View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21163_low_66 (Length: 250)

Name: NF21163_low_66
Description: NF21163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21163_low_66
NF21163_low_66
[»] scaffold0288 (1 HSPs)
scaffold0288 (10-250)||(1694-1944)
[»] chr6 (4 HSPs)
chr6 (10-250)||(4618936-4619186)
chr6 (108-215)||(4603782-4603888)
chr6 (157-216)||(4565697-4565756)
chr6 (157-210)||(4594691-4594744)


Alignment Details
Target: scaffold0288 (Bit Score: 138; Significance: 3e-72; HSPs: 1)
Name: scaffold0288
Description:

Target: scaffold0288; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 10 - 250
Target Start/End: Original strand, 1694 - 1944
Alignment:
Q  10 acacagatacaggtaattacaattatcggtatggacgtgtcagtgtaagtgtcgtattcattgtccttgtttgtatgttccggcttcatttcatt----- 104  Q
    ||||||||||||||||||| |||||| |||||||||||||| |||||||||||||||||||||||||| |||||||||  || ||||||||||||         
T  1694 acacagatacaggtaattataattattggtatggacgtgtccgtgtaagtgtcgtattcattgtccttatttgtatgtcacgacttcatttcattttcat 1793  T
Q  105 -gcaaaattaataatt---gagttgcatggtacttatttccttttaatagaatctcaacctcccagattttatctgcttggatttc-tttgtattttcca 199  Q
     ||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| |||||||||||||    
T  1794 tgcaaaattaataataatagagttgcatggtacttatttccttttaatagaatctcaacctcccagattttatttgtttggatttcttttgtattttcca 1893  T
Q  200 attttatagcattgtccnnnnnnnncttctattaaagcacatgcttatcac 250  Q
    |||||||||| ||||||        ||||||||||||||||||||||||||    
T  1894 attttatagcgttgtccttttttttcttctattaaagcacatgcttatcac 1944  T

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Target: chr6 (Bit Score: 138; Significance: 3e-72; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 10 - 250
Target Start/End: Complemental strand, 4619186 - 4618936
Alignment:
Q  10 acacagatacaggtaattacaattatcggtatggacgtgtcagtgtaagtgtcgtattcattgtccttgtttgtatgttccggcttcatttcatt----- 104  Q
    ||||||||||||||||||| |||||| |||||||||||||| |||||||||||||||||||||||||| |||||||||  || ||||||||||||         
T  4619186 acacagatacaggtaattataattattggtatggacgtgtccgtgtaagtgtcgtattcattgtccttatttgtatgtcacgacttcatttcattttcat 4619087  T
Q  105 -gcaaaattaataatt---gagttgcatggtacttatttccttttaatagaatctcaacctcccagattttatctgcttggatttc-tttgtattttcca 199  Q
     ||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| |||||||||||||    
T  4619086 tgcaaaattaataataatagagttgcatggtacttatttccttttaatagaatctcaacctcccagattttatttgtttggatttcttttgtattttcca 4618987  T
Q  200 attttatagcattgtccnnnnnnnncttctattaaagcacatgcttatcac 250  Q
    |||||||||| ||||||        ||||||||||||||||||||||||||    
T  4618986 attttatagcgttgtccttttttttcttctattaaagcacatgcttatcac 4618936  T

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Target: chr6; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 108 - 215
Target Start/End: Complemental strand, 4603888 - 4603782
Alignment:
Q  108 aaattaataattgagttgcatggtacttatttccttttaatagaatctcaacctcccagattttatctgcttggatttctttgtattttccaattttata 207  Q
    ||||||| |||||||||| |||  |||||||||  |||  ||||||||||||||||||||||||||||  ||||||||||||||||||||||||||| ||    
T  4603888 aaattaaaaattgagttggatga-acttatttcactttgttagaatctcaacctcccagattttatctctttggatttctttgtattttccaattttgta 4603790  T
Q  208 gcattgtc 215  Q
    ||||||||    
T  4603789 gcattgtc 4603782  T

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Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 157 - 216
Target Start/End: Complemental strand, 4565756 - 4565697
Alignment:
Q  157 aacctcccagattttatctgcttggatttctttgtattttccaattttatagcattgtcc 216  Q
    ||||||||||| |||||||| |||||||||||| |||||| ||||||| |||||||||||    
T  4565756 aacctcccagaatttatctgtttggatttctttatatttttcaattttgtagcattgtcc 4565697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 157 - 210
Target Start/End: Complemental strand, 4594744 - 4594691
Alignment:
Q  157 aacctcccagattttatctgcttggatttctttgtattttccaattttatagca 210  Q
    ||||| |||||||||| ||| |||||||||||| |||||| |||||||||||||    
T  4594744 aaccttccagattttaactgtttggatttctttatatttttcaattttatagca 4594691  T

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