttaatttaatccaaaggctc 90  Q
    |||| ||||| |||||||| |||||||||||| ||||||| |||||||||| || ||||  |||| |||||||| ||||||||    
T  25343300 gagttaggatccgttgacaccaggtgtcaacggattcgttgacaccaaatctcaaccatcaattttatttaatcaaaaggctc 25343382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 12 - 81
Target Start/End: Complemental strand, 30661506 - 30661437
Alignment:
Q  12 caggattcgttgacatcaggtgtcaacgaattcgttaacaccaaatcacatccattgatttaatttaatc 81  Q
    |||||| |||||||| |||||||||||| ||||||| |||||||||| || || ||||||| ||||||||    
T  30661506 caggatccgttgacaccaggtgtcaacggattcgttgacaccaaatctcaaccgttgattttatttaatc 30661437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 37706418 - 37706474
Alignment:
Q  1 atatatagagtcaggattcgttgacatcaggtgtcaacgaattcgttaacaccaaat 57  Q
    ||||||||||||||||| | |||||| ||||| |||||| |||||||||||||||||    
T  37706418 atatatagagtcaggatccattgacaccaggtatcaacggattcgttaacaccaaat 37706474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 8 - 84
Target Start/End: Original strand, 38225297 - 38225373
Alignment:
Q  8 gagtcaggattcgttgacatcaggtgtcaacgaattcgttaacaccaaatcacatccattgatttaatttaatccaa 84  Q
    |||||| ||| |||||||| ||||||||||||||| |||||||||||||||| | ||||| |||   ||||||||||    
T  38225297 gagtcatgatccgttgacaccaggtgtcaacgaatccgttaacaccaaatcatagccatttattatgtttaatccaa 38225373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 8 - 88
Target Start/End: Original strand, 46428184 - 46428263
Alignment:
Q  8 gagtcaggattcgttgacatcaggtgtcaacgaattcgttaacaccaaatcacatccattgatttaatttaatccaaaggc 88  Q
    |||||||||| |||||||| |||||||||||| ||||||| |||||||||| || ||||  || | |||||||||||||||    
T  46428184 gagtcaggatccgttgacaccaggtgtcaacggattcgttgacaccaaatctcaaccatctatat-atttaatccaaaggc 46428263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 7 - 58
Target Start/End: Original strand, 26636099 - 26636150
Alignment:
Q  7 agagtcaggattcgttgacatcaggtgtcaacgaattcgttaacaccaaatc 58  Q
    ||||||||||| |||||||| |||||||||||| ||||||| ||||||||||    
T  26636099 agagtcaggatccgttgacaccaggtgtcaacggattcgttgacaccaaatc 26636150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 28 - 103
Target Start/End: Original strand, 31277440 - 31277515
Alignment:
Q  28 caggtgtcaacgaattcgttaacaccaaatcacatccattgatttaatttaatccaaaggctcttgttaattcact 103  Q
    |||||||||||||||||||| ||||||||| |  ||| ||||||| |||| |||||| |||||||  |||||||||    
T  31277440 caggtgtcaacgaattcgttgacaccaaattatgtcccttgatttgatttgatccaagggctcttagtaattcact 31277515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 8 - 67
Target Start/End: Complemental strand, 37395554 - 37395495
Alignment:
Q  8 gagtcaggattcgttgacatcaggtgtcaacgaattcgttaacaccaaatcacatccatt 67  Q
    |||| ||||| |||||||| |||||||||||| |||||||||||||||||  ||||||||    
T  37395554 gagttaggatccgttgacaccaggtgtcaacggattcgttaacaccaaatttcatccatt 37395495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 58
Target Start/End: Original strand, 25599019 - 25599069
Alignment:
Q  8 gagtcaggattcgttgacatcaggtgtcaacgaattcgttaacaccaaatc 58  Q
    |||||||||| |||||||| |||||||||||| ||||||| ||||||||||    
T  25599019 gagtcaggatccgttgacaccaggtgtcaacggattcgttgacaccaaatc 25599069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 58
Target Start/End: Original strand, 27948443 - 27948493
Alignment:
Q  8 gagtcaggattcgttgacatcaggtgtcaacgaattcgttaacaccaaatc 58  Q
    |||| ||||| |||||||| |||||||||||||||||||| ||||||||||    
T  27948443 gagttaggatccgttgacaccaggtgtcaacgaattcgttgacaccaaatc 27948493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 66
Target Start/End: Complemental strand, 37950522 - 37950464
Alignment:
Q  8 gagtcaggattcgttgacatcaggtgtcaacgaattcgttaacaccaaatcacatccat 66  Q
    |||| ||||| |||||||| |||||||||||| ||||||| |||||||||| |||||||    
T  37950522 gagttaggatccgttgacaccaggtgtcaacggattcgttgacaccaaatctcatccat 37950464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 58
Target Start/End: Original strand, 1417610 - 1417655
Alignment:
Q  13 aggattcgttgacatcaggtgtcaacgaattcgttaacaccaaatc 58  Q
    ||||| |||||||| |||||||||||||||||||| ||||||||||    
T  1417610 aggatccgttgacaccaggtgtcaacgaattcgttgacaccaaatc 1417655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 58
Target Start/End: Complemental strand, 3029248 - 3029203
Alignment:
Q  13 aggattcgttgacatcaggtgtcaacgaattcgttaacaccaaatc 58  Q
    ||||| |||||||| |||||||||||||||||||| ||||||||||    
T  3029248 aggatccgttgacaccaggtgtcaacgaattcgttgacaccaaatc 3029203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 58
Target Start/End: Complemental strand, 38226025 - 38225980
Alignment:
Q  13 aggattcgttgacatcaggtgtcaacgaattcgttaacaccaaatc 58  Q
    ||||| |||||||| |||||||||||||||||||| ||||||||||    
T  38226025 aggatccgttgacaccaggtgtcaacgaattcgttgacaccaaatc 38225980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 8 - 57
Target Start/End: Complemental strand, 45099948 - 45099899
Alignment:
Q  8 gagtcaggattcgttgacatcaggtgtcaacgaattcgttaacaccaaat 57  Q
    |||||||||| |||||||| |||||||||||| ||||||| |||||||||    
T  45099948 gagtcaggatccgttgacaccaggtgtcaacggattcgttgacaccaaat 45099899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 81
Target Start/End: Complemental strand, 24389666 - 24389598
Alignment:
Q  13 aggattcgttgacatcaggtgtcaacgaattcgttaacaccaaatcacatccattgatttaatttaatc 81  Q
    ||||| |||||||| |||||||||||| |||| || |||||||||| || ||||| |||| ||||||||    
T  24389666 aggatccgttgacaccaggtgtcaacggattcattgacaccaaatctcaaccatttattttatttaatc 24389598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 49 - 89
Target Start/End: Complemental strand, 37706336 - 37706296
Alignment:
Q  49 acaccaaatcacatccattgatttaatttaatccaaaggct 89  Q
    |||||||||| |||||||| |||||||||||||||||||||    
T  37706336 acaccaaatctcatccattcatttaatttaatccaaaggct 37706296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 81
Target Start/End: Complemental strand, 48670969 - 48670909
Alignment:
Q  21 ttgacatcaggtgtcaacgaattcgttaacaccaaatcacatccattgatttaatttaatc 81  Q
    |||||| |||||||||||||||| ||| |||||||||| |||||||| ||||  |||||||    
T  48670969 ttgacaccaggtgtcaacgaatttgttcacaccaaatctcatccattaatttgttttaatc 48670909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 58
Target Start/End: Complemental strand, 3772581 - 3772531
Alignment:
Q  8 gagtcaggattcgttgacatcaggtgtcaacgaattcgttaacaccaaatc 58  Q
    |||| ||||| |||||||| |||||||||||| ||||||| ||||||||||    
T  3772581 gagttaggatccgttgacaccaggtgtcaacgtattcgttgacaccaaatc 3772531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 58
Target Start/End: Complemental strand, 13785644 - 13785598
Alignment:
Q  12 caggattcgttgacatcaggtgtcaacgaattcgttaacaccaaatc 58  Q
    |||||| |||||||| |||||||||||| ||||||| ||||||||||    
T  13785644 caggatccgttgacaccaggtgtcaacggattcgttgacaccaaatc 13785598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 57
Target Start/End: Complemental strand, 19068446 - 19068401
Alignment:
Q  12 caggattcgttgacatcaggtgtcaacgaattcgttaacaccaaat 57  Q
    |||||| |||||||| |||||||||||| ||||||| |||||||||    
T  19068446 caggatccgttgacaccaggtgtcaacgtattcgttgacaccaaat 19068401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 58
Target Start/End: Complemental strand, 26636914 - 26636865
Alignment:
Q  9 agtcaggattcgttgacatcaggtgtcaacgaattcgttaacaccaaatc 58  Q
    ||||||||| ||||||||  ||||||||||| ||||||| ||||||||||    
T  26636914 agtcaggatccgttgacacaaggtgtcaacggattcgttgacaccaaatc 26636865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 89
Target Start/End: Original strand, 36378809 - 36378890
Alignment:
Q  8 gagtcaggattcgttgacatcaggtgtcaacgaattcgttaacaccaaatcacatccattgatttaatttaatccaaaggct 89  Q
    ||||||||||  ||||||| | |||||| ||| ||||||| |||||||||   |||| ||||||| |||| |||||||||||    
T  36378809 gagtcaggatctgttgacacctggtgtcgacggattcgttgacaccaaattttatccgttgattttatttgatccaaaggct 36378890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 57
Target Start/End: Complemental strand, 3903393 - 3903345
Alignment:
Q  9 agtcaggattcgttgacatcaggtgtcaacgaattcgttaacaccaaat 57  Q
    ||||||||| |||||||| |||||||||||| || |||| |||||||||    
T  3903393 agtcaggatccgttgacaccaggtgtcaacggatccgttgacaccaaat 3903345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 58
Target Start/End: Complemental strand, 24453775 - 24453731
Alignment:
Q  14 ggattcgttgacatcaggtgtcaacgaattcgttaacaccaaatc 58  Q
    ||||||||||||| |||||||||||| ||| ||| ||||||||||    
T  24453775 ggattcgttgacaccaggtgtcaacggatttgttgacaccaaatc 24453731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 169; Significance: 1e-90; HSPs: 36)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 1 - 293
Target Start/End: Complemental strand, 12761558 - 12761266
Alignment:
Q  1 atatatagagtcaggattcgttgacatcaggtgtcaacgaattcgttaacaccaaatcacatccattgatttaatttaatccaaaggctcttgttaattc 100  Q
    ||||||| ||| ||||| | ||| || ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||    
T  12761558 atatatatagttaggatccattggcaccaggtgtcaacgaattcgttaacaccaaatcacatccgttgatttaatttaatccaaagactcttgttaattc 12761459  T
Q  101 acttaacaatgcatgtgaaccatcatctacatggtcttttattccatggttctccatcttccgtgcttgcacattctcaaagatttcaccaatctaatgt 200  Q
    ||||||||||||||||||||||||  ||||||| |||||||||||||| |  ||||||| |  | ||||||||| |||||| |||||||||||||| |||    
T  12761458 acttaacaatgcatgtgaaccatcgcctacatgatcttttattccatgatcttccatctcctttccttgcacatgctcaaacatttcaccaatctattgt 12761359  T
Q  201 gctgcttatgcaaatcaaaatcccactattctattatggtgtagattaattgaatcaaaaattaaaatataaatattgttaacctaatttcat 293  Q
     ||||| |||||||||||||||||||||||  ||| |||| |||||||||||||||||| |||||||||| |||||  |||||||||||||||    
T  12761358 actgctcatgcaaatcaaaatcccactatttaattgtggtatagattaattgaatcaaagattaaaatatgaatatatttaacctaatttcat 12761266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 159
Target Start/End: Original strand, 37852513 - 37852671
Alignment:
Q  1 atatatagagtcaggattcgttgacatcaggtgtcaacgaattcgttaacaccaaatcacatccattgatttaatttaatccaaaggctcttgttaattc 100  Q
    ||||||| ||||||||| |||||||| | ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||    
T  37852513 atatatatagtcaggatccgttgacacctggtgtcaacgaattcgttaacaccaaatcacatccgttgatttaatttaatccaatggctcttgttaattc 37852612  T
Q  101 acttaacaatgcatgtgaaccatcatctacatggtcttttattccatggttctccatct 159  Q
    |||||| |||||||||||||||||| ||||||| ||||||||||||| ||| |||||||    
T  37852613 acttaataatgcatgtgaaccatcacctacatgatcttttattccatagttttccatct 37852671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 8 - 159
Target Start/End: Original strand, 12760773 - 12760924
Alignment:
Q  8 gagtcaggattcgttgacatcaggtgtcaacgaattcgttaacaccaaatcacatccattgatttaatttaatccaaaggctcttgttaattcacttaac 107  Q
    |||| ||||| |||||||| | |||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||  |||||||| |||    
T  12760773 gagttaggatccgttgacacctggtgtcaacgaattcgttaacatcaaatcacatccgttgatttaatttaatccaaaggctcttgaaaattcactaaac 12760872  T
Q  108 aatgcatgtgaaccatcatctacatggtcttttattccatggttctccatct 159  Q
    |||||||||||||||||  ||||||| |||||| ||||||| || |||||||    
T  12760873 aatgcatgtgaaccatcgcctacatgatcttttgttccatgattttccatct 12760924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 13 - 107
Target Start/End: Complemental strand, 17172712 - 17172618
Alignment:
Q  13 aggattcgttgacatcaggtgtcaacgaattcgttaacaccaaatcacatccattgatttaatttaatccaaaggctcttgttaattcacttaac 107  Q
