View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21163_low_7 (Length: 560)

Name: NF21163_low_7
Description: NF21163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21163_low_7
NF21163_low_7
[»] chr4 (51 HSPs)
chr4 (163-514)||(24420086-24420436)
chr4 (163-382)||(24471190-24471402)
chr4 (178-506)||(24475730-24476065)
chr4 (165-396)||(24406228-24406467)
chr4 (420-514)||(24471408-24471502)
chr4 (19-96)||(24420503-24420580)
chr4 (19-96)||(24471046-24471123)
chr4 (165-253)||(24406481-24406569)
chr4 (165-272)||(24420423-24420530)
chr4 (165-272)||(24471096-24471203)
chr4 (19-96)||(24476805-24476882)
chr4 (165-272)||(24420807-24420914)
chr4 (165-272)||(24421095-24421202)
chr4 (30-96)||(24420887-24420953)
chr4 (36-96)||(24406542-24406602)
chr4 (177-272)||(24420519-24420614)
chr4 (165-268)||(24470473-24470576)
chr4 (33-96)||(24470773-24470836)
chr4 (177-272)||(24471012-24471107)
chr4 (165-268)||(24421243-24421346)
chr4 (27-96)||(24420791-24420860)
chr4 (19-95)||(24470519-24470595)
chr4 (165-268)||(24470377-24470480)
chr4 (165-256)||(24470569-24470660)
chr4 (168-262)||(24470668-24470762)
chr4 (171-272)||(24420903-24421004)
chr4 (165-262)||(24470809-24470905)
chr4 (171-256)||(24477074-24477159)
chr4 (27-95)||(24421320-24421388)
chr4 (165-265)||(24470521-24470621)
chr4 (165-272)||(24476731-24476832)
chr4 (168-268)||(24477476-24477576)
chr4 (166-206)||(24481447-24481487)
chr4 (210-265)||(24420622-24420677)
chr4 (30-73)||(24420670-24420713)
chr4 (21-96)||(24470617-24470692)
chr4 (165-272)||(24470713-24470820)
chr4 (30-73)||(24477065-24477108)
chr4 (163-258)||(24477630-24477725)
chr4 (214-272)||(24406558-24406616)
chr4 (168-262)||(24420721-24420815)
chr4 (19-93)||(24471142-24471216)
chr4 (19-96)||(24420407-24420484)
chr4 (168-265)||(24421294-24421391)
chr4 (168-265)||(24470332-24470429)
chr4 (163-271)||(24421192-24421300)
chr4 (27-95)||(24470335-24470403)
chr4 (163-271)||(24470615-24470723)
chr4 (177-265)||(24470916-24471004)
chr4 (165-265)||(24477431-24477531)
chr4 (25-73)||(24481513-24481561)
[»] scaffold0879 (5 HSPs)
scaffold0879 (165-272)||(4572-4679)
scaffold0879 (165-262)||(4524-4621)
scaffold0879 (165-268)||(4428-4531)
scaffold0879 (30-73)||(4821-4864)
scaffold0879 (171-265)||(4770-4864)
[»] chr2 (12 HSPs)
chr2 (165-264)||(41900272-41900371)
chr2 (165-255)||(41900089-41900179)
chr2 (21-88)||(41899872-41899939)
chr2 (165-247)||(41899953-41900035)
chr2 (19-82)||(41899830-41899893)
chr2 (165-272)||(41899832-41899939)
chr2 (19-63)||(41900089-41900133)
chr2 (42-96)||(41900584-41900638)
chr2 (27-96)||(41900296-41900365)
chr2 (210-271)||(41900553-41900614)
chr2 (184-272)||(41900360-41900448)
chr2 (165-265)||(41900511-41900611)
[»] chr1 (7 HSPs)
chr1 (210-268)||(11879349-11879407)
chr1 (233-272)||(11905000-11905039)
chr1 (234-272)||(11881952-11881990)
chr1 (234-272)||(11891186-11891224)
chr1 (211-265)||(11902063-11902117)
chr1 (180-253)||(11879484-11879557)
chr1 (189-265)||(11879445-11879521)


