View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21163_low_53 (Length: 299)
Name: NF21163_low_53
Description: NF21163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21163_low_53 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 89; Significance: 6e-43; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 66 - 186
Target Start/End: Original strand, 5464057 - 5464177
Alignment:
| Q |
66 |
acctgtgagtccaaaaacacacttgtcatgtggcaatggacaaaacatatcatcaatcaaatttgctagctttcgcacaccagtaggatcttgtgaaaat |
165 |
Q |
| |
|
||||||||||||||||||||| |||||||||| | ||||||||| ||||||||||||||||||||||||||| |||| ||| ||||||||||||||||| |
|
|
| T |
5464057 |
acctgtgagtccaaaaacacatctgtcatgtggtattggacaaaaaatatcatcaatcaaatttgctagctttggcactccactaggatcttgtgaaaat |
5464156 |
T |
|
| Q |
166 |
taccgcgttggaagctgtcaa |
186 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
5464157 |
taccgcgttggaagctgtcaa |
5464177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 185
Target Start/End: Original strand, 5455326 - 5455512
Alignment:
| Q |
1 |
ctgatatttatgagtggcagtgaa-tgttgttagttatcagatgcatgcttctggtaa-gttagcaaacctgtgagtccaaaaacacacttgtcatgtgg |
98 |
Q |
| |
|
|||||||||||||||||||| || | ||||||||||||| ||||| ||||||||||| |||| | |||||||||||||||| |||| ||||||||||| |
|
|
| T |
5455326 |
ctgatatttatgagtggcagccaaatcttgttagttatcaaatgcaagcttctggtaaagttaagatacctgtgagtccaaaagcacatttgtcatgtgg |
5455425 |
T |
|
| Q |
99 |
caatggacaaaacatatcatcaatcaaatttgctagctttcgcacaccagtaggatcttgtgaaaattaccgcgttggaagctgtca |
185 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||| |||| ||||| || ||||||| ||| ||||||| ||||||||||| |
|
|
| T |
5455426 |
tcctggacaaaaaatatcatcaatcaaatttgctagctttggcactccagtcgggtcttgtggaaactaccgcgaaggaagctgtca |
5455512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 183 - 268
Target Start/End: Original strand, 5464202 - 5464288
Alignment:
| Q |
183 |
tcaaaaggtacttttacttctttttctaggatggtttcttttttatagt-gatagggtgctatagacaaacacaaattagacacatg |
268 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| ||||||||||||| |
|
|
| T |
5464202 |
tcaaaaggtatttttacttctttttctaggatggtttcttttttatagtggatagggtgttatagacaaacactaattagacacatg |
5464288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 203 - 268
Target Start/End: Original strand, 5455562 - 5455628
Alignment:
| Q |
203 |
tttttctaggatggtttcttttttatagt-gatagggtgctatagacaaacacaaattagacacatg |
268 |
Q |
| |
|
|||||||||||||||||||||||||| || ||||||||||| ||| || |||| |||| |||||||| |
|
|
| T |
5455562 |
tttttctaggatggtttcttttttattgtggatagggtgctctagccagacactaatttgacacatg |
5455628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 3 - 160
Target Start/End: Complemental strand, 42986441 - 42986282
Alignment:
| Q |
3 |
gatatttatgagtggcagtgaa-tgttgttagttatcagatgcatgcttctggtaagt-tagcaaacctgtgagtccaaaaacacacttgtcatgtggca |
100 |
Q |
| |
|
|||||||||||||||||| || | || | |||||||||||||| ||||||| || || |||||||||||| |||||| |||| || || |||||| |
|
|
| T |
42986441 |
gatatttatgagtggcagccaaatcttataagttatcagatgcaaacttctggcaaaactaacaaacctgtgagaccaaaagcacatttatcttgtggcc |
42986342 |
T |
|
| Q |
101 |
atggacaaaacatatcatcaatcaaatttgctagctttcgcacaccagtaggatcttgtg |
160 |
Q |
| |
|
|||||| || |||||||| |||||||| ||||||||| | || |||||||| ||||||| |
|
|
| T |
42986341 |
ctggacagaaaatatcatcgatcaaattcgctagctttggtactccagtagggtcttgtg |
42986282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University