    ||||| |||||||| |||||||||||| ||||||| || ||||||||  ||| ||||||| |||| |||||| ||||||||||||||||||||||    
T  17172712 aggatccgttgacaccaggtgtcaacggattcgttgacgccaaatcatgtcccttgatttcatttgatccaatggctcttgttaattcacttaac 17172618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 17171921 - 17172023
Alignment:
Q  1 atatatagagtcaggattcgttgacatcaggtgtcaacgaattcgttaacaccaaatcacatccattgatttaatttaatccaaaggctcttgttaattc 100  Q
    ||||||||||  ||||| |||||||| |||||||||||||||||||| ||||||||| |  ||| ||||||| |||| |||||| |||||||  ||||||    
T  17171921 atatatagagataggatccgttgacaccaggtgtcaacgaattcgttgacaccaaattatgtcccttgatttgatttgatccaagggctcttagtaattc 17172020  T
Q  101 act 103  Q
    |||    
T  17172021 act 17172023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 7 - 89
Target Start/End: Original strand, 25671166 - 25671248
Alignment:
Q  7 agagtcaggattcgttgacatcaggtgtcaacgaattcgttaacaccaaatcacatccattgatttaatttaatccaaaggct 89  Q
    ||||||||||| |||||||| | ||||| |||| ||||||||||||||||||  | |||||||||| |||| |||||||||||    
T  25671166 agagtcaggatccgttgacacctggtgttaacggattcgttaacaccaaatcctaaccattgatttcatttgatccaaaggct 25671248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 25469148 - 25469091
Alignment:
Q  1 atatatagagtcaggattcgttgacatcaggtgtcaacgaattcgttaacaccaaatc 58  Q
    ||||||||||||||||| |||||||| |||||||||||| ||||||| ||||||||||    
T  25469148 atatatagagtcaggatccgttgacaccaggtgtcaacggattcgttgacaccaaatc 25469091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 13262823 - 13262880
Alignment:
Q  1 atatatagagtcaggattcgttgacatcaggtgtcaacgaattcgttaacaccaaatc 58  Q
    ||||| ||||| ||||| |||||||| |||||||||||||||||||| ||||||||||    
T  13262823 atataaagagttaggatccgttgacaccaggtgtcaacgaattcgttgacaccaaatc 13262880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 19171768 - 19171825
Alignment:
Q  1 atatatagagtcaggattcgttgacatcaggtgtcaacgaattcgttaacaccaaatc 58  Q
    |||||||||||| |||| ||||||||||| ||||||||| ||||||| ||||||||||    
T  19171768 atatatagagtcgggatccgttgacatcaagtgtcaacggattcgttgacaccaaatc 19171825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 30932857 - 30932784
Alignment:
Q  1 atatatagagtcaggattcgttgacatcaggtgtcaacgaattcgttaacaccaaatcacatccattgatttaa 74  Q
    ||||||||||| ||||| |||||||| |||||||||||| |||||||  ||||||||| || ||||| ||||||    
T  30932857 atatatagagtgaggatccgttgacaccaggtgtcaacggattcgttggcaccaaatctcaaccattcatttaa 30932784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 12 - 81
Target Start/End: Complemental strand, 34309281 - 34309212
Alignment:
Q  12 caggattcgttgacatcaggtgtcaacgaattcgttaacaccaaatcacatccattgatttaatttaatc 81  Q
    |||||| |||||||| |||||||||||| ||||||| |||||||||| || || ||||||| ||||||||    
T  34309281 caggatccgttgacaccaggtgtcaacggattcgttgacaccaaatctcaaccgttgattttatttaatc 34309212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 58
Target Start/End: Original strand, 7406242 - 7406292
Alignment:
Q  8 gagtcaggattcgttgacatcaggtgtcaacgaattcgttaacaccaaatc 58  Q
    |||||||||| |||||||| ||||||| |||||||||||| ||||||||||    
T  7406242 gagtcaggatccgttgacaccaggtgttaacgaattcgttgacaccaaatc 7406292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 58
Target Start/End: Original strand, 8987787 - 8987837
Alignment:
Q  8 gagtcaggattcgttgacatcaggtgtcaacgaattcgttaacaccaaatc 58  Q
    ||||||||||  |||||||||||||||||||| ||||||| ||||||||||    
T  8987787 gagtcaggatcggttgacatcaggtgtcaacggattcgttgacaccaaatc 8987837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 5 - 87
Target Start/End: Original strand, 9778221 - 9778302
Alignment:
Q  5 atagagtcaggattcgttgacatcaggtgtcaacgaattcgttaacaccaaatcacatccattgatttaatttaatccaaagg 87  Q
    ||||||||||||| || ||||||||||| |||||| ||||||| ||| |||||| || ||||| | ||| |||||||||||||    
T  9778221 atagagtcaggatccgctgacatcaggtatcaacggattcgttgacatcaaatcccaaccattta-ttattttaatccaaagg 9778302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 66
Target Start/End: Original strand, 49680808 - 49680866
Alignment:
Q  8 gagtcaggattcgttgacatcaggtgtcaacgaattcgttaacaccaaatcacatccat 66  Q
    |||| ||||| |||||||| |||||||||||| ||||||| |||||||||| |||||||    
T  49680808 gagttaggatccgttgacaccaggtgtcaacggattcgttgacaccaaatctcatccat 49680866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 10 - 59
Target Start/End: Complemental strand, 7407056 - 7407007
Alignment:
Q  10 gtcaggattcgttgacatcaggtgtcaacgaattcgttaacaccaaatca 59  Q
    |||||||||||||||||||||||||||||  ||||||| |||| ||||||    
T  7407056 gtcaggattcgttgacatcaggtgtcaacagattcgttgacactaaatca 7407007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 28181523 - 28181580
Alignment:
Q  1 atatatagagtcaggattcgttgacatcaggtgtcaacgaattcgttaacaccaaatc 58  Q
    ||||||| ||| ||||| |||||||| | |||||||||||||||||| ||||||||||    
T  28181523 atatatatagtgaggatccgttgacacctggtgtcaacgaattcgttgacaccaaatc 28181580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 8 - 57
Target Start/End: Complemental strand, 37853190 - 37853141
Alignment:
Q  8 gagtcaggattcgttgacatcaggtgtcaacgaattcgttaacaccaaat 57  Q
    |||||||||| |||| |||||||||||||||| ||||||| |||||||||    
T  37853190 gagtcaggatccgttaacatcaggtgtcaacggattcgttgacaccaaat 37853141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 46909424 - 46909339
Alignment:
Q  1 atatatagagtcaggattcgttgacatcaggtgtcaacgaattcgttaacaccaaatcacatccattgatttaatttaatccaaag 86  Q
    ||||||| ||||||||| |||||||| ||| |||||||  |||| || ||||||||||||| ||||  ||||| ||||||| ||||    
T  46909424 atatatatagtcaggatccgttgacaccagatgtcaacagattcattgacaccaaatcacaaccatccatttagtttaatctaaag 46909339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 58
Target Start/End: Complemental strand, 13263573 - 13263521
Alignment:
Q  6 tagagtcaggattcgttgacatcaggtgtcaacgaattcgttaacaccaaatc 58  Q
    |||||||||||| |||||||| |||||||||| | ||||||| ||||||||||    
T  13263573 tagagtcaggatccgttgacaccaggtgtcaatggattcgttgacaccaaatc 13263521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 75
Target Start/End: Complemental strand, 25733224 - 25733168
Alignment:
Q  19 cgttgacatcaggtgtcaacgaattcgttaacaccaaatcacatccattgatttaat 75  Q
    |||||||||||||| |||||| ||||||||||| |||||| || ||||| |||||||    
T  25733224 cgttgacatcaggtatcaacggattcgttaacatcaaatctcaaccattcatttaat 25733168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 12 - 67
Target Start/End: Complemental strand, 7559250 - 7559195
Alignment:
Q  12 caggattcgttgacatcaggtgtcaacgaattcgttaacaccaaatcacatccatt 67  Q
    |||||| |||||||| |||||||||||| || |||| |||||||||| ||||||||    
T  7559250 caggatccgttgacaccaggtgtcaacggatccgttgacaccaaatctcatccatt 7559195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 7 - 58
Target Start/End: Original strand, 30663354 - 30663405
Alignment:
Q  7 agagtcaggattcgttgacatcaggtgtcaacgaattcgttaacaccaaatc 58  Q
    ||||||||||| |||||||| ||||| |||||| ||||||| ||||||||||    
T  30663354 agagtcaggatccgttgacaccaggtatcaacggattcgttgacaccaaatc 30663405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 7 - 58
Target Start/End: Complemental strand, 50271839 - 50271788
Alignment:
Q  7 agagtcaggattcgttgacatcaggtgtcaacgaattcgttaacaccaaatc 58  Q
    ||||||||||| |||||||| ||||| |||| ||||||||| ||||||||||    
T  50271839 agagtcaggatccgttgacaccaggtatcaatgaattcgttgacaccaaatc 50271788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 58
Target Start/End: Complemental strand, 19172630 - 19172580
Alignment:
Q  8 gagtcaggattcgttgacatcaggtgtcaacgaattcgttaacaccaaatc 58  Q
    |||||||||| | |||||| |||||||||||| ||||||| ||||||||||    
T  19172630 gagtcaggatccattgacaccaggtgtcaacggattcgttgacaccaaatc 19172580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 7 - 57
Target Start/End: Original strand, 34308469 - 34308519
Alignment:
Q  7 agagtcaggattcgttgacatcaggtgtcaacgaattcgttaacaccaaat 57  Q
    |||| |||||| |||||||| |||||||||||| ||||||| |||||||||    
T  34308469 agagacaggatccgttgacaccaggtgtcaacgtattcgttgacaccaaat 34308519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 58
Target Start/End: Complemental strand, 36390422 - 36390372
Alignment:
Q  8 gagtcaggattcgttgacatcaggtgtcaacgaattcgttaacaccaaatc 58  Q
    |||| ||||| |||||||| ||||||||||||||| |||| ||||||||||    
T  36390422 gagttaggatccgttgacaccaggtgtcaacgaatccgttgacaccaaatc 36390372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 58
Target Start/End: Complemental strand, 4433897 - 4433852
Alignment:
Q  13 aggattcgttgacatcaggtgtcaacgaattcgttaacaccaaatc 58  Q
    ||||| |||||||| |||||||||||| ||||||| ||||||||||    
T  4433897 aggatccgttgacaccaggtgtcaacggattcgttgacaccaaatc 4433852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 81
Target Start/End: Original strand, 23026592 - 23026653
Alignment:
Q  20 gttgacatcaggtgtcaacgaattcgttaacaccaaatcacatccattgatttaatttaatc 81  Q
    |||||||||||||||||||| ||||||| ||| |||||| || | ||| |||| ||||||||    
T  23026592 gttgacatcaggtgtcaacggattcgttgacatcaaatctcaactatttattttatttaatc 23026653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 57
Target Start/End: Complemental strand, 27256763 - 27256718
Alignment:
Q  12 caggattcgttgacatcaggtgtcaacgaattcgttaacaccaaat 57  Q
    |||||| |||||||| |||||||||||| ||||||| |||||||||    
T  27256763 caggatccgttgacaccaggtgtcaacgtattcgttgacaccaaat 27256718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 58
Target Start/End: Original strand, 30931898 - 30931935
Alignment:
Q  21 ttgacatcaggtgtcaacgaattcgttaacaccaaatc 58  Q
    |||||| |||||||||||| ||||||||||||||||||    
T  30931898 ttgacaccaggtgtcaacggattcgttaacaccaaatc 30931935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 36689127 - 36689071
Alignment:
Q  1 atatatagagtcaggattcgttgacatcaggtgtcaacgaattcgttaacaccaaat 57  Q
    ||||||| ||||||||||| |||||| ||||||| ||||||| |||| |||| ||||    
T  36689127 atatatatagtcaggattcattgacaccaggtgttaacgaatccgttgacacaaaat 36689071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 36705227 - 36705171
Alignment:
Q  1 atatatagagtcaggattcgttgacatcaggtgtcaacgaattcgttaacaccaaat 57  Q
    ||||||| ||||||||||| |||||| ||||||| ||||||| |||| |||| ||||    
T  36705227 atatatatagtcaggattcattgacaccaggtgttaacgaatccgttgacacaaaat 36705171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 45818011 - 45818067
Alignment:
Q  1 atatatagagtcaggattcgttgacatcaggtgtcaacgaattcgttaacaccaaat 57  Q
    ||||||||||| | ||| |||||||| |||||||||||| |||| || |||||||||    
T  45818011 atatatagagttaagatccgttgacaccaggtgtcaacggattcattgacaccaaat 45818067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 58
Target Start/End: Original strand, 47968650 - 47968678
Alignment:
Q  30 ggtgtcaacgaattcgttaacaccaaatc 58  Q
    |||||||||||||||||||||||||||||    
T  47968650 ggtgtcaacgaattcgttaacaccaaatc 47968678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 89
Target Start/End: Complemental strand, 51661371 - 51661331
Alignment:
Q  49 acaccaaatcacatccattgatttaatttaatccaaaggct 89  Q
    |||||||||| |||||||| |||| ||||||||||||||||    
T  51661371 acaccaaatctcatccattcattttatttaatccaaaggct 51661331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 116; Significance: 5e-59; HSPs: 37)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 8 - 205
Target Start/End: Original strand, 598523 - 598724
Alignment:
Q  8 gagtcaggattcgttgacatcaggtgtcaacgaattcgttaacaccaaatcacatccattgatttaatttaatccaaaggctcttgttaattcacttaac 107  Q