Alignment Details
Target: chr4 (Bit Score: 304; Significance: 1e-171; HSPs: 51)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 163 - 514
Target Start/End: Complemental strand, 24420436 - 24420086
Alignment:
Q  163 catcacctcctccaccatatgtctataagtcaccgccacctccttcgccttcaccaccgcctccttatatttacaagtctccacctccaccatctccatc 262  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24420436 catcacctcctccaccatatggctataagtcaccgccacctccttcgccttcaccaccgcctccttatatttacaagtctccacctccaccatctccatc 24420337  T
Q  263 acctcctccatatcatccctaccactacaactcacccccgcctcccatctattaagcttccggctattatttgtnnnnnnnntcaatgaattatattcag 362  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||         ||||||||||||||||||    
T  24420336 acctcctccatatcatccctacctctacaactcacccccgcctcccatctattaagcttccggctattatttg-aaaaaatttcaatgaattatattcag 24420238  T
Q  363 cattgttgtggttaatttgtattcaagcttttgttaataaaaaagtctatgctttacagtgaattaagagccttattttgattcaaatgcatctgtgcat 462  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24420237 cattgttgtggttaatttgtattcaatcttttgttaataaaaaagtctatgctttacagtgaattaagagccttattttgattcaaatgcatctgtgcat 24420138  T
Q  463 gcatggtgttaattcataagtttgtatttatttatctcctttagttgttttt 514  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  24420137 gcatggtgttaattcataagtttgtatttatttttctcctttagttgttttt 24420086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 163 - 382
Target Start/End: Original strand, 24471190 - 24471402
Alignment:
Q  163 catcacctcctccaccatatgtctataagtcaccgccacctccttcgccttcaccaccgcctccttatatttacaagtctccacctccaccatctccatc 262  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||      ||||||||||||||||    
T  24471190 catcacctcctccaccatatgtctataggtcaccgccacctccttcgccttcaccaccgcctccttatatttacaagt------ctccaccatctccatc 24471283  T
Q  263 acctcctccatatcatccctaccactacaactcacccccgcctcccatctattaagcttccggctattatttgtnnnnnnnntcaatgaattatattcag 362  Q
    ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| |||||         ||||||||||||||||||    
T  24471284 acctcctccatatcatccctacctctacagctcacccccgcctcccatctattaagcttccggctatcatttg-aaattttttcaatgaattatattcag 24471382  T
Q  363 cattgttgtggttaatttgt 382  Q
    ||||||||||||||||||||    
T  24471383 cattgttgtggttaatttgt 24471402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 178 - 506
Target Start/End: Complemental strand, 24476065 - 24475730
Alignment:
Q  178 catatgtctataagtcaccgccacctccttcgccttcaccaccgcctccttatatttacaagtctccacctccaccatctccatcacctcctccatatca 277  Q
    ||||||||||||||||||||||||||||| | ||||||||||||||||||| |||||| |||||||| ||||| |||||||||| ||||||||||| |||    
T  24476065 catatgtctataagtcaccgccacctcctaccccttcaccaccgcctccttgtatttagaagtctcctcctcccccatctccataacctcctccatctca 24475966  T
Q  278 tccctaccactacaactcacccccgcctcccatctattaa-gcttccggcta---ttatttgtnnnnnnnntcaatgaattatattcagcattgttgtgg 373  Q
    | || | | |||||||||||||||||||||| |||||||| |||||||||||   |||||||         |||| |||||||||||||||||||| |||    
T  24475965 ttccgatctctacaactcacccccgcctcccgtctattaaggcttccggctatagttatttg-aaattttttcaaagaattatattcagcattgttctgg 24475867  T
Q  374 ttaatttgtattcaagcttttgttaataaaa-aagtctatgctttacagtgaattaagagcc---ttattttgattcaaatgcatctgtgcatgcatggt 469  Q
    |||||||||||  |||||||||| ||||||| || | ||| |  |||| |||||||||||||   |||||| | ||||| ||||  |||||||| |||||    
T  24475866 ttaatttgtatcgaagcttttgtgaataaaagaattttatacactacaatgaattaagagcctaattatttcggttcaagtgcaattgtgcatgtatggt 24475767  T
Q  470 gttaattcataagtttgtatttatttatctcctttag 506  Q
    ||||||||||||||  ||||||||  |||||||||||    
T  24475766 gttaattcataagtcagtatttatcaatctcctttag 24475730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 165 - 396
Target Start/End: Complemental strand, 24406467 - 24406228
Alignment:
Q  165 tcacctcctccaccatatgtctataagtcaccgccacctccttcgccttcaccaccgcctccttatatttacaagtctccacctc------caccatctc 258  Q
    |||||||||||||| ||||||| ||||||||| |||||||||||||||||||| || ||||||||||| |||||| |||||||||      |||||||||    
T  24406467 tcacctcctccaccttatgtctttaagtcaccaccacctccttcgccttcaccgccacctccttatatctacaagactccacctccacctccaccatctc 24406368  T
Q  259 catcacctcctccatatcatccctaccactacaactcacccccgcctcccatctattaagcttccggctat---tatttgtnnnnnnnntcaatgaatta 355  Q
    | ||||||||||||||||||||||||| ||| |||| |||||| ||||||   |||||||||| ||| |||    | |||         |||||||||||    
T  24406367 cttcacctcctccatatcatccctaccgctataactaacccccacctcccgcgtattaagctttcggatataacaacttg-aaattttttcaatgaatta 24406269  T
Q  356 tattcagcattgttgtggttaatttgtattcaagcttttgt 396  Q
    | |||| ||||||||||||||||||||||| ||||||||||    
T  24406268 tgttcaacattgttgtggttaatttgtatttaagcttttgt 24406228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 420 - 514
Target Start/End: Original strand, 24471408 - 24471502
Alignment:
Q  420 agtgaattaagagccttattttgattcaaatgcatctgtgcatgcatggtgttaattcataagtttgtatttatttatctcctttagttgttttt 514  Q
    |||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  24471408 agtgaattaatagccttattttgattcaaatgcatctgtgcatgtatggtgttaattcataagtttgtgtttatttatctcctttagttgttttt 24471502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 19 - 96
Target Start/End: Complemental strand, 24420580 - 24420503
Alignment:
Q  19 cttcaccccctcctccatatgtttacaaatctcctcccccaccatctccttcaccccctccaccctatgtctataagt 96  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24420580 cttcaccccctcctccatatgtttacaaatctcctcccccaccatctccttcaccccctccaccctatgtctataagt 24420503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 19 - 96
Target Start/End: Original strand, 24471046 - 24471123
Alignment:
Q  19 cttcaccccctcctccatatgtttacaaatctcctcccccaccatctccttcaccccctccaccctatgtctataagt 96  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||    
T  24471046 cttcaccccctcctccatatgtttacaaatctcctcccccaccatctccttcacctcctccaccctatgtccataagt 24471123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 165 - 253
Target Start/End: Complemental strand, 24406569 - 24406481
Alignment:
Q  165 tcacctcctccaccatatgtctataagtcaccgccacctccttcgccttcaccaccgcctccttatatttacaagtctccacctccacc 253  Q
    |||||||||||||| ||||||| ||||||||| |||||||||||||||||||| || ||||||||||| |||||| |||||||||||||    
T  24406569 tcacctcctccaccttatgtctttaagtcaccaccacctccttcgccttcaccgccacctccttatatctacaagactccacctccacc 24406481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 165 - 272
Target Start/End: Complemental strand, 24420530 - 24420423
Alignment:
Q  165 tcacctcctccaccatatgtctataagtcaccgccacctccttcgccttcaccaccgcctccttatatttacaagtctccacctccaccatctccatcac 264  Q
    ||||| |||||||| ||||||||||||||||| |||||||||||  |||||||||| ||||| ||    ||||| |||||||||||||| ||||||||||    
