View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21163_low_55 (Length: 285)
Name: NF21163_low_55
Description: NF21163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21163_low_55 |
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Alignment Details
Target: chr4 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 266
Target Start/End: Complemental strand, 43294610 - 43294345
Alignment:
| Q |
1 |
tctttaatctgtatgctgaaaatcgacttcgtttactttatcagtgtccaatatatataactattacacattcttattccctttctatcttagtttctat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43294610 |
tctttaatctgtatgctgaaaatcgacttcgtttactttatcagtgtccaatatatataactattacacattcttattccctttctatcttagtttctat |
43294511 |
T |
|
| Q |
101 |
atctttaccactttcaccatataatatattattcttcgtatcaaatcattacttgcctagtgtcgcaactcgcatgcaacttatacttgagttatagtga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43294510 |
atctttaccactttcaccatataatatattattcttcgtatcaaatcattacttgcctagtgtcgcaactcgcatgcaacttatacttgagttatagtga |
43294411 |
T |
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| Q |
201 |
ctagtgagtagtaaggataagaatataggtgttaagtttatattgtgggaataactctcatcaatc |
266 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43294410 |
ctagtgagtagtaaggataagaatataggtgttaagtttatattgtgggaataactctcatcaatc |
43294345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 266
Target Start/End: Original strand, 44026342 - 44026607
Alignment:
| Q |
1 |
tctttaatctgtatgctgaaaatcgacttcgtttactttatcagtgtccaatatatataactattacacattcttattccctttctatcttagtttctat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44026342 |
tctttaatctgtatgctgaaaatcgacttcgtttactttatcagtgtccaatatatataactattacacattcttattccctttctatcttagtttctat |
44026441 |
T |
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| Q |
101 |
atctttaccactttcaccatataatatattattcttcgtatcaaatcattacttgcctagtgtcgcaactcgcatgcaacttatacttgagttatagtga |
200 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44026442 |
atctttaccactttcaccatataatataatattcttcgtatcaaatcattacttgcctagtgtcgcaactcgcatgcaacttatacttgagttatagtga |
44026541 |
T |
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| Q |
201 |
ctagtgagtagtaaggataagaatataggtgttaagtttatattgtgggaataactctcatcaatc |
266 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44026542 |
ctagtgagtagtaaggataagaatataggtgttaagtttatattgtgggaataactctcatcaatc |
44026607 |
T |
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