    ||||||||||  ||||||| ||| ||||||||||||||||||||||||||||||||| |||||||||||||| |||||| ||||||||||||||||||||    
T  598523 gagtcaggatctgttgacaccagatgtcaacgaattcgttaacaccaaatcacatccgttgatttaatttaacccaaagactcttgttaattcacttaac 598622  T
Q  108 aatgcatgtgaaccatcatctacatggtcttttattccatgg-ttctccat---cttccgtgcttgcacattctcaaagatttcaccaatctaatgtgct 203  Q
    |||||||||||||||||| ||||||| ||||||||||||||| || | |||   |||| ||| |||||||| |||||| ||||| |||||||||||||||    
T  598623 aatgcatgtgaaccatcacctacatgatcttttattccatggttttttcatctccttcagtgtttgcacatgctcaaacatttctccaatctaatgtgct 598722  T
Q  204 gc 205  Q
    ||    
T  598723 gc 598724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 161 - 293
Target Start/End: Original strand, 44792044 - 44792176
Alignment:
Q  161 ccgtgcttgcacattctcaaagatttcaccaatctaatgtgctgcttatgcaaatcaaaatcccactattctattatggtgtagattaattgaatcaaaa 260  Q
    ||||| |||||||| |||||| |||||||||||||||||||||||| ||| |||| ||||||||||||||| ||| |||||||||| | ||||||||||     
T  44792044 ccgtgtttgcacatgctcaaacatttcaccaatctaatgtgctgctcatgaaaataaaaatcccactattccattttggtgtagatcagttgaatcaaag 44792143  T
Q  261 attaaaatataaatattgttaacctaatttcat 293  Q
    |||| |||||||||||  |||| ||||||||||    
T  44792144 attagaatataaatatatttaaactaatttcat 44792176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 161 - 256
Target Start/End: Original strand, 290434 - 290529
Alignment:
Q  161 ccgtgcttgcacattctcaaagatttcaccaatctaatgtgctgcttatgcaaatcaaaatcccactattctattatggtgtagattaattgaatc 256  Q
    ||||| |||||||| |||||| |||||||||||||||||||||||| ||| |||| ||||||||||||||| ||| |||||||||| |||||||||    
T  290434 ccgtgtttgcacatgctcaaacatttcaccaatctaatgtgctgctcatgaaaatgaaaatcccactattccattgtggtgtagatcaattgaatc 290529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 191 - 293
Target Start/End: Original strand, 290526 - 290628
Alignment:
Q  191 aatctaatgtgctgcttatgcaaatcaaaatcccactattctattatggtgtagattaattgaatcaaaaattaaaatataaatattgttaacctaattt 290  Q
    ||||||||||| |||| ||| |||| ||||||||||||||| ||| |||||||||| |||||||||||| |||| |||||||||||  ||||||||||||    
T  290526 aatctaatgtgttgctcatgaaaatgaaaatcccactattccattgtggtgtagatcaattgaatcaaagattataatataaatatatttaacctaattt 290625  T
Q  291 cat 293  Q
    |||    
T  290626 cat 290628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 8 - 86
Target Start/End: Complemental strand, 44792691 - 44792613
Alignment:
Q  8 gagtcaggattcgttgacatcaggtgtcaacgaattcgttaacaccaaatcacatccattgatttaatttaatccaaag 86  Q
    |||||||||| | |||||| ||||||||||||||||||||||||||||||||||||| ||||||| |||| ||||||||    
T  44792691 gagtcaggatccattgacaccaggtgtcaacgaattcgttaacaccaaatcacatccgttgattttatttgatccaaag 44792613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 44791715 - 44791800
Alignment:
Q  1 atatatagagtcaggattcgttgacatcaggtgtcaacgaattcgttaacaccaaatcacatccattgatttaatttaatccaaag 86  Q
    ||||| ||||||||||| | ||| || ||||||||||||||||||||||||||||||||||||| ||||||| |||| ||||||||    
T  44791715 atataaagagtcaggatccattggcaccaggtgtcaacgaattcgttaacaccaaatcacatccgttgattttatttgatccaaag 44791800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 13 - 107
Target Start/End: Complemental strand, 3654565 - 3654471
Alignment:
Q  13 aggattcgttgacatcaggtgtcaacgaattcgttaacaccaaatcacatccattgatttaatttaatccaaaggctcttgttaattcacttaac 107  Q
    ||||| |||||||  |||||||||||| ||||||| |||||||||||  ||| ||||||| |||| |||||| ||||||||||||||||||||||    
T  3654565 aggatccgttgacgccaggtgtcaacggattcgttgacaccaaatcatgtcccttgatttcatttgatccaatggctcttgttaattcacttaac 3654471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 8 - 85
Target Start/End: Complemental strand, 31329772 - 31329695
Alignment:
Q  8 gagtcaggattcgttgacatcaggtgtcaacgaattcgttaacaccaaatcacatccattgatttaatttaatccaaa 85  Q
    |||||||||| |||||||| |||||||||||| ||||||||||||||||||  | |||||||||| |||| |||||||    
T  31329772 gagtcaggatccgttgacaccaggtgtcaacggattcgttaacaccaaatcctaaccattgatttcatttgatccaaa 31329695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 47688541 - 47688459
Alignment:
Q  1 atatatagagtcaggattcgttgacatcaggtgtcaacgaattcgttaacaccaaatcacatccattgatttaatttaatcca 83  Q
    ||||||||||| ||||| |||||||| |||||||||||| ||||||| |||||||||| || || || |||| ||||||||||    
T  47688541 atatatagagttaggatccgttgacaccaggtgtcaacggattcgttgacaccaaatctcaaccgtttattttatttaatcca 47688459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 11 - 89
Target Start/End: Complemental strand, 7842581 - 7842503
Alignment:
Q  11 tcaggattcgttgacatcaggtgtcaacgaattcgttaacaccaaatcacatccattgatttaatttaatccaaaggct 89  Q
    ||||||| | ||||||||||||||||||||||||||| |||||||||| || ||||  |||| ||| ||||||| ||||    
T  7842581 tcaggatccattgacatcaggtgtcaacgaattcgttgacaccaaatctcaaccatctatttcattaaatccaatggct 7842503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 1465311 - 1465396
Alignment:
Q  1 atatatagagtcaggattcgttgacatcaggtgtcaacgaattcgttaacaccaaatcacatccattgatttaatttaatccaaag 86  Q
    ||||||||||||||||| |||||||| |||||||||||  |||| || ||| ||||||||| ||||  ||||| ||||||| ||||    
T  1465311 atatatagagtcaggatccgttgacaccaggtgtcaacagattcattgacatcaaatcacaaccatccatttagtttaatctaaag 1465396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 8 - 81
Target Start/End: Original strand, 7841542 - 7841615
Alignment:
Q  8 gagtcaggattcgttgacatcaggtgtcaacgaattcgttaacaccaaatcacatccattgatttaatttaatc 81  Q
    |||||||||| |||||||||||||||| |||| ||||||| |||||||||| ||||| |  |||| ||||||||    
T  7841542 gagtcaggatccgttgacatcaggtgttaacggattcgttgacaccaaatctcatccgtatattttatttaatc 7841615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 30573771 - 30573714
Alignment:
Q  1 atatatagagtcaggattcgttgacatcaggtgtcaacgaattcgttaacaccaaatc 58  Q
    ||||||||||||||||| | |||||| |||||||||||| ||||||| ||||||||||    
T  30573771 atatatagagtcaggatccattgacaccaggtgtcaacggattcgttgacaccaaatc 30573714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 53772798 - 53772854
Alignment:
Q  1 atatatagagtcaggattcgttgacatcaggtgtcaacgaattcgttaacaccaaat 57  Q
    ||||||||||| ||||| |||||||| |||||||||||| ||||||| |||||||||    
T  53772798 atatatagagttaggatccgttgacaccaggtgtcaacggattcgttgacaccaaat 53772854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 8 - 67
Target Start/End: Complemental strand, 2446216 - 2446157
Alignment:
Q  8 gagtcaggattcgttgacatcaggtgtcaacgaattcgttaacaccaaatcacatccatt 67  Q
    |||| ||||| |||||||| |||||||||||  |||||||||||||||||| ||||||||    
T  2446216 gagttaggatccgttgacaccaggtgtcaacagattcgttaacaccaaatctcatccatt 2446157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 7 - 58
Target Start/End: Original strand, 24374786 - 24374837
Alignment:
Q  7 agagtcaggattcgttgacatcaggtgtcaacgaattcgttaacaccaaatc 58  Q
    ||||||||||| |||||||| ||| |||||||||||||||| ||||||||||    
T  24374786 agagtcaggatccgttgacaccagctgtcaacgaattcgttgacaccaaatc 24374837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 44469483 - 44469554
Alignment:
Q  1 atatatagagtcaggattcgttgacatcaggtgtcaacgaattcgttaacaccaaatcacatccattgattt 72  Q
    ||||||| ||||| ||| || ||||| |||||||||||||||||||| |||||||||||  |||||| ||||    
T  44469483 atatatatagtcatgatccgatgacaccaggtgtcaacgaattcgttgacaccaaatcatgtccattcattt 44469554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 7841784 - 7841839
Alignment:
Q  1 atatatagagtcaggattcgttgacatcaggtgtcaacgaattcgttaacaccaaatc 58  Q
    ||||||||||| ||||| |||||||||  |||||||||||||||||| ||||||||||    
T  7841784 atatatagagttaggatccgttgacat--ggtgtcaacgaattcgttgacaccaaatc 7841839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 54
Target Start/End: Complemental strand, 16903723 - 16903677
Alignment:
Q  8 gagtcaggattcgttgacatcaggtgtcaacgaattcgttaacacca 54  Q
    ||||||||||||||||||| |||||||||||| ||||||| ||||||    
T  16903723 gagtcaggattcgttgacaccaggtgtcaacggattcgttgacacca 16903677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 58
Target Start/End: Complemental strand, 26147087 - 26147037
Alignment:
Q  8 gagtcaggattcgttgacatcaggtgtcaacgaattcgttaacaccaaatc 58  Q
    |||| ||||| |||||||| |||||||||||||||||||| ||||||||||    
T  26147087 gagttaggatccgttgacaccaggtgtcaacgaattcgttgacaccaaatc 26147037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 89
Target Start/End: Complemental strand, 43146692 - 43146622
Alignment:
Q  19 cgttgacatcaggtgtcaacgaattcgttaacaccaaatcacatccattgatttaatttaatccaaaggct 89  Q
    |||||||| |||||||||||| |||| || |||||||||| |||||||| ||||  ||||||| |||||||    
T  43146692 cgttgacaccaggtgtcaacggattccttgacaccaaatctcatccattaatttggtttaatctaaaggct 43146622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 58
Target Start/End: Complemental strand, 53773641 - 53773591
Alignment:
Q  8 gagtcaggattcgttgacatcaggtgtcaacgaattcgttaacaccaaatc 58  Q
    |||| ||||| ||||||||||||||||||||| ||||||| ||||||||||    
T  53773641 gagttaggatccgttgacatcaggtgtcaacggattcgttgacaccaaatc 53773591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 5 - 58
Target Start/End: Original strand, 9365164 - 9365217
Alignment:
Q  5 atagagtcaggattcgttgacatcaggtgtcaacgaattcgttaacaccaaatc 58  Q
    ||||||||||||| |||| ||| |||||||||||||||| ||| ||||||||||    
T  9365164 atagagtcaggatccgttaacaccaggtgtcaacgaatttgttgacaccaaatc 9365217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 8 - 81
Target Start/End: Original strand, 47687907 - 47687980
Alignment:
Q  8 gagtcaggattcgttgacatcaggtgtcaacgaattcgttaacaccaaatcacatccattgatttaatttaatc 81  Q
    |||| ||||| |||||||| ||||||| |||||||||||| |||||||||| || || || |||| ||||||||    
T  47687907 gagttaggatccgttgacaccaggtgttaacgaattcgttgacaccaaatcgcaaccgtttattttatttaatc 47687980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 7 - 88
Target Start/End: Complemental strand, 47785855 - 47785775
Alignment:
Q  7 agagtcaggattcgttgacatcaggtgtcaacgaattcgttaacaccaaatcacatccattgatttaatttaatccaaaggc 88  Q
    |||||||||||  ||||||| |||||||||||| ||||||| |||||||||| || ||||  || | |||||||||||||||    
T  47785855 agagtcaggatctgttgacaccaggtgtcaacggattcgttgacaccaaatctcaaccatctatat-atttaatccaaaggc 47785775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 52871307 - 52871352
Alignment:
Q  19 cgttgacatcaggtgtcaacgaattcgttaacaccaaatcacatcc 64  Q
    |||||||| |||||||||||| ||||||| ||||||||||||||||    
T  52871307 cgttgacaccaggtgtcaacggattcgttgacaccaaatcacatcc 52871352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 58
Target Start/End: Complemental strand, 16903692 - 16903648
Alignment:
Q  14 ggattcgttgacatcaggtgtcaacgaattcgttaacaccaaatc 58  Q
    ||||||||||||| |||||||||||| ||||||| ||||||||||    
T  16903692 ggattcgttgacaccaggtgtcaacggattcgttgacaccaaatc 16903648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 64
Target Start/End: Complemental strand, 32089668 - 32089612
Alignment:
Q  8 gagtcaggattcgttgacatcaggtgtcaacgaattcgttaacaccaaatcacatcc 64  Q
    |||| ||||| |||||||| ||| |||||||||||||||| | ||||||||||||||    
T  32089668 gagttaggatccgttgacaccagatgtcaacgaattcgttgataccaaatcacatcc 32089612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 56
Target Start/End: Original strand, 40495093 - 40495141
Alignment:
Q  8 gagtcaggattcgttgacatcaggtgtcaacgaattcgttaacaccaaa 56  Q
    |||||||||| |||||||| ||||||||||| |||||||| ||||||||    
T  40495093 gagtcaggatccgttgacaccaggtgtcaacaaattcgttgacaccaaa 40495141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 7 - 57
Target Start/End: Original strand, 2444369 - 2444419
Alignment:
Q  7 agagtcaggattcgttgacatcaggtgtcaacgaattcgttaacaccaaat 57  Q
    ||||| ||||| |||||||| |||||||||||| ||||||| |||||||||    
T  2444369 agagttaggatccgttgacaccaggtgtcaacggattcgttgacaccaaat 2444419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 58
Target Start/End: Complemental strand, 20774235 - 20774185
Alignment:
Q  8 gagtcaggattcgttgacatcaggtgtcaacgaattcgttaacaccaaatc 58  Q
    |||||||||| | |||||| |||||||||||| ||||||| ||||||||||    
T  20774235 gagtcaggatccattgacaccaggtgtcaacggattcgttgacaccaaatc 20774185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 72
Target Start/End: Complemental strand, 42882738 - 42882672
Alignment:
Q  6 tagagtcaggattcgttgacatcaggtgtcaacgaattcgttaacaccaaatcacatccattgattt 72  Q
    |||||| ||||| |||||||| ||| |||||||| ||||||| |||||||||||  |||||| ||||    
T  42882738 tagagttaggatccgttgacaccagatgtcaacggattcgttgacaccaaatcatgtccattcattt 42882672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 58
Target Start/End: Complemental strand, 53148666 - 53148616
Alignment:
Q  8 gagtcaggattcgttgacatcaggtgtcaacgaattcgttaacaccaaatc 58  Q
    |||||||||| | ||||||||||||||||||  ||||||| ||||||||||    
T  53148666 gagtcaggatccattgacatcaggtgtcaacagattcgttgacaccaaatc 53148616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 89
Target Start/End: Complemental strand, 24158875 - 24158794
Alignment:
Q  8 gagtcaggattcgttgacatcaggtgtcaacgaattcgttaacaccaaatcacatccattgatttaatttaatccaaaggct 89  Q
    |||||||||| | |||||| |||||||||||  ||||||| ||||||||||  | || ||||||| |||| ||| |||||||    
T  24158875 gagtcaggatccattgacaccaggtgtcaacagattcgttgacaccaaatcttaaccgttgatttcatttgatctaaaggct 24158794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 58
Target Start/End: Complemental strand, 26159671 - 26159626
Alignment:
Q  13 aggattcgttgacatcaggtgtcaacgaattcgttaacaccaaatc 58  Q
    ||||| ||||||||||| ||||||||| ||||||| ||||||||||    
T  26159671 aggatccgttgacatcaagtgtcaacggattcgttgacaccaaatc 26159626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 90
Target Start/End: Complemental strand, 53733773 - 53733704
Alignment:
Q  21 ttgacatcaggtgtcaacgaattcgttaacaccaaatcacatccattgatttaatttaatccaaaggctc 90  Q
    |||||| |||||||||||| ||||||| |||||||||  || ||||  |||| |||||||| ||||||||    
T  53733773 ttgacaccaggtgtcaacggattcgttgacaccaaatttcaaccatctatttcatttaatcaaaaggctc 53733704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 89
Target Start/End: Complemental strand, 42419724 - 42419684
Alignment:
Q  49 acaccaaatcacatccattgatttaatttaatccaaaggct 89  Q
    |||||||||| |||||||| |||| ||||||||||||||||    
T  42419724 acaccaaatctcatccattcatttcatttaatccaaaggct 42419684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 107; Significance: 1e-53; HSPs: 34)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 147
Target Start/End: Complemental strand, 33277566 - 33277420
Alignment:
Q  1 atatatagagtcaggattcgttgacatcaggtgtcaacgaattcgttaacaccaaatcacatccattgatttaatttaatccaaaggctcttgttaattc 100  Q
    |||||||||||||| || |||||||| ||||||||||||||||||||||||||||||||||||  ||||||||||||||||||| |||||||||||||||    
T  33277566 atatatagagtcagaatccgttgacaccaggtgtcaacgaattcgttaacaccaaatcacatctgttgatttaatttaatccaatggctcttgttaattc 33277467  T
Q  101 acttaacaatgcatgtgaaccatcatctacatggtcttttattccat 147  Q
    ||||||||||||||||||||||||| | ||||| | |||||||||||    
T  33277466 acttaacaatgcatgtgaaccatcacccacatgatattttattccat 33277420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 8 - 147
Target Start/End: Original strand, 10847289 - 10847428
Alignment:
Q  8 gagtcaggattcgttgacatcaggtgtcaacgaattcgttaacaccaaatcacatccattgatttaatttaatccaaaggctcttgttaattcacttaac 107  Q
    |||||||||| |||||||| | ||||||||||||||||||||||| ||||||||||| |||||||||||||||| || ||||||||||||||||||||||    
T  10847289 gagtcaggatccgttgacacctggtgtcaacgaattcgttaacactaaatcacatccgttgatttaatttaatcaaatggctcttgttaattcacttaac 10847388  T
Q  108 aatgcatgtgaaccatcatctacatggtcttttattccat 147  Q
    |||||||||||||||||| ||||||| |||||||||||||    
T  10847389 aatgcatgtgaaccatcacctacatgatcttttattccat 10847428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 8 - 159
Target Start/End: Complemental strand, 44029824 - 44029674
Alignment:
Q  8 gagtcaggattcgttgacatcaggtgtcaacgaattcgttaacaccaaatcacatccattgatttaatttaatccaaaggctcttgttaattcacttaac 107  Q
    |||||||||| |||||||||| |||||||||||||||||||| || |||||||||   |||||||||||||||||||  | | ||||||||| |||||||    
T  44029824 gagtcaggatccgttgacatctggtgtcaacgaattcgttaatactaaatcacatatgttgatttaatttaatccaatagtttttgttaatttacttaac 44029725  T
Q  108 aatgcatgtgaaccatcatctacatggtcttttattccatggttctccatct 159  Q
    |||||||||||||||||| ||||||| ||||||||||||| ||| |||||||    
T  44029724 aatgcatgtgaaccatca-ctacatgatcttttattccatagttttccatct 44029674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 66 - 293
Target Start/End: Original strand, 53629318 - 53629531
Alignment:
Q  66 ttgatttaatttaatccaaaggctcttgttaattcacttaacaatgcatgtgaaccatcatctacatggtcttttattccatggttctccatcttccgtg 165  Q
    ||||||||||||||| |||| |||||| ||||||||||||||||||||||||||||||| | |||| | ||||||||||||||||| |   | |||||      
T  53629318 ttgatttaatttaattcaaaagctcttattaattcacttaacaatgcatgtgaaccatcct-tacacgatcttttattccatggttttggtt-ttccg-- 53629413  T
Q  166 cttgcacattctcaaagatttcaccaatctaatgtgctgcttatgcaaatcaaaatcccactattctattatggtgtagattaattgaatcaaaaattaa 265  Q
              |||||| ||||| ||||||||| |||||| |||||||||||||||||||||||||| | | ||  ||||||||||||||||||| |||||    
T  53629414 ----------ctcaaacatttctccaatctaacgtgctgtttatgcaaatcaaaatcccactattcgagtgtgtagtagattaattgaatcaaagattaa 53629503  T
Q  266 aatataaatattgttaacctaatttcat 293  Q
    |||||||||||  |||||||||||||||    
T  53629504 aatataaatatatttaacctaatttcat 53629531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 7 - 106
Target Start/End: Original strand, 14871150 - 14871249
Alignment:
Q  7 agagtcaggattcgttgacatcaggtgtcaacgaattcgttaacaccaaatcacatccattgatttaatttaatccaaaggctcttgttaattcacttaa 106  Q
    ||||||||||| |||||||| |||||||||||||||||||| |||||||||| |||| ||||| ||| ||||||| | ||||| ||  | ||||||||||    
T  14871150 agagtcaggatccgttgacaccaggtgtcaacgaattcgttgacaccaaatctcatctattgaattagtttaatctagaggctattaattattcacttaa 14871249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 55373768 - 55373682
Alignment:
Q  1 atatatagagtcaggattcgttgacatcaggtgtcaacgaattcgttaacaccaaatcacatccattgatttaatttaatccaaagg 87  Q
    |||||||||||||||||||||||||| |||||||||||| ||||||| |||||||||  || ||||| |||||| || ||| |||||    
T  55373768 atatatagagtcaggattcgttgacaccaggtgtcaacggattcgttgacaccaaattccaaccattcatttaaattgatctaaagg 55373682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 41458024 - 41458107
Alignment:
Q  1 atatatagagtcaggattcgttgacatcaggtgtcaacgaattcgttaacaccaaatcacatccattgatttaatttaatccaaa 85  Q
    |||||||||||||||||||||||| | |||||||||||| ||||||| |||||||||| || || ||| ||| ||||||||||||    
T  41458024 atatatagagtcaggattcgttgataccaggtgtcaacggattcgttgacaccaaatctcaaccgttggttt-atttaatccaaa 41458107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 20213593 - 20213536
Alignment:
Q  1 atatatagagtcaggattcgttgacatcaggtgtcaacgaattcgttaacaccaaatc 58  Q
    ||||||||||||||||| |||||||| |||||||| ||||||||||| ||||||||||    
T  20213593 atatatagagtcaggatccgttgacaccaggtgtcgacgaattcgttgacaccaaatc 20213536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 10 - 106
Target Start/End: Complemental strand, 37520614 - 37520518
Alignment:
Q  10 gtcaggattcgttgacatcaggtgtcaacgaattcgttaacaccaaatcacatccattgatttaatttaatccaaaggctcttgttaattcacttaa 106  Q
    |||||||| |||||| | |||||||||||||||||||| |||||||||| || ||||  || | |||||||| |||||||||  |||| ||||||||    
T  37520614 gtcaggatccgttgataccaggtgtcaacgaattcgttgacaccaaatctcaaccatcaatcttatttaatctaaaggctctcattaactcacttaa 37520518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 3 - 77
Target Start/End: Complemental strand, 46150789 - 46150715
Alignment:
Q  3 atatagagtcaggattcgttgacatcaggtgtcaacgaattcgttaacaccaaatcacatccattgatttaattt 77  Q
    ||||||||||||||| ||||||||  ||||||||||| ||||||| |||||||||| || ||||| |||| ||||    
T  46150789 atatagagtcaggatccgttgacactaggtgtcaacggattcgttgacaccaaatctcaaccatttattttattt 46150715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 8 - 58
Target Start/End: Original strand, 48764475 - 48764525
Alignment:
Q  8 gagtcaggattcgttgacatcaggtgtcaacgaattcgttaacaccaaatc 58  Q
    |||||||||| | ||||||||||||||||||||||||||| ||||||||||    
T  48764475 gagtcaggatccattgacatcaggtgtcaacgaattcgttgacaccaaatc 48764525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 8 - 105
Target Start/End: Complemental strand, 11203256 - 11203159
Alignment:
Q  8 gagtcaggattcgttgacatcaggtgtcaacgaattcgttaacaccaaatcacatccattgatttaatttaatccaaaggctcttgttaattcactta 105  Q
    ||||||| || |||||||| ||||||||||| |||||||| | |||||||||||  | || || | ||||||||||||||||||  ||| ||||||||    
T  11203256 gagtcagaatccgttgacaccaggtgtcaacaaattcgttgaaaccaaatcacaaacctttatctcatttaatccaaaggctctcattatttcactta 11203159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 7 - 107
Target Start/End: Original strand, 959832 - 959932
Alignment:
Q  7 agagtcaggattcgttgacatcaggtgtcaacgaattcgttaacaccaaatcacatccattgatttaatttaatccaaaggctcttgttaattcacttaa 106  Q
    |||| |||||| |||||||| ||||||||||||  |   || ||||||||||| |||| ||||||| |||| |||||| ||||| |||| ||||||||||    
T  959832 agagacaggatccgttgacaccaggtgtcaacggttatattgacaccaaatcatatcccttgatttcatttgatccaatggctcctgttcattcacttaa 959931  T
Q  107 c 107  Q
    |    
T  959932 c 959932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 90
Target Start/End: Original strand, 981676 - 981747
Alignment:
Q  19 cgttgacatcaggtgtcaacgaattcgttaacaccaaatcacatccattgatttaatttaatccaaaggctc 90  Q
    |||||||| |||||||||||||||||||| |||||||||| || || |  |||| |||||||| ||||||||    
T  981676 cgttgacaccaggtgtcaacgaattcgttgacaccaaatctcaaccgtacatttcatttaatcaaaaggctc 981747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 8 - 67
Target Start/End: Complemental strand, 37988273 - 37988214
Alignment:
Q  8 gagtcaggattcgttgacatcaggtgtcaacgaattcgttaacaccaaatcacatccatt 67  Q
    |||||||||| | |||||| |||||||||||||||||||| |||||||||| || |||||    
T  37988273 gagtcaggatccattgacaccaggtgtcaacgaattcgttgacaccaaatctcagccatt 37988214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 105
Target Start/End: Complemental strand, 960622 - 960524
Alignment:
Q  7 agagtcaggattcgttgacatcaggtgtcaacgaattcgttaacaccaaatcacatccattgatttaatttaatccaaaggctcttgttaattcactta 105  Q
    |||| |||||| |||||||| ||||||||||||  |   || ||||||||||| |||| ||||||| |||| |||||| | || |||||||||||||||    
T  960622 agagacaggatccgttgacaccaggtgtcaacggttatattgacaccaaatcatatcccttgatttcatttgatccaatgactattgttaattcactta 960524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 58
Target Start/End: Original strand, 13477055 - 13477105
Alignment:
Q  8 gagtcaggattcgttgacatcaggtgtcaacgaattcgttaacaccaaatc 58  Q
    |||||||||| |||||||| ||||||||||||||||| || ||||||||||    
T  13477055 gagtcaggatccgttgacaccaggtgtcaacgaattcattgacaccaaatc 13477105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 58
Target Start/End: Original strand, 20212978 - 20213028
Alignment:
Q  8 gagtcaggattcgttgacatcaggtgtcaacgaattcgttaacaccaaatc 58  Q
    ||||||| || |||||||| |||||||||||||||||||| ||||||||||    
T  20212978 gagtcagaatccgttgacaccaggtgtcaacgaattcgttgacaccaaatc 20213028  T