T  24420530 tcaccccctccaccctatgtctataagtcacctccacctccttcagcttcaccacctcctccatactactacaaatctccacctccaccttctccatcac 24420431  T
Q  265 ctcctcca 272  Q
    ||||||||    
T  24420430 ctcctcca 24420423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 165 - 272
Target Start/End: Original strand, 24471096 - 24471203
Alignment:
Q  165 tcacctcctccaccatatgtctataagtcaccgccacctccttcgccttcaccaccgcctccttatatttacaagtctccacctccaccatctccatcac 264  Q
    |||||||||||||| |||||| |||||||||| |||||||||||  |||||||||| ||||| ||    ||||| |||||||||||||| ||||||||||    
T  24471096 tcacctcctccaccctatgtccataagtcacctccacctccttcagcttcaccacctcctccatactactacaaatctccacctccaccttctccatcac 24471195  T
Q  265 ctcctcca 272  Q
    ||||||||    
T  24471196 ctcctcca 24471203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 19 - 96
Target Start/End: Complemental strand, 24476882 - 24476805
Alignment:
Q  19 cttcaccccctcctccatatgtttacaaatctcctcccccaccatctccttcaccccctccaccctatgtctataagt 96  Q
    |||||||||||||||||||||||||  ||||||| |||||||||||||||||||| || ||| |||||||||||||||    
T  24476882 cttcaccccctcctccatatgtttatgaatctccacccccaccatctccttcacctcccccatcctatgtctataagt 24476805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 165 - 272
Target Start/End: Complemental strand, 24420914 - 24420807
Alignment:
Q  165 tcacctcctccaccatatgtctataagtcaccgccacctccttcgccttcaccaccgcctccttatatttacaagtctccacctccaccatctccatcac 264  Q
    ||||| |||||||||||||| ||||||||||| ||||||||||| ||||| || || ||||| ||| |||||||||| ||||| |||||||| || || |    
T  24420914 tcaccccctccaccatatgtatataagtcaccaccacctccttccccttcccctcctcctccatatgtttacaagtccccacccccaccatcaccttctc 24420815  T
Q  265 ctcctcca 272  Q
    ||||||||    
T  24420814 ctcctcca 24420807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 165 - 272
Target Start/End: Complemental strand, 24421202 - 24421095
Alignment:
Q  165 tcacctcctccaccatatgtctataagtcaccgccacctccttcgccttcaccaccgcctccttatatttacaagtctccacctccaccatctccatcac 264  Q
    ||||||||||| ||||||||||| |||||||| ||||| || || || || ||||| ||||| |||||||||||||| ||||| |||||||| |||||||    
T  24421202 tcacctcctcctccatatgtctacaagtcaccaccaccaccatccccatctccaccacctccatatatttacaagtccccaccaccaccatccccatcac 24421103  T
Q  265 ctcctcca 272  Q
    | ||||||    
T  24421102 cccctcca 24421095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 30 - 96
Target Start/End: Complemental strand, 24420953 - 24420887
Alignment:
Q  30 cctccatatgtttacaaatctcctcccccaccatctccttcaccccctccaccctatgtctataagt 96  Q
    ||||||||||| ||||||||||| ||||||||||| ||||||||||||||||| ||||| |||||||    
T  24420953 cctccatatgtctacaaatctccacccccaccatcaccttcaccccctccaccatatgtatataagt 24420887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 36 - 96
Target Start/End: Complemental strand, 24406602 - 24406542
Alignment:
Q  36 tatgtttacaaatctcctcccccaccatctccttcaccccctccaccctatgtctataagt 96  Q
    ||||||||||||||||| |||||||||||||||||||| |||||||| ||||||| |||||    
T  24406602 tatgtttacaaatctccacccccaccatctccttcacctcctccaccttatgtctttaagt 24406542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 177 - 272
Target Start/End: Complemental strand, 24420614 - 24420519
Alignment:
Q  177 ccatatgtctataagtcaccgccacctccttcgccttcaccaccgcctccttatatttacaagtctccacctccaccatctccatcacctcctcca 272  Q
    ||||||||||||||||| || || |||||||| |||||||| || ||||| ||| ||||||| ||||| || ||||||||||| ||||| ||||||    
T  24420614 ccatatgtctataagtcccctcctcctccttctccttcaccccctcctccatatgtttacaaatctcctcccccaccatctccttcaccccctcca 24420519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 165 - 268
Target Start/End: Original strand, 24470473 - 24470576
Alignment:
Q  165 tcacctcctccaccatatgtctataagtcaccgccacctccttcgccttcaccaccgcctccttatatttacaagtctccacctccaccatctccatcac 264  Q
    |||||||| || || ||||| || |||||||| ||||||||||| |||||||| || ||||| ||| | |||||||| |||||||| |||||||| ||||    
T  24470473 tcacctcccccgccctatgtttacaagtcaccaccacctccttccccttcacctcctcctccatatgtctacaagtcaccacctcctccatctccttcac 24470572  T
Q  265 ctcc 268  Q
    ||||    
T  24470573 ctcc 24470576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 33 - 96
Target Start/End: Original strand, 24470773 - 24470836
Alignment:
Q  33 ccatatgtttacaaatctcctcccccaccatctccttcaccccctccaccctatgtctataagt 96  Q
    |||||||| ||||||||||| ||||||||||| ||||||||||||||||| ||||| |||||||    
T  24470773 ccatatgtctacaaatctccacccccaccatcaccttcaccccctccaccatatgtatataagt 24470836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 177 - 272
Target Start/End: Original strand, 24471012 - 24471107
Alignment:
Q  177 ccatatgtctataagtcaccgccacctccttcgccttcaccaccgcctccttatatttacaagtctccacctccaccatctccatcacctcctcca 272  Q
    ||||| ||||||||||| || || |||||||| |||||||| || ||||| ||| ||||||| ||||| || ||||||||||| ||||||||||||    
T  24471012 ccatacgtctataagtcccctcctcctccttctccttcaccccctcctccatatgtttacaaatctcctcccccaccatctccttcacctcctcca 24471107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 165 - 268
Target Start/End: Complemental strand, 24421346 - 24421243
Alignment:
Q  165 tcacctcctccaccatatgtctataagtcaccgccacctccttcgccttcaccaccgcctccttatatttacaagtctccacctccaccatctccatcac 264  Q
    |||||||| ||||||||||||||||||   || ||||| || || || |||||||| ||||| ||| | ||||||||||| ||||||||||| || ||||    
T  24421346 tcacctcccccaccatatgtctataagagtccaccaccaccctctccatcaccaccacctccatatgtctacaagtctcctcctccaccatcaccctcac 24421247  T
Q  265 ctcc 268  Q
    ||||    
T  24421246 ctcc 24421243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 27 - 96
Target Start/End: Complemental strand, 24420860 - 24420791
Alignment:
Q  27 cctcctccatatgtttacaaatctcctcccccaccatctccttcaccccctccaccctatgtctataagt 96  Q
    |||||||||||||||||||| || || ||||||||||| ||||| || |||||||||||| | |||||||    
T  24420860 cctcctccatatgtttacaagtccccacccccaccatcaccttctcctcctccaccctatatttataagt 24420791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 19 - 95
Target Start/End: Original strand, 24470519 - 24470595
Alignment:
Q  19 cttcaccccctcctccatatgtttacaaatctcctcccccaccatctccttcaccccctccaccctatgtctataag 95  Q
    ||||||| |||||||||||||| ||||| || || || || |||||||||||||| || ||||| ||||||||||||    
T  24470519 cttcacctcctcctccatatgtctacaagtcaccacctcctccatctccttcacctcccccaccatatgtctataag 24470595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 165 - 268
Target Start/End: Original strand, 24470377 - 24470480
Alignment:
Q  165 tcacctcctccaccatatgtctataagtcaccgccacctccttcgccttcaccaccgcctccttatatttacaagtctccacctccaccatctccatcac 264  Q
    |||||||| ||||||||||||||||||   || ||||| || || || |||||||| ||||| ||| | ||||||||||| ||||||||| | || ||||    
