View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21163_low_6 (Length: 579)
Name: NF21163_low_6
Description: NF21163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21163_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 314; Significance: 1e-177; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 256 - 569
Target Start/End: Original strand, 476144 - 476457
Alignment:
| Q |
256 |
tacactcttcactaataaactagcttcatcttttacaccactcttagtctatgttgatgatagagtgagttctcacaggaaacaatttagtggggaattt |
355 |
Q |
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| T |
476144 |
tacactcttcactaataaactagcttcatcttttacaccactcttagtctatgttgatgatagagtgagttctcacaggaaacaatttagtggggaattt |
476243 |
T |
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| Q |
356 |
gaagcaaccaaaggaaaatttcaagatgattttgagatcaaggactttggatttttaaaattcttcctaggaacagaaactgtacattcagaacaagata |
455 |
Q |
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| T |
476244 |
gaagcaaccaaaggaaaatttcaagatgattttgagatcaaggactttggatttttaaaattcttcctaggaacagaaactgtacattcagaacaagata |
476343 |
T |
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| Q |
456 |
tcactttgtgtcaaagacagtattttctatatttattaactaagacaaataacttggtcttcaagccatccagttttcccaatagatcctattcaaggat |
555 |
Q |
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| T |
476344 |
tcactttgtgtcaaagacagtattttctatatttattaactaagacaaataacttggtcttcaagccatccagttttcccaatagatcctattcaaggat |
476443 |
T |
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| Q |
556 |
tacacaatgatgat |
569 |
Q |
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| T |
476444 |
tacacaatgatgat |
476457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 245; E-Value: 1e-135
Query Start/End: Original strand, 1 - 262
Target Start/End: Original strand, 475856 - 476119
Alignment:
| Q |
1 |
atatagctgaagagaataacagttgaagttacttttttactctttgtcatttatgtattcatttattgtgagagaaatacaaaattaagagcataa--aa |
98 |
Q |
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| T |
475856 |
atatagctgaagagaataacagttgaagttacttttttactctttgtcatttatgtattcatttattgtgagagaaatacaaacttaagagcataatcaa |
475955 |
T |
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| Q |
99 |
tggttaattatgagacaaatgaaatttttaaaatgaatcttcaagaaaggtaaattataaaatttttagctgatgaatatatattacactgttgattgaa |
198 |
Q |
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| T |
475956 |
tggttaattatgagacaaatgaaatttttaaaatgaatcttcaagaaaggtaaattataaattttttagctgatgaatatatattacactgttgattgaa |
476055 |
T |
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| Q |
199 |
aaaactgtgttaaatttaaagaatgaaaaattgtatcaatttctctatacaataggctacactc |
262 |
Q |
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| T |
476056 |
aaaactgtgttaaatttaaagaatgaaaaattgtatcaatttctctatacaataggctacactc |
476119 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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