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Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 61
Target Start/End: Original strand, 48413316 - 48413370
Alignment:
Q  7 agagtcaggattcgttgacatcaggtgtcaacgaattcgttaacaccaaatcaca 61  Q
    ||||| |||||| ||||||| |||||||||||| ||||||| |||||||||||||    
T  48413316 agagtaaggatttgttgacaccaggtgtcaacggattcgttgacaccaaatcaca 48413370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 58
Target Start/End: Original strand, 48648201 - 48648251
Alignment:
Q  8 gagtcaggattcgttgacatcaggtgtcaacgaattcgttaacaccaaatc 58  Q
    |||||||||| |||||||| |||||||||||| ||||||| ||||||||||    
T  48648201 gagtcaggatccgttgacaccaggtgtcaacggattcgttgacaccaaatc 48648251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 89
Target Start/End: Original strand, 51826546 - 51826616
Alignment:
Q  19 cgttgacatcaggtgtcaacgaattcgttaacaccaaatcacatccattgatttaatttaatccaaaggct 89  Q
    |||||||| ||| |||||||| ||||||||||||||||||  | || ||||||| |||| |||||||||||    
T  51826546 cgttgacaccagatgtcaacggattcgttaacaccaaatcttaaccgttgatttcatttgatccaaaggct 51826616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 5 - 106
Target Start/End: Original strand, 37987228 - 37987329
Alignment:
Q  5 atagagtcaggattcgttgacatcaggtgtcaacgaattcgttaacaccaaatcacatccattgatttaatttaatccaaaggctcttgttaattcactt 104  Q
    ||||||||  ||| |||||||| |||||||||| | ||||||| |||||||||   |||| ||||||| |||| |||||||||||  | || ||||||||    
T  37987228 atagagtcgcgatccgttgacaccaggtgtcaatggattcgttgacaccaaattttatccgttgattttatttgatccaaaggctaatatttattcactt 37987327  T
Q  105 aa 106  Q
    ||    
T  37987328 aa 37987329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 12 - 67
Target Start/End: Complemental strand, 22925483 - 22925428
Alignment:
Q  12 caggattcgttgacatcaggtgtcaacgaattcgttaacaccaaatcacatccatt 67  Q
    ||||||||||||| |||||||||||||| ||  ||| |||||||||| ||||||||    
T  22925483 caggattcgttgaaatcaggtgtcaacggatctgttgacaccaaatctcatccatt 22925428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 58
Target Start/End: Complemental strand, 21727580 - 21727534
Alignment:
Q  12 caggattcgttgacatcaggtgtcaacgaattcgttaacaccaaatc 58  Q
    |||||| |||||||| |||||||||||| ||||||| ||||||||||    
T  21727580 caggatccgttgacaccaggtgtcaacggattcgttgacaccaaatc 21727534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 58
Target Start/End: Original strand, 27082774 - 27082824
Alignment:
Q  8 gagtcaggattcgttgacatcaggtgtcaacgaattcgttaacaccaaatc 58  Q
    |||||||||| | ||||||  ||||||||||||||||||| ||||||||||    
T  27082774 gagtcaggatccattgacactaggtgtcaacgaattcgttgacaccaaatc 27082824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 58
Target Start/End: Complemental strand, 52266508 - 52266458
Alignment:
Q  8 gagtcaggattcgttgacatcaggtgtcaacgaattcgttaacaccaaatc 58  Q
    |||||||||| |||| ||| ||||||| |||||||||||| ||||||||||    
T  52266508 gagtcaggatccgttaacaccaggtgttaacgaattcgttgacaccaaatc 52266458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 58
Target Start/End: Complemental strand, 265152 - 265103
Alignment:
Q  9 agtcaggattcgttgacatcaggtgtcaacgaattcgttaacaccaaatc 58  Q
    ||||| ||| |||||||| |||||||||||| ||||||| ||||||||||    
T  265152 agtcatgatccgttgacaccaggtgtcaacggattcgttgacaccaaatc 265103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 58
Target Start/End: Complemental strand, 13477820 - 13477783
Alignment:
Q  21 ttgacatcaggtgtcaacgaattcgttaacaccaaatc 58  Q
    |||||| |||||||||||||||||||| ||||||||||    
T  13477820 ttgacaccaggtgtcaacgaattcgttgacaccaaatc 13477783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 58
Target Start/End: Original strand, 17603171 - 17603216
Alignment:
Q  13 aggattcgttgacatcaggtgtcaacgaattcgttaacaccaaatc 58  Q
    ||||| |||||||| |||||||||||| ||||||| ||||||||||    
T  17603171 aggatccgttgacaccaggtgtcaacggattcgttgacaccaaatc 17603216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 57
Target Start/End: Original strand, 17605712 - 17605753
Alignment:
Q  16 attcgttgacatcaggtgtcaacgaattcgttaacaccaaat 57  Q
    ||||||||||| |||||||||||| ||||||| |||||||||    
T  17605712 attcgttgacaccaggtgtcaacggattcgttgacaccaaat 17605753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 89
Target Start/End: Original strand, 40932705 - 40932758
Alignment:
Q  36 aacgaattcgttaacaccaaatcacatccattgatttaatttaatccaaaggct 89  Q
    |||| ||||||||||||||||||  | |||||||||| |||| |||||||||||    
T  40932705 aacggattcgttaacaccaaatcctaaccattgatttcatttgatccaaaggct 40932758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 87
Target Start/End: Complemental strand, 48649226 - 48649149
Alignment:
Q  10 gtcaggattcgttgacatcaggtgtcaacgaattcgttaacaccaaatcacatccattgatttaatttaatccaaagg 87  Q
    |||||||| | |||||| |||||||||||  ||||||| ||||||||||  | || ||||||| |||| |||||||||    
T  48649226 gtcaggatccattgacaccaggtgtcaacagattcgttgacaccaaatcttaaccgttgatttcatttgatccaaagg 48649149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 58
Target Start/End: Complemental strand, 51469329 - 51469284
Alignment:
Q  13 aggattcgttgacatcaggtgtcaacgaattcgttaacaccaaatc 58  Q
    ||||| ||||||||||| ||||||||| ||||||| ||||||||||    
T  51469329 aggatccgttgacatcaagtgtcaacggattcgttgacaccaaatc 51469284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 45
Target Start/End: Complemental strand, 52605538 - 52605501
Alignment:
Q  8 gagtcaggattcgttgacatcaggtgtcaacgaattcg 45  Q
    |||||||||| |||||||| ||||||||||||||||||    
T  52605538 gagtcaggatccgttgacaccaggtgtcaacgaattcg 52605501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 60; Significance: 1e-25; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 8 - 87
Target Start/End: Complemental strand, 8489334 - 8489255
Alignment:
Q  8 gagtcaggattcgttgacatcaggtgtcaacgaattcgttaacaccaaatcacatccattgatttaatttaatccaaagg 87  Q
    |||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| ||||||| |||| |||||||||    
T  8489334 gagtcaggatccgttgacaccaggtgtcaacgaattcgttaacaccaaatcacatccgttgattttatttgatccaaagg 8489255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 26529574 - 26529517
Alignment:
Q  1 atatatagagtcaggattcgttgacatcaggtgtcaacgaattcgttaacaccaaatc 58  Q
    ||||||||||||||||| |||||||| |||||||||||| ||||||| ||||||||||    
T  26529574 atatatagagtcaggatccgttgacaccaggtgtcaacggattcgttgacaccaaatc 26529517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 7 - 83
Target Start/End: Original strand, 3623171 - 3623247
Alignment:
Q  7 agagtcaggattcgttgacatcaggtgtcaacgaattcgttaacaccaaatcacatccattgatttaatttaatcca 83  Q
    ||||| ||||| |||||||||||||||||||||||||| || |||||||||| || || || |||| ||||||||||    
T  3623171 agagttaggatccgttgacatcaggtgtcaacgaattctttgacaccaaatctcaaccgtttattttatttaatcca 3623247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 2 - 58
Target Start/End: Complemental strand, 19311887 - 19311831
Alignment:
Q  2 tatatagagtcaggattcgttgacatcaggtgtcaacgaattcgttaacaccaaatc 58  Q
    |||||| |||||||||||||||||| |||||||||||| ||||||| ||||||||||    
T  19311887 tatatatagtcaggattcgttgacaccaggtgtcaacggattcgttgacaccaaatc 19311831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 10172027 - 10171970
Alignment:
Q  1 atatatagagtcaggattcgttgacatcaggtgtcaacgaattcgttaacaccaaatc 58  Q
    ||||||||||| ||||| |||||||| |||||||||||| ||||||| ||||||||||    
T  10172027 atatatagagttaggatccgttgacaccaggtgtcaacgcattcgttgacaccaaatc 10171970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 12 - 77
Target Start/End: Complemental strand, 19323817 - 19323752
Alignment:
Q  12 caggattcgttgacatcaggtgtcaacgaattcgttaacaccaaatcacatccattgatttaattt 77  Q
    |||||| |||||||| |||||||||||||||||||| |||||||||| || |||| ||||| ||||    
T  19323817 caggatccgttgacaccaggtgtcaacgaattcgttgacaccaaatctcaaccatcgattttattt 19323752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 7 - 67
Target Start/End: Original strand, 9441233 - 9441293
Alignment:
Q  7 agagtcaggattcgttgacatcaggtgtcaacgaattcgttaacaccaaatcacatccatt 67  Q
    |||| ||||||||||||||| |||||||||||| || |||| |||||||||| ||||||||    
T  9441233 agagacaggattcgttgacaccaggtgtcaacggatccgttgacaccaaatctcatccatt 9441293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 33436335 - 33436247
Alignment:
Q  1 atatatagagtcaggattcgttgacatcaggtgtcaacgaattcgttaacaccaaatcacatccattgatttaatttaatccaaaggct 89  Q
    ||||||| ||||||||| |||||||| ||| |||||||| ||||||| ||||||||||  |  | ||||||| |||| |||||||||||    
T  33436335 atatatatagtcaggatccgttgacaccagatgtcaacggattcgttgacaccaaatcttaatcgttgatttcatttgatccaaaggct 33436247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 2 - 57
Target Start/End: Original strand, 1366959 - 1367014
Alignment:
Q  2 tatatagagtcaggattcgttgacatcaggtgtcaacgaattcgttaacaccaaat 57  Q
    ||||||||| |||||| ||||||| ||||||||||||| ||||||| |||||||||    
T  1366959 tatatagagacaggatccgttgacttcaggtgtcaacggattcgttgacaccaaat 1367014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 89
Target Start/End: Complemental strand, 9442023 - 9441953
Alignment:
Q  19 cgttgacatcaggtgtcaacgaattcgttaacaccaaatcacatccattgatttaatttaatccaaaggct 89  Q
    ||||||||||||||||||||| ||||||| |||||||||  |||||||| | ||  ||||||| |||||||    
T  9442023 cgttgacatcaggtgtcaacggattcgttcacaccaaatttcatccattaaattggtttaatctaaaggct 9441953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 58
Target Start/End: Original strand, 10171273 - 10171323
Alignment:
Q  8 gagtcaggattcgttgacatcaggtgtcaacgaattcgttaacaccaaatc 58  Q
    |||||||||| |||||||| |||||||||||| ||||||| ||||||||||    
T  10171273 gagtcaggatccgttgacaccaggtgtcaacggattcgttgacaccaaatc 10171323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 19 - 66
Target Start/End: Original strand, 19322991 - 19323038
Alignment:
Q  19 cgttgacatcaggtgtcaacgaattcgttaacaccaaatcacatccat 66  Q
    |||||||| |||||||||||| ||||||| |||||||||| |||||||    
T  19322991 cgttgacaccaggtgtcaacggattcgttgacaccaaatctcatccat 19323038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 8 - 67
Target Start/End: Original strand, 25060813 - 25060872
Alignment:
Q  8 gagtcaggattcgttgacatcaggtgtcaacgaattcgttaacaccaaatcacatccatt 67  Q
    |||| ||||| |||||||| |||||||||||  |||||||||||| ||||| ||||||||    
T  25060813 gagttaggatccgttgacaccaggtgtcaacagattcgttaacacaaaatctcatccatt 25060872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 57
Target Start/End: Complemental strand, 9442104 - 9442066
Alignment:
Q  19 cgttgacatcaggtgtcaacgaattcgttaacaccaaat 57  Q
    ||||||||||||||||||||| ||||||| |||||||||    
T  9442104 cgttgacatcaggtgtcaacggattcgttcacaccaaat 9442066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 66
Target Start/End: Original strand, 18227729 - 18227786
Alignment:
Q  8 gagtcaggattcgttgacatcaggtgtcaacgaattcgttaacaccaaatcacatccat 66  Q
    |||||||||| |||||||| ||| |||||||| ||||||| ||||||||||||| ||||    
T  18227729 gagtcaggatccgttgacaccag-tgtcaacggattcgttgacaccaaatcacaaccat 18227786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 58
Target Start/End: Original strand, 26528820 - 26528870
Alignment:
Q  8 gagtcaggattcgttgacatcaggtgtcaacgaattcgttaacaccaaatc 58  Q
    |||| ||||| |||||||| |||||||||||| ||||||| ||||||||||    
T  26528820 gagttaggatccgttgacaccaggtgtcaacgcattcgttgacaccaaatc 26528870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 57
Target Start/End: Original strand, 505534 - 505583
Alignment:
Q  8 gagtcaggattcgttgacatcaggtgtcaacgaattcgttaacaccaaat 57  Q
    ||||||||||  |||||||||||||||||||  ||||||| |||||||||    
T  505534 gagtcaggatctgttgacatcaggtgtcaacagattcgttgacaccaaat 505583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 81
Target Start/End: Complemental strand, 3623801 - 3623728
Alignment:
Q  8 gagtcaggattcgttgacatcaggtgtcaacgaattcgttaacaccaaatcacatccattgatttaatttaatc 81  Q
    |||| ||||| |||||||| ||| ||| |||||||||||| |||||||||| || || || |||| ||||||||    
T  3623801 gagttaggatccgttgacaccagatgttaacgaattcgttgacaccaaatcgcaaccgtttattttatttaatc 3623728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 3e-23; HSPs: 30)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 8 - 87
Target Start/End: Complemental strand, 11751123 - 11751044
Alignment:
Q  8 gagtcaggattcgttgacatcaggtgtcaacgaattcgttaacaccaaatcacatccattgatttaatttaatccaaagg 87  Q
    |||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||| ||||||| |||| |||||||||    
T  11751123 gagttaggatccgttgacaccaggtgtcaacgaattcgttaacaccaaatcacatccgttgattttatttgatccaaagg 11751044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 1296370 - 1296458
Alignment:
Q  1 atatatagagtcaggattcgttgacatcaggtgtcaacgaattcgttaacaccaaatcacatccattgatttaatttaatccaaaggct 89  Q
    ||||||||||||||||| |||||||| |||||||||||||||||||| |||||||||| || ||||  ||||  ||||||| |||||||    
T  1296370 atatatagagtcaggatccgttgacaccaggtgtcaacgaattcgttgacaccaaatctcaaccatcaattttttttaatcaaaaggct 1296458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 13 - 107
Target Start/End: Complemental strand, 27178694 - 27178600
Alignment:
Q  13 aggattcgttgacatcaggtgtcaacgaattcgttaacaccaaatcacatccattgatttaatttaatccaaaggctcttgttaattcacttaac 107  Q
    ||||| |||||||| |||||||||||| |||  || |||||||||||  ||| ||||||| |||| |||||| ||||||||||||||||||||||    
T  27178694 aggatccgttgacaccaggtgtcaacggattgtttgacaccaaatcatgtcccttgatttcatttgatccaatggctcttgttaattcacttaac 27178600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 8 - 83
Target Start/End: Complemental strand, 18174724 - 18174649
Alignment:
Q  8 gagtcaggattcgttgacatcaggtgtcaacgaattcgttaacaccaaatcacatccattgatttaatttaatcca 83  Q
    |||| ||||| ||||||||||||||||||||||||||||| |||||||||| || || || |||| ||||||||||    
T  18174724 gagttaggatccgttgacatcaggtgtcaacgaattcgttgacaccaaatctcaaccgtttattttatttaatcca 18174649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 13 - 103
Target Start/End: Original strand, 27177915 - 27178005
Alignment:
Q  13 aggattcgttgacatcaggtgtcaacgaattcgttaacaccaaatcacatccattgatttaatttaatccaaaggctcttgttaattcact 103  Q
    ||||| |||||||| |||||||||||||||||||| ||||||||| |  ||| ||||||| |||| |||||| |||||||  |||||||||    