T  24470377 tcacctcccccaccatatgtctataagagtccaccaccaccctctccatcaccaccacctccatatgtctacaagtctcctcctccaccaacaccctcac 24470476  T
Q  265 ctcc 268  Q
    ||||    
T  24470477 ctcc 24470480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 165 - 256
Target Start/End: Original strand, 24470569 - 24470660
Alignment:
Q  165 tcacctcctccaccatatgtctataagtcaccgccacctccttcgccttcaccaccgcctccttatatttacaagtctccacctccaccatc 256  Q
    |||||||| ||||||||||||||||||   || ||||| || || || |||||||| ||||| ||| | ||||||||||| |||||||||||    
T  24470569 tcacctcccccaccatatgtctataagagtccaccaccaccctctccatcaccaccacctccatatgtctacaagtctcctcctccaccatc 24470660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 168 - 262
Target Start/End: Original strand, 24470668 - 24470762
Alignment:
Q  168 cctcctccaccatatgtctataagtcaccgccacctccttcgccttcaccaccgcctccttatatttacaagtctccacctccaccatctccatc 262  Q
    ||||| ||||| ||| | |||||||| || |||||||| || |||||||| || ||||| ||| | |||||||| |||||||||||||| |||||    
T  24470668 cctcccccaccctatatttataagtcgccaccacctccatctccttcacctcctcctccatatgtctacaagtcaccacctccaccatccccatc 24470762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 171 - 272
Target Start/End: Complemental strand, 24421004 - 24420903
Alignment:
Q  171 cctccaccatatgtctataagtcaccgccacctccttcgccttcaccaccgcctccttatatttacaagtctccacctccaccatctccatcacctcctc 270  Q
    ||||||||||||||||| |||||||| || || || || || || ||||| ||||| ||| | ||||| |||||||| |||||||| || ||||| ||||    
T  24421004 cctccaccatatgtctacaagtcaccacctccaccatccccatctccaccacctccatatgtctacaaatctccacccccaccatcaccttcaccccctc 24420905  T
Q  271 ca 272  Q
    ||    
T  24420904 ca 24420903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 165 - 262
Target Start/End: Original strand, 24470809 - 24470905
Alignment:
Q  165 tcacctcctccaccatatgtctataagtcaccgccacctccttcgccttcaccaccgcctccttatatttacaagtctccacctccaccatctccatc 262  Q
    ||||| |||||||||||||| ||||||||||| || ||||| || || || || || || || ||| |||||||||| ||||||||||| ||||||||    
T  24470809 tcaccccctccaccatatgtatataagtcaccacctcctccatctccctctcctcc-ccaccatatgtttacaagtcaccacctccaccgtctccatc 24470905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 171 - 256
Target Start/End: Complemental strand, 24477159 - 24477074
Alignment:
Q  171 cctccaccatatgtctataagtcaccgccacctccttcgccttcaccaccgcctccttatatttacaagtctccacctccaccatc 256  Q
    ||||| ||||||||||||||| |||| || ||||| || || || ||||| ||||| ||| ||||||| |||||||| ||||||||    
T  24477159 cctcctccatatgtctataaggcaccacctcctccatctccatccccaccacctccatatgtttacaaatctccacccccaccatc 24477074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 27 - 95
Target Start/End: Complemental strand, 24421388 - 24421320
Alignment:
Q  27 cctcctccatatgtttacaaatctcctcccccaccatctccttcaccccctccaccctatgtctataag 95  Q
    |||||||||||||| ||||| || || || || |||||||||||||| || ||||| ||||||||||||    
T  24421388 cctcctccatatgtctacaagtcaccacctcctccatctccttcacctcccccaccatatgtctataag 24421320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 165 - 265
Target Start/End: Original strand, 24470521 - 24470621
Alignment:
Q  165 tcacctcctccaccatatgtctataagtcaccgccacctccttcgccttcaccaccgcctccttatatttacaagtctccacctccaccatctccatcac 264  Q
    ||||||||||| ||||||||||| |||||||| || ||||| || |||||||| || || || ||| | || |||  |||||| ||||| ||||||||||    
T  24470521 tcacctcctcctccatatgtctacaagtcaccacctcctccatctccttcacctcccccaccatatgtctataagagtccaccaccaccctctccatcac 24470620  T
Q  265 c 265  Q
    |    
T  24470621 c 24470621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 165 - 272
Target Start/End: Complemental strand, 24476832 - 24476731
Alignment:
Q  165 tcacctcctccaccatatgtctataagtcaccgccacctccttcgccttcaccaccgcctccttatatttacaagtctccacctccaccatctccatcac 264  Q
    |||||||| ||| | ||||||||||||||||  |||||||||||      |||||| |||||| |    ||||| |||||||||||||| ||||||||||    
T  24476832 tcacctcccccatcctatgtctataagtcacatccacctccttc------accacctcctcctgactactacaaatctccacctccaccttctccatcac 24476739  T
Q  265 ctcctcca 272  Q
    ||||||||    
T  24476738 ctcctcca 24476731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 168 - 268
Target Start/End: Complemental strand, 24477576 - 24477476
Alignment:
Q  168 cctcctccaccatatgtctataagtcaccgccacctccttcgccttcaccaccgcctccttatatttacaagtctccacctccaccatctccatcacctc 267  Q
    ||||| ||||||||||||||||||   || ||||| || || || ||||| || ||||| ||| | |||||||| |||||||| |||||||| |||||||    
T  24477576 cctcccccaccatatgtctataagagtccaccaccaccatctccctcacctccacctccatatgtctacaagtcaccacctcctccatctccttcacctc 24477477  T
Q  268 c 268  Q
    |    
T  24477476 c 24477476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 166 - 206
Target Start/End: Complemental strand, 24481487 - 24481447
Alignment:
Q  166 cacctcctccaccatatgtctataagtcaccgccacctcct 206  Q
    ||||||| |||||||||||||| ||||||||||||||||||    
T  24481487 cacctccaccaccatatgtctacaagtcaccgccacctcct 24481447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 210 - 265
Target Start/End: Complemental strand, 24420677 - 24420622
Alignment:
Q  210 ccttcaccaccgcctccttatatttacaagtctccacctccaccatctccatcacc 265  Q
    ||||||||||||||||| ||||| |||||||| ||||| |||||||| || |||||    
T  24420677 ccttcaccaccgcctccatatatctacaagtcaccaccaccaccatccccttcacc 24420622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 30 - 73
Target Start/End: Complemental strand, 24420713 - 24420670
Alignment:
Q  30 cctccatatgtttacaaatctcctcccccaccatctccttcacc 73  Q
    |||||||| ||||| ||||||||||| |||||||||||||||||    
T  24420713 cctccatacgtttataaatctcctcctccaccatctccttcacc 24420670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 21 - 96
Target Start/End: Original strand, 24470617 - 24470692
Alignment:
Q  21 tcaccccctcctccatatgtttacaaatctcctcccccaccatctccttcaccccctccaccctatgtctataagt 96  Q
    ||||| || ||||||||||| ||||| |||||||| |||||||| ||||| || || ||||||||| | |||||||    
T  24470617 tcaccaccacctccatatgtctacaagtctcctcctccaccatcaccttctcctcccccaccctatatttataagt 24470692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 165 - 272
Target Start/End: Original strand, 24470713 - 24470820
Alignment:
Q  165 tcacctcctccaccatatgtctataagtcaccgccacctccttcgccttcaccaccgcctccttatatttacaagtctccacctccaccatctccatcac 264  Q
    ||||||||||| ||||||||||| |||||||| || || || || || || ||||| || || ||| | ||||| |||||||| |||||||| || ||||    
T  24470713 tcacctcctcctccatatgtctacaagtcaccacctccaccatccccatctccaccaccaccatatgtctacaaatctccacccccaccatcaccttcac 24470812  T
Q  265 ctcctcca 272  Q
    | ||||||    
