View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21163_low_68 (Length: 249)
Name: NF21163_low_68
Description: NF21163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21163_low_68 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 226; Significance: 1e-125; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 40709190 - 40708961
Alignment:
| Q |
1 |
ccttatcccccttgtttaacgttaacctggctcgtaaggcattcttgcaatcatcaaccccctttgtgtactcgtcctgacaaatacgtatgctcaacgc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40709190 |
ccttatcccccttgtttaacgttaacctggctcgtaaggcattcttgcaatcatcaaccccctttgtgtactcgtcctgacaaatacgtatgctcaacgc |
40709091 |
T |
|
| Q |
101 |
atcacctttgatgcaaggtgttggaagggccgttcgtcggtcacattatgtcctgccaaagcgacagcaaacgatttggttggtggctgcacctgtacca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40709090 |
atcacctttgatgcaaggtgttggaagggccgttcgtcggtcacattatgtcctgctaaagcgacagcaaacgatttggttggtggctgcacctgtacca |
40708991 |
T |
|
| Q |
201 |
tggctgaagacactgtgtcttacacacaca |
230 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
40708990 |
tggctgaagacactgtgtcttacacacaca |
40708961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University