T  27177915 aggatccgttgacaccaggtgtcaacgaattcgttgacaccaaattatgtcccttgatttgatttgatccaagggctcttagtaattcact 27178005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 8541742 - 8541799
Alignment:
Q  1 atatatagagtcaggattcgttgacatcaggtgtcaacgaattcgttaacaccaaatc 58  Q
    ||||||||||||||||| |||||||||||||| |||||||||||||| |||| |||||    
T  8541742 atatatagagtcaggatccgttgacatcaggtctcaacgaattcgttgacacaaaatc 8541799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 8 - 89
Target Start/End: Complemental strand, 9276384 - 9276303
Alignment:
Q  8 gagtcaggattcgttgacatcaggtgtcaacgaattcgttaacaccaaatcacatccattgatttaatttaatccaaaggct 89  Q
    |||||||||| |||||||| |||||||||||||||||||| |||||||||| || ||||  ||||  ||||||| |||||||    
T  9276384 gagtcaggatccgttgacaccaggtgtcaacgaattcgttgacaccaaatctcaaccatcaattttttttaatcaaaaggct 9276303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 8 - 84
Target Start/End: Original strand, 22301192 - 22301268
Alignment:
Q  8 gagtcaggattcgttgacatcaggtgtcaacgaattcgttaacaccaaatcacatccattgatttaatttaatccaa 84  Q
    |||||||||| |||||||| ||||||||||||||| |||||||||||||||| | ||||| |||   ||||||||||    
T  22301192 gagtcaggatccgttgacaccaggtgtcaacgaatccgttaacaccaaatcatagccatttattatgtttaatccaa 22301268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 10 - 86
Target Start/End: Complemental strand, 34812908 - 34812832
Alignment:
Q  10 gtcaggattcgttgacatcaggtgtcaacgaattcgttaacaccaaatcacatccattgatttaatttaatccaaag 86  Q
    |||||||| |||||||| ||| |||||||| ||||||||||||||||||  | |||||||||| |||| ||||||||    
T  34812908 gtcaggatccgttgacaccagttgtcaacggattcgttaacaccaaatcctaaccattgatttcatttgatccaaag 34812832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 7 - 58
Target Start/End: Complemental strand, 22560623 - 22560572
Alignment:
Q  7 agagtcaggattcgttgacatcaggtgtcaacgaattcgttaacaccaaatc 58  Q
    ||||||||||| ||||||||||||||||||||| ||||||| ||||||||||    
T  22560623 agagtcaggatccgttgacatcaggtgtcaacggattcgttgacaccaaatc 22560572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 8 - 90
Target Start/End: Complemental strand, 1297177 - 1297095
Alignment:
Q  8 gagtcaggattcgttgacatcaggtgtcaacgaattcgttaacaccaaatcacatccattgatttaatttaatccaaaggctc 90  Q
    |||| ||||| |||||||| |||||||||||| ||||||| |||||||||| || ||||  |||| |||||||| ||||||||    
T  1297177 gagttaggatccgttgacaccaggtgtcaacggattcgttgacaccaaatctcaaccatcaattttatttaatcaaaaggctc 1297095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 8 - 90
Target Start/End: Original strand, 9275584 - 9275666
Alignment:
Q  8 gagtcaggattcgttgacatcaggtgtcaacgaattcgttaacaccaaatcacatccattgatttaatttaatccaaaggctc 90  Q
    |||| ||||| |||||||| |||||||||||| ||||||| |||||||||| || ||||  |||| |||||||| ||||||||    
T  9275584 gagttaggatccgttgacaccaggtgtcaacggattcgttgacaccaaatctcaaccatcaattttatttaatcaaaaggctc 9275666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 12 - 58
Target Start/End: Original strand, 38361069 - 38361115
Alignment:
Q  12 caggattcgttgacatcaggtgtcaacgaattcgttaacaccaaatc 58  Q
    |||||| ||||||||||||||||||||||||||||| ||||||||||    
T  38361069 caggatacgttgacatcaggtgtcaacgaattcgttgacaccaaatc 38361115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 12 - 72
Target Start/End: Original strand, 9540333 - 9540393
Alignment:
Q  12 caggattcgttgacatcaggtgtcaacgaattcgttaacaccaaatcacatccattgattt 72  Q
    |||||| |||||||| |||||||||||||||||||| ||||||||||  | ||||||||||    
T  9540333 caggatccgttgacaccaggtgtcaacgaattcgttgacaccaaatcttaaccattgattt 9540393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 81
Target Start/End: Original strand, 18174096 - 18174170
Alignment:
Q  7 agagtcaggattcgttgacatcaggtgtcaacgaattcgttaacaccaaatcacatccattgatttaatttaatc 81  Q
    ||||| ||||| |||||||| ||||||| |||||||||||| |||||||||| || || || |||| ||||||||    
T  18174096 agagttaggatccgttgacaccaggtgttaacgaattcgttgacaccaaatcgcaaccgtttattttatttaatc 18174170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 58
Target Start/End: Original strand, 26752025 - 26752075
Alignment:
Q  8 gagtcaggattcgttgacatcaggtgtcaacgaattcgttaacaccaaatc 58  Q
    |||||||||| |||||||| ||||||||||||||| ||||||||| |||||    
T  26752025 gagtcaggatccgttgacaccaggtgtcaacgaatccgttaacactaaatc 26752075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 11750248 - 11750305
Alignment:
Q  1 atatatagagtcaggattcgttgacatcaggtgtcaacgaattcgttaacaccaaatc 58  Q
    ||||||||||| ||||| | |||||| |||||||||||| ||||||| ||||||||||    
T  11750248 atatatagagttaggatccattgacaccaggtgtcaacggattcgttgacaccaaatc 11750305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 58
Target Start/End: Complemental strand, 22301919 - 22301874
Alignment:
Q  13 aggattcgttgacatcaggtgtcaacgaattcgttaacaccaaatc 58  Q
    ||||| |||||||| |||||||||||||||||||| ||||||||||    
T  22301919 aggatccgttgacaccaggtgtcaacgaattcgttgacaccaaatc 22301874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 24933827 - 24933900
Alignment:
Q  1 atatatagagtcaggattcgttgacatcaggtgtcaacgaattcgttaacaccaaatcacatccattgatttaa 74  Q
    ||||| |||| |||||| |||||||| | ||||||||||||||| || |||||||||| || ||||| ||||||    
T  24933827 atatagagagacaggatccgttgacacctggtgtcaacgaattcattgacaccaaatctcaaccattcatttaa 24933900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 36237622 - 36237678
Alignment:
Q  1 atatatagagtcaggattcgttgacatcaggtgtcaacgaattcgttaacaccaaat 57  Q
    ||||| ||||||||||| |||||||| |||||||||||| |||| || |||||||||    
T  36237622 atatagagagtcaggatccgttgacaccaggtgtcaacggattcattgacaccaaat 36237678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 74
Target Start/End: Complemental strand, 12725669 - 12725603
Alignment:
Q  8 gagtcaggattcgttgacatcaggtgtcaacgaattcgttaacaccaaatcacatccattgatttaa 74  Q
    |||| ||||| |||||||| |||||||||||| ||| ||| |||||||||| || ||||| ||||||    
T  12725669 gagttaggatccgttgacaccaggtgtcaacggatttgttgacaccaaatcccaaccattcatttaa 12725603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 58
Target Start/End: Original strand, 18820430 - 18820480
Alignment:
Q  8 gagtcaggattcgttgacatcaggtgtcaacgaattcgttaacaccaaatc 58  Q
    ||||| |||| | ||||||||||||||||||| ||||||| ||||||||||    
T  18820430 gagtcgggatccattgacatcaggtgtcaacggattcgttgacaccaaatc 18820480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 58
Target Start/End: Complemental strand, 29559462 - 29559424
Alignment:
Q  20 gttgacatcaggtgtcaacgaattcgttaacaccaaatc 58  Q
    ||||||| |||||||||||||||||||| ||||||||||    
T  29559462 gttgacaccaggtgtcaacgaattcgttgacaccaaatc 29559424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 58
Target Start/End: Original strand, 29719448 - 29719494
Alignment:
Q  12 caggattcgttgacatcaggtgtcaacgaattcgttaacaccaaatc 58  Q
    |||||| |||||||| |||||||||||| ||||||| ||||||||||    
T  29719448 caggatccgttgacaccaggtgtcaacggattcgttgacaccaaatc 29719494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 18821292 - 18821235
Alignment:
Q  1 atatatagagtcaggattcgttgacatcaggtgtcaacgaattcgttaacaccaaatc 58  Q
    ||||||||||||||||| | |||||| |||||||||||| |||  || ||||||||||    
T  18821292 atatatagagtcaggatccattgacaccaggtgtcaacggattaattgacaccaaatc 18821235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 89
Target Start/End: Complemental strand, 24121344 - 24121263
Alignment:
Q  8 gagtcaggattcgttgacatcaggtgtcaacgaattcgttaacaccaaatcacatccattgatttaatttaatccaaaggct 89  Q
    |||||||||| | |||||| |||||||||||  |||| || | |||||||| |||||||| ||||  ||||||| |||||||    
T  24121344 gagtcaggatccattgacaccaggtgtcaacagattcattgagaccaaatctcatccattaatttggtttaatctaaaggct 24121263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 42182676 - 42182619
Alignment:
Q  1 atatatagagtcaggattcgttgacatcaggtgtcaacgaattcgttaacaccaaatc 58  Q
    ||||||||||| ||||  |||||||| |||||||||| | ||||||| ||||||||||    
T  42182676 atatatagagttaggacccgttgacaccaggtgtcaagggattcgttgacaccaaatc 42182619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 89
Target Start/End: Original strand, 863247 - 863287
Alignment:
Q  49 acaccaaatcacatccattgatttaatttaatccaaaggct 89  Q
    |||||||||| |||||||| |||| ||||||||||||||||    
T  863247 acaccaaatctcatccattcattttatttaatccaaaggct 863287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 58
Target Start/End: Original strand, 12724733 - 12724789
Alignment:
Q  2 tatatagagtcaggattcgttgacatcaggtgtcaacgaattcgttaacaccaaatc 58  Q
    |||||||||| |||||||||||||| ||| | |||||| ||||||| |||| |||||    
T  12724733 tatatagagttaggattcgttgacaccagttatcaacggattcgttgacactaaatc 12724789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 58
Target Start/End: Complemental strand, 26752771 - 26752727
Alignment:
Q  14 ggattcgttgacatcaggtgtcaacgaattcgttaacaccaaatc 58  Q
    |||| |||||||| |||||||||||||||||||| ||| ||||||    
T  26752771 ggatccgttgacaccaggtgtcaacgaattcgttgacatcaaatc 26752727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 5e-19; HSPs: 30)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 29087915 - 29088003
Alignment:
Q  1 atatatagagtcaggattcgttgacatcaggtgtcaacgaattcgttaacaccaaatcacatccattgatttaatttaatccaaaggct 89  Q
    ||||||||||||||||| |||||||| |||||||||||| |||| || |||||||||| |||||||| ||||  ||||||| |||||||    
T  29087915 atatatagagtcaggatccgttgacaccaggtgtcaacggattcattgacaccaaatctcatccattaatttggtttaatctaaaggct 29088003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 4084870 - 4084941
Alignment:
Q  1 atatatagagtcaggattcgttgacatcaggtgtcaacgaattcgttaacaccaaatcacatccattgattt 72  Q
    ||||||||||||||||| |||||||| | |||||||||||||||||| |||||||||| || ||||| ||||    
T  4084870 atatatagagtcaggatccgttgacacctggtgtcaacgaattcgttgacaccaaatctcaaccattcattt 4084941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 8 - 83
Target Start/End: Original strand, 17071221 - 17071296
Alignment:
Q  8 gagtcaggattcgttgacatcaggtgtcaacgaattcgttaacaccaaatcacatccattgatttaatttaatcca 83  Q
    |||| ||||| ||||||||||||||||||||||||||||| |||||||||| || || || |||| ||||||||||    
T  17071221 gagttaggatccgttgacatcaggtgtcaacgaattcgttgacaccaaatctcaaccgtttattttatttaatcca 17071296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 13 - 83
Target Start/End: Original strand, 34600263 - 34600333
Alignment:
Q  13 aggattcgttgacatcaggtgtcaacgaattcgttaacaccaaatcacatccattgatttaatttaatcca 83  Q
    ||||| ||||||||||||||||||||||||||||| |||||||||| || || || |||| ||||||||||    
T  34600263 aggatccgttgacatcaggtgtcaacgaattcgttgacaccaaatctcaaccgtttattttatttaatcca 34600333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 29046019 - 29046076
Alignment:
Q  1 atatatagagtcaggattcgttgacatcaggtgtcaacgaattcgttaacaccaaatc 58  Q
    ||||||||||||||||| |||||||| |||||||||||| ||||||| ||||||||||    
T  29046019 atatatagagtcaggatccgttgacaccaggtgtcaacggattcgttgacaccaaatc 29046076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 234691 - 234747
Alignment:
Q  1 atatatagagtcaggattcgttgacatcaggtgtcaacgaattcgttaacaccaaat 57  Q
    ||||||||||||||||| |||||||| |||||||||||| ||||||| |||||||||    
T  234691 atatatagagtcaggatccgttgacaccaggtgtcaacggattcgttgacaccaaat 234747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 14478911 - 14478967
Alignment:
Q  1 atatatagagtcaggattcgttgacatcaggtgtcaacgaattcgttaacaccaaat 57  Q
    ||||||| ||||||||| ||||||||||||||||||||| ||||||| |||||||||    
T  14478911 atatatatagtcaggatccgttgacatcaggtgtcaacggattcgttgacaccaaat 14478967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 17071855 - 17071775
Alignment:
Q  1 atatatagagtcaggattcgttgacatcaggtgtcaacgaattcgttaacaccaaatcacatccattgatttaatttaatc 81  Q
    ||||||||||| ||||| |||||||| ||||||| |||||||||||| |||||||||| || || || |||| ||||||||    
T  17071855 atatatagagttaggatccgttgacaccaggtgttaacgaattcgttgacaccaaatcgcaaccgtttattttatttaatc 17071775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 13 - 104
Target Start/End: Original strand, 7632097 - 7632188
Alignment:
Q  13 aggattcgttgacatcaggtgtcaacgaattcgttaacaccaaatcacatccattgatttaatttaatccaaaggctcttgttaattcactt 104  Q
    ||||| |||||||| |||||||||||| ||||||| ||||||||||  ||||||| ||||| ||| ||| |||||||| | |||||| ||||    
T  7632097 aggatccgttgacaccaggtgtcaacggattcgttgacaccaaatcttatccatttatttattttgatctaaaggctcgtattaattaactt 7632188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 7 - 105
Target Start/End: Complemental strand, 13306324 - 13306226
Alignment:
Q  7 agagtcaggattcgttgacatcaggtgtcaacgaattcgttaacaccaaatcacatccattgatttaatttaatccaaaggctcttgttaattcactta 105  Q
    ||||||||||| |||||||| | | |||||||||||||||| ||| ||||||||| ||||| || | | |||||||||||| |||  ||| ||||||||    
T  13306324 agagtcaggatccgttgacacctgatgtcaacgaattcgttgacatcaaatcacaaccatttatctcacttaatccaaaggatctcattatttcactta 13306226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 6 - 72
Target Start/End: Original strand, 18617435 - 18617501
Alignment:
Q  6 tagagtcaggattcgttgacatcaggtgtcaacgaattcgttaacaccaaatcacatccattgattt 72  Q
    |||||||||||| |||||| |||||||||||| ||||||||| |||||||||||  |||||| ||||    
T  18617435 tagagtcaggatccgttgatatcaggtgtcaatgaattcgttgacaccaaatcatgtccattcattt 18617501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 8 - 57
Target Start/End: Complemental strand, 19360530 - 19360481
Alignment:
Q  8 gagtcaggattcgttgacatcaggtgtcaacgaattcgttaacaccaaat 57  Q
    |||||||||| |||||||| |||||||||||||||||||| |||||||||    
T  19360530 gagtcaggatccgttgacaccaggtgtcaacgaattcgttgacaccaaat 19360481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 14 - 74
Target Start/End: Original strand, 10554550 - 10554610
Alignment:
Q  14 ggattcgttgacatcaggtgtcaacgaattcgttaacaccaaatcacatccattgatttaa 74  Q
    ||||||||||||| |||||||||||| ||||||| |||||||||| || ||||| ||||||    
T  10554550 ggattcgttgacaccaggtgtcaacggattcgttgacaccaaatctcaaccattcatttaa 10554610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 7 - 74
Target Start/End: Complemental strand, 6476846 - 6476779
Alignment:
Q  7 agagtcaggattcgttgacatcaggtgtcaacgaattcgttaacaccaaatcacatccattgatttaa 74  Q
    |||| |||||| |||||||| |||||||||||| ||||||| |||||||||| || ||||| ||||||    
T  6476846 agagacaggatccgttgacaccaggtgtcaacggattcgttgacaccaaatctcaaccattcatttaa 6476779  T