T  24470813 cccctcca 24470820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 30 - 73
Target Start/End: Complemental strand, 24477108 - 24477065
Alignment:
Q  30 cctccatatgtttacaaatctcctcccccaccatctccttcacc 73  Q
    ||||||||||||||||||||||| ||||||||||| ||| ||||    
T  24477108 cctccatatgtttacaaatctccacccccaccatcccctccacc 24477065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 163 - 258
Target Start/End: Complemental strand, 24477725 - 24477630
Alignment:
Q  163 catcacctcctccaccatatgtctataagtcaccgccacctccttcgccttcaccaccgcctccttatatttacaagtctccacctccaccatctc 258  Q
    ||||||| || ||||| |||||||||||||| || ||||| || || || |||||||| ||||| ||| | |||||||| ||||| || |||||||    
T  24477725 catcaccaccaccaccttatgtctataagtctcctccaccaccatctccctcaccacctcctccatatgtgtacaagtccccaccacctccatctc 24477630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 214 - 272
Target Start/End: Complemental strand, 24406616 - 24406558
Alignment:
Q  214 caccaccgcctccttatatttacaagtctccacctccaccatctccatcacctcctcca 272  Q
    ||||||| || || ||| ||||||| |||||||| ||||||||||| ||||||||||||    
T  24406616 caccaccaccaccgtatgtttacaaatctccacccccaccatctccttcacctcctcca 24406558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 168 - 262
Target Start/End: Complemental strand, 24420815 - 24420721
Alignment:
Q  168 cctcctccaccatatgtctataagtcaccgccacctccttcgccttcaccaccgcctccttatatttacaagtctccacctccaccatctccatc 262  Q
    ||||||||||| ||| | |||||||| || |||||||| || || || || || || || ||| |||||||||| ||||||||||| ||||||||    
T  24420815 cctcctccaccctatatttataagtcgccaccacctccatctccctctcctcccccaccatatgtttacaagtcaccacctccaccgtctccatc 24420721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 19 - 93
Target Start/End: Original strand, 24471142 - 24471216
Alignment:
Q  19 cttcaccccctcctccatatgtttacaaatctcctcccccaccatctccttcaccccctccaccctatgtctata 93  Q
    ||||||| |||||||||||    ||||||||||| || ||||| ||||| ||||| |||||||| ||||||||||    
T  24471142 cttcaccacctcctccatactactacaaatctccacctccaccttctccatcacctcctccaccatatgtctata 24471216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 96
Target Start/End: Complemental strand, 24420484 - 24420407
Alignment:
Q  19 cttcaccccctcctccatatgtttacaaatctcctcccccaccatctccttcaccccctccaccctatgtctataagt 96  Q
    ||||||| |||||||||||    ||||||||||| || ||||| ||||| ||||| |||||||| |||| ||||||||    
T  24420484 cttcaccacctcctccatactactacaaatctccacctccaccttctccatcacctcctccaccatatggctataagt 24420407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 168 - 265
Target Start/End: Complemental strand, 24421391 - 24421294
Alignment:
Q  168 cctcctccaccatatgtctataagtcaccgccacctccttcgccttcaccaccgcctccttatatttacaagtctccacctccaccatctccatcacc 265  Q
    |||||||| ||||||||||| |||||||| || ||||| || |||||||| || || || ||| | || |||  |||||| ||||| |||||||||||    
T  24421391 cctcctcctccatatgtctacaagtcaccacctcctccatctccttcacctcccccaccatatgtctataagagtccaccaccaccctctccatcacc 24421294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 168 - 265
Target Start/End: Original strand, 24470332 - 24470429
Alignment:
Q  168 cctcctccaccatatgtctataagtcaccgccacctccttcgccttcaccaccgcctccttatatttacaagtctccacctccaccatctccatcacc 265  Q
    |||||||| ||||||||||| |||||||| || ||||| || |||||||| || || || ||| | || |||  |||||| ||||| |||||||||||    
T  24470332 cctcctcctccatatgtctacaagtcaccacctcctccatcaccttcacctcccccaccatatgtctataagagtccaccaccaccctctccatcacc 24470429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 163 - 271
Target Start/End: Complemental strand, 24421300 - 24421192
Alignment:
Q  163 catcacctcctccaccatatgtctataagtcaccgccacctccttcgccttcaccaccgcctccttatatttacaagtctccacctccaccatctccatc 262  Q
    ||||||| || || ||||||||||| ||||| || || || || || || ||||| || || |||||| |||||||||| ||||| || ||||| || ||    
T  24421300 catcaccaccacctccatatgtctacaagtctcctcctccaccatcaccctcacctcccccaccttatgtttacaagtcaccaccacctccatccccttc 24421201  T
Q  263 acctcctcc 271  Q
    |||||||||    
T  24421200 acctcctcc 24421192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 27 - 95
Target Start/End: Original strand, 24470335 - 24470403
Alignment:
Q  27 cctcctccatatgtttacaaatctcctcccccaccatctccttcaccccctccaccctatgtctataag 95  Q
    |||||||||||||| ||||| || || || || ||||| |||||||| || ||||| ||||||||||||    
T  24470335 cctcctccatatgtctacaagtcaccacctcctccatcaccttcacctcccccaccatatgtctataag 24470403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #48
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 163 - 271
Target Start/End: Original strand, 24470615 - 24470723
Alignment:
Q  163 catcacctcctccaccatatgtctataagtcaccgccacctccttcgccttcaccaccgcctccttatatttacaagtctccacctccaccatctccatc 262  Q
    ||||||| || || ||||||||||| ||||| || || || || || ||||| || || || || |||||||| ||||| ||||| || |||||||| ||    
T  24470615 catcaccaccacctccatatgtctacaagtctcctcctccaccatcaccttctcctcccccaccctatatttataagtcgccaccacctccatctccttc 24470714  T
Q  263 acctcctcc 271  Q
    |||||||||    
T  24470715 acctcctcc 24470723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #49
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 177 - 265
Target Start/End: Original strand, 24470916 - 24471004
Alignment:
Q  177 ccatatgtctataagtcaccgccacctccttcgccttcaccaccgcctccttatatttacaagtctccacctccaccatctccatcacc 265  Q
    ||||| || ||||||||||| || ||  | || ||||||||||| ||||| ||||| |||||||| ||||| |||||||| || |||||    
T  24470916 ccatacgtttataagtcacctcctccagcatctccttcaccacctcctccatatatctacaagtcaccaccaccaccatccccttcacc 24471004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #50
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 165 - 265
Target Start/End: Complemental strand, 24477531 - 24477431
Alignment:
Q  165 tcacctcctccaccatatgtctataagtcaccgccacctccttcgccttcaccaccgcctccttatatttacaagtctccacctccaccatctccatcac 264  Q
    |||||||| || ||||||||||| |||||||| || ||||| || |||||||| || || || ||| | ||||||  ||| |||| ||| ||||||||||    
T  24477531 tcacctccacctccatatgtctacaagtcaccacctcctccatctccttcacctcccccaccatatgtctacaagagtcctcctctaccttctccatcac 24477432  T
Q  265 c 265  Q
    |    
T  24477431 c 24477431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #51
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 25 - 73
Target Start/End: Complemental strand, 24481561 - 24481513
Alignment:
Q  25 cccctcctccatatgtttacaaatctcctcccccaccatctccttcacc 73  Q
    |||| ||||||||||| ||||| |||||||| ||||||||||| |||||    
T  24481561 ccccacctccatatgtctacaagtctcctcctccaccatctccatcacc 24481513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0879 (Bit Score: 52; Significance: 1e-20; HSPs: 5)
Name: scaffold0879
Description:

Target: scaffold0879; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 165 - 272
Target Start/End: Original strand, 4572 - 4679
Alignment:
Q  165 tcacctcctccaccatatgtctataagtcaccgccacctccttcgccttcaccaccgcctccttatatttacaagtctccacctccaccatctccatcac 264  Q
    ||||||||||| ||||||||||| |||||||| ||||| || || || || ||||| ||||| |||||||||||||| ||||| |||||||| |||||||    
T  4572 tcacctcctcctccatatgtctacaagtcaccaccaccaccatccccatctccaccacctccatatatttacaagtccccaccaccaccatccccatcac 4671  T
Q  265 ctcctcca 272  Q
    | ||||||    
T  4672 cccctcca 4679  T

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Target: scaffold0879; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 165 - 262
Target Start/End: Original strand, 4524 - 4621
Alignment:
Q  165 tcacctcctccaccatatgtctataagtcaccgccacctccttcgccttcaccaccgcctccttatatttacaagtctccacctccaccatctccatc 262  Q
    |||||||| ||||||||||| || |||||||| |||||||| || |||||||| || ||||| ||| | |||||||| ||||| |||||||| |||||    
T  4524 tcacctcccccaccatatgtttacaagtcaccaccacctccatccccttcacctcctcctccatatgtctacaagtcaccaccaccaccatccccatc 4621  T