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Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 89
Target Start/End: Original strand, 36038698 - 36038773
Alignment:
Q  14 ggattcgttgacatcaggtgtcaacgaattcgttaacaccaaatcacatccattgatttaatttaatccaaaggct 89  Q
    |||| |||||||| ||||| |||||| |||||||||||||||||| |||||||| | ||  ||||||| |||||||    
T  36038698 ggatccgttgacaccaggtatcaacggattcgttaacaccaaatctcatccattaaattggtttaatctaaaggct 36038773  T

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Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 58
Target Start/End: Original strand, 19128767 - 19128817
Alignment:
Q  8 gagtcaggattcgttgacatcaggtgtcaacgaattcgttaacaccaaatc 58  Q
    |||||||||| |||||||| |||||||||||| ||||||| ||||||||||    
T  19128767 gagtcaggatccgttgacaccaggtgtcaacggattcgttgacaccaaatc 19128817  T

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Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 81
Target Start/End: Complemental strand, 34709088 - 34709018
Alignment:
Q  11 tcaggattcgttgacatcaggtgtcaacgaattcgttaacaccaaatcacatccattgatttaatttaatc 81  Q
    |||||||  ||||||| |||||||||||| |||||||  ||||||||| |||||||||||||  |||||||    
T  34709088 tcaggatctgttgacaccaggtgtcaacggattcgttggcaccaaatctcatccattgatttggtttaatc 34709018  T

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Target: chr5; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 5 - 67
Target Start/End: Original strand, 43510226 - 43510288
Alignment:
Q  5 atagagtcaggattcgttgacatcaggtgtcaacgaattcgttaacaccaaatcacatccatt 67  Q
    ||||||| ||||| |||||||| |||||||||||  |||||||||||||||||  ||||||||    
T  43510226 atagagttaggatccgttgacaccaggtgtcaacagattcgttaacaccaaatttcatccatt 43510288  T

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Target: chr5; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 8 - 57
Target Start/End: Complemental strand, 237875 - 237826
Alignment:
Q  8 gagtcaggattcgttgacatcaggtgtcaacgaattcgttaacaccaaat 57  Q
    |||||||||| |||||||| |||||||||||| ||||||| |||||||||    
T  237875 gagtcaggatccgttgacaccaggtgtcaacggattcgttgacaccaaat 237826  T

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Target: chr5; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 58
Target Start/End: Complemental strand, 1554132 - 1554087
Alignment:
Q  13 aggattcgttgacatcaggtgtcaacgaattcgttaacaccaaatc 58  Q
    ||||| |||||||| |||||||||||||||||||| ||||||||||    
T  1554132 aggatccgttgacaccaggtgtcaacgaattcgttgacaccaaatc 1554087  T

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Target: chr5; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 8 - 57
Target Start/End: Original strand, 19359701 - 19359750
Alignment:
Q  8 gagtcaggattcgttgacatcaggtgtcaacgaattcgttaacaccaaat 57  Q
    |||||||||| |||||||| |||||||||||| ||||||| |||||||||    
T  19359701 gagtcaggatccgttgacaccaggtgtcaacggattcgttgacaccaaat 19359750  T

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Target: chr5; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 58
Target Start/End: Complemental strand, 1283548 - 1283504
Alignment:
Q  14 ggattcgttgacatcaggtgtcaacgaattcgttaacaccaaatc 58  Q
    ||||||||||||| |||||||||||| ||||||| ||||||||||    
T  1283548 ggattcgttgacaccaggtgtcaacggattcgttgacaccaaatc 1283504  T

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Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 90
Target Start/End: Original strand, 235589 - 235671
Alignment:
Q  8 gagtcaggattcgttgacatcaggtgtcaacgaattcgttaacaccaaatcacatccattgatttaatttaatccaaaggctc 90  Q
    |||| ||||| | |||||| |||||||||||| ||||||| |||||||||| || || |  |||| |||||||| ||||||||    
T  235589 gagttaggatccattgacaccaggtgtcaacggattcgttgacaccaaatctcaaccgtctatttcatttaatcaaaaggctc 235671  T

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Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 84
Target Start/End: Original strand, 1553419 - 1553481
Alignment:
Q  22 tgacatcaggtgtcaacgaattcgttaacaccaaatcacatccattgatttaatttaatccaa 84  Q
    ||||| ||||||||||||||| |||||||||||||||| | ||||| |||   ||||||||||    
T  1553419 tgacaccaggtgtcaacgaatccgttaacaccaaatcatagccatttattatgtttaatccaa 1553481  T

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Target: chr5; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 58
Target Start/End: Original strand, 28705162 - 28705212
Alignment:
Q  8 gagtcaggattcgttgacatcaggtgtcaacgaattcgttaacaccaaatc 58  Q
    ||||||| || |||||||| |||||||||||| ||||||| ||||||||||    
T  28705162 gagtcagtatccgttgacaccaggtgtcaacggattcgtttacaccaaatc 28705212  T

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Target: chr5; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 58
Target Start/End: Complemental strand, 28705933 - 28705883
Alignment:
Q  8 gagtcaggattcgttgacatcaggtgtcaacgaattcgttaacaccaaatc 58  Q
    |||||||||| |||||||| |||||||||||| ||||||| |||| |||||    
T  28705933 gagtcaggatccgttgacaccaggtgtcaacggattcgttgacactaaatc 28705883  T

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Target: chr5; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 7 - 81
Target Start/End: Complemental strand, 34600886 - 34600812
Alignment:
Q  7 agagtcaggattcgttgacatcaggtgtcaacgaattcgttaacaccaaatcacatccattgatttaatttaatc 81  Q
    ||||| ||||| | |||||| ||||||| |||||||||||| |||||||||| || || || |||| ||||||||    
T  34600886 agagttaggatcccttgacaccaggtgttaacgaattcgttgacaccaaatcgcaaccgtttattttatttaatc 34600812  T

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Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 23995298 - 23995346
Alignment:
Q  1 atatatagagtcaggattcgttgacatcaggtgtcaacgaattcgttaacac 52  Q
    ||||||||||||||||| |||||||||||||||   ||||||||||| ||||    
T  23995298 atatatagagtcaggatccgttgacatcaggtg---acgaattcgttgacac 23995346  T

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Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 89
Target Start/End: Complemental strand, 3259822 - 3259782
Alignment:
Q  49 acaccaaatcacatccattgatttaatttaatccaaaggct 89  Q
    |||||||||| |||||||| |||| ||||||||||||||||    
T  3259822 acaccaaatctcatccattcattttatttaatccaaaggct 3259782  T

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Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 89
Target Start/End: Complemental strand, 4737817 - 4737777
Alignment:
Q  49 acaccaaatcacatccattgatttaatttaatccaaaggct 89  Q
    |||||||||| |||||||| |||| ||||||||||||||||    
T  4737817 acaccaaatctcatccattcattttatttaatccaaaggct 4737777  T

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Target: scaffold0012 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 8 - 72
Target Start/End: Original strand, 180839 - 180902
Alignment:
Q  8 gagtcaggattcgttgacatcaggtgtcaacgaattcgttaacaccaaatcacatccattgattt 72  Q
    ||||||||||||||||||| |||||||||||| |||||||||||||||||||  |||||| ||||    
T  180839 gagtcaggattcgttgaca-caggtgtcaacggattcgttaacaccaaatcatgtccattcattt 180902  T

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Target: scaffold0176 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 8 - 66
Target Start/End: Original strand, 26589 - 26647
Alignment:
Q  8 gagtcaggattcgttgacatcaggtgtcaacgaattcgttaacaccaaatcacatccat 66  Q
    |||||||||| |||||||| |||||||||||| ||||||| ||||||||||||| ||||    
T  26589 gagtcaggatccgttgacaccaggtgtcaacggattcgttgacaccaaatcacaaccat 26647  T

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Target: scaffold0002 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 428963 - 428906
Alignment:
Q  1 atatatagagtcaggattcgttgacatcaggtgtcaacgaattcgttaacaccaaatc 58  Q
    ||||||||||||||||| |||||||| | ||| |||||||||||||| ||||||||||    
T  428963 atatatagagtcaggatccgttgacacccggtatcaacgaattcgttgacaccaaatc 428906  T

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Target: scaffold0085 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 22132 - 22076
Alignment:
Q  1 atatatagagtcaggattcgttgacatcaggtgtcaacgaattcgttaacaccaaat 57  Q
    |||||||||| |||||| |||||||| |||||||||||| ||||||| |||||||||    
T  22132 atatatagagacaggatccgttgacaccaggtgtcaacggattcgttgacaccaaat 22076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 58
Target Start/End: Complemental strand, 15900 - 15863
Alignment:
Q  21 ttgacatcaggtgtcaacgaattcgttaacaccaaatc 58  Q
    |||||| |||||||||||||||||||| ||||||||||    
T  15900 ttgacaccaggtgtcaacgaattcgttgacaccaaatc 15863  T

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Target: scaffold0164 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0164
Description:

Target: scaffold0164; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 11661 - 11718
Alignment:
Q  1 atatatagagtcaggattcgttgacatcaggtgtcaacgaattcgttaacaccaaatc 58  Q
    ||||||| ||||||||| |||||||||||| | |||||||||| ||| ||||||||||    
T  11661 atatatatagtcaggatccgttgacatcagatttcaacgaattagttgacaccaaatc 11718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0418 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0418
Description:

Target: scaffold0418; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 56
Target Start/End: Complemental strand, 6939 - 6891
Alignment:
Q  8 gagtcaggattcgttgacatcaggtgtcaacgaattcgttaacaccaaa 56  Q
    |||||||||| |||||||| ||||||||||| |||||||| ||||||||    
T  6939 gagtcaggatccgttgacaccaggtgtcaacaaattcgttgacaccaaa 6891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1207 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold1207
Description:

Target: scaffold1207; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 58
Target Start/End: Original strand, 1596 - 1634
Alignment:
Q  20 gttgacatcaggtgtcaacgaattcgttaacaccaaatc 58  Q
    ||||||| |||||||||||||||||||| ||||||||||    
T  1596 gttgacaccaggtgtcaacgaattcgttgacaccaaatc 1634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 58
Target Start/End: Complemental strand, 8346 - 8296
Alignment:
Q  8 gagtcaggattcgttgacatcaggtgtcaacgaattcgttaacaccaaatc 58  Q
    |||| ||||| | |||||| |||||||||||| ||||||||||||||||||    
T  8346 gagttaggatccattgacaccaggtgtcaacgtattcgttaacaccaaatc 8296  T

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Target: scaffold1213 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold1213
Description:

Target: scaffold1213; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 61
Target Start/End: Original strand, 1893 - 1946
Alignment:
Q  8 gagtcaggattcgttgacatcaggtgtcaacgaattcgttaacaccaaatcaca 61  Q
    |||||| ||| |||||||| ||| |||||||| ||||||| |||||||||||||    
T  1893 gagtcaagatccgttgacagcagatgtcaacggattcgttgacaccaaatcaca 1946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0504 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0504
Description:

Target: scaffold0504; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 57
Target Start/End: Complemental strand, 5434 - 5385
Alignment:
Q  8 gagtcaggattcgttgacatcaggtgtcaacgaattcgttaacaccaaat 57  Q
    |||||||||| |||||||| |||||||||||| ||| ||| |||||||||    
T  5434 gagtcaggatccgttgacaccaggtgtcaacggatttgttgacaccaaat 5385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0096 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 57
Target Start/End: Original strand, 39893 - 39942
Alignment:
Q  8 gagtcaggattcgttgacatcaggtgtcaacgaattcgttaacaccaaat 57  Q
    ||||||| || |||||||| |||||||||||| ||||||| |||||||||    
T  39893 gagtcagaatccgttgacaccaggtgtcaacggattcgttgacaccaaat 39942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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