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Target: scaffold0879; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 165 - 268
Target Start/End: Original strand, 4428 - 4531
Alignment:
Q  165 tcacctcctccaccatatgtctataagtcaccgccacctccttcgccttcaccaccgcctccttatatttacaagtctccacctccaccatctccatcac 264  Q
    |||||||| ||||||||||||||||||   || ||||| || || || |||||||| ||||| ||| | ||||||||||| ||||||||||| || ||||    
T  4428 tcacctcccccaccatatgtctataagagtccaccaccaccctctccatcaccaccacctccatatgtctacaagtctcctcctccaccatcaccctcac 4527  T
Q  265 ctcc 268  Q
    ||||    
T  4528 ctcc 4531  T

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Target: scaffold0879; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 30 - 73
Target Start/End: Original strand, 4821 - 4864
Alignment:
Q  30 cctccatatgtttacaaatctcctcccccaccatctccttcacc 73  Q
    ||||||||||| ||||||||||| ||||||||||| ||||||||    
T  4821 cctccatatgtctacaaatctccacccccaccatcaccttcacc 4864  T

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Target: scaffold0879; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 171 - 265
Target Start/End: Original strand, 4770 - 4864
Alignment:
Q  171 cctccaccatatgtctataagtcaccgccacctccttcgccttcaccaccgcctccttatatttacaagtctccacctccaccatctccatcacc 265  Q
    ||||||||||||||||| |||||||| || || || || || || ||||| ||||| ||| | ||||| |||||||| |||||||| || |||||    
T  4770 cctccaccatatgtctacaagtcaccacctccaccatccccatctccaccacctccatatgtctacaaatctccacccccaccatcaccttcacc 4864  T

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Target: chr2 (Bit Score: 48; Significance: 4e-18; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 165 - 264
Target Start/End: Complemental strand, 41900371 - 41900272
Alignment:
Q  165 tcacctcctccaccatatgtctataagtcaccgccacctccttcgccttcaccaccgcctccttatatttacaagtctccacctccaccatctccatcac 264  Q
    |||| |||||||||||||||||| || || || |||||||| || ||||||||||| ||||| ||| | ||||||||||| |||||||||||| ||||||    
T  41900371 tcacttcctccaccatatgtctacaaatctcctccacctccctctccttcaccaccacctccatatgtctacaagtctcctcctccaccatctgcatcac 41900272  T

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Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 165 - 255
Target Start/End: Complemental strand, 41900179 - 41900089
Alignment:
Q  165 tcacctcctccaccatatgtctataagtcaccgccacctccttcgccttcaccaccgcctccttatatttacaagtctccacctccaccat 255  Q
    |||||||||||||| |||||||| || || || |||||||| || ||||||||||||||||| ||| ||||||| ||||| || |||||||    
T  41900179 tcacctcctccaccgtatgtctacaaatctcctccacctccctctccttcaccaccgcctccatatgtttacaaatctcctccaccaccat 41900089  T

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Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 21 - 88
Target Start/End: Complemental strand, 41899939 - 41899872
Alignment:
Q  21 tcaccccctcctccatatgtttacaaatctcctcccccaccatctccttcaccccctccaccctatgt 88  Q
    |||||||||||||||||||  ||||| ||||||||||||||||| |||||||| ||||| || |||||    
T  41899939 tcaccccctcctccatatgcgtacaagtctcctcccccaccatcaccttcaccgcctcctccatatgt 41899872  T

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Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 165 - 247
Target Start/End: Complemental strand, 41900035 - 41899953
Alignment:
Q  165 tcacctcctccaccatatgtctataagtcaccgccacctccttcgccttcaccaccgcctccttatatttacaagtctccacc 247  Q
    |||||||| |||||||||||||| ||||| || ||||| ||||| || |||||||| ||||| ||| |||||||||| |||||    
T  41900035 tcacctccaccaccatatgtctacaagtccccaccaccaccttccccctcaccacctcctccatatgtttacaagtccccacc 41899953  T

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Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 19 - 82
Target Start/End: Complemental strand, 41899893 - 41899830
Alignment:
Q  19 cttcaccccctcctccatatgtttacaaatctcctcccccaccatctccttcaccccctccacc 82  Q
    ||||||| |||||||||||||||||||| ||||| || ||||| ||| ||||||| ||||||||    
T  41899893 cttcaccgcctcctccatatgtttacaagtctccacctccaccttcttcttcacctcctccacc 41899830  T

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Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 165 - 272
Target Start/End: Complemental strand, 41899939 - 41899832
Alignment:
Q  165 tcacctcctccaccatatgtctataagtcaccgccacctccttcgccttcaccaccgcctccttatatttacaagtctccacctccaccatctccatcac 264  Q
    ||||| ||||| |||||||  || ||||| || || || || || |||||||| || ||||| ||| |||||||||||||||||||||| ||| | ||||    
T  41899939 tcaccccctcctccatatgcgtacaagtctcctcccccaccatcaccttcaccgcctcctccatatgtttacaagtctccacctccaccttcttcttcac 41899840  T
Q  265 ctcctcca 272  Q
    ||||||||    
T  41899839 ctcctcca 41899832  T

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Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 63
Target Start/End: Complemental strand, 41900133 - 41900089
Alignment:
Q  19 cttcaccccctcctccatatgtttacaaatctcctcccccaccat 63  Q
    ||||||| || |||||||||||||||||||||||||| |||||||    
T  41900133 cttcaccaccgcctccatatgtttacaaatctcctccaccaccat 41900089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 42 - 96
Target Start/End: Complemental strand, 41900638 - 41900584
Alignment:
Q  42 tacaaatctcctcccccaccatctccttcaccccctccaccctatgtctataagt 96  Q
    ||||||||||| || ||||||||||||||||| |||||||| ||| | |||||||    
T  41900638 tacaaatctccaccaccaccatctccttcaccacctccaccttatatttataagt 41900584  T

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Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 96
Target Start/End: Complemental strand, 41900365 - 41900296
Alignment:
Q  27 cctcctccatatgtttacaaatctcctcccccaccatctccttcaccccctccaccctatgtctataagt 96  Q
    ||||| |||||||| |||||||||||||| || || ||||||||||| || || || |||||||| ||||    
T  41900365 cctccaccatatgtctacaaatctcctccacctccctctccttcaccaccacctccatatgtctacaagt 41900296  T

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Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 210 - 271
Target Start/End: Complemental strand, 41900614 - 41900553
Alignment:
Q  210 ccttcaccaccgcctccttatatttacaagtctccacctccaccatctccatcacctcctcc 271  Q
    ||||||||||| || ||||||||||| ||||| ||||| || || ||||| |||||||||||    
T  41900614 ccttcaccacctccaccttatatttataagtcaccaccacctccctctccttcacctcctcc 41900553  T

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Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 184 - 272
Target Start/End: Complemental strand, 41900448 - 41900360
Alignment:
Q  184 tctataagtcaccgccacctccttcgccttcaccaccgcctccttatatttacaagtctccacctccaccatctccatcacctcctcca 272  Q
    |||| ||||| || ||||| || || || |||||||| || ||||||||||||||||| ||||| || || ||||| |||| |||||||    
T  41900448 tctacaagtccccaccaccaccatccccatcaccacctccaccttatatttacaagtcaccaccacctccttctccttcacttcctcca 41900360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 165 - 265
Target Start/End: Complemental strand, 41900611 - 41900511
Alignment:
Q  165 tcacctcctccaccatatgtctataagtcaccgccacctccttcgccttcaccaccgcctccttatatttacaagtctccacctccaccatctccatcac 264  Q
    ||||| |||||||| ||| | ||||||||||| |||||||| || |||||||| || || || ||| | ||||| ||||| || || || ||||||||||    
T  41900611 tcaccacctccaccttatatttataagtcaccaccacctccctctccttcacctcctccgccatatgtctacaaatctcctccacctccctctccatcac 41900512  T
Q  265 c 265  Q
    |    
T  41900511 c 41900511  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 210 - 268
Target Start/End: Original strand, 11879349 - 11879407
Alignment:
Q  210 ccttcaccaccgcctccttatatttacaagtctccacctccaccatctccatcacctcc 268  Q
    ||||||||||| ||||||||| ||||||| || |||||||| ||||| |||||||||||    
T  11879349 ccttcaccaccacctccttatgtttacaaatcgccacctcctccatccccatcacctcc 11879407  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 233 - 272
Target Start/End: Original strand, 11905000 - 11905039
Alignment:
Q  233 ttacaagtctccacctccaccatctccatcacctcctcca 272  Q
    ||||||||| |||||||||||||||||||| |||||||||    
T  11905000 ttacaagtcaccacctccaccatctccatctcctcctcca 11905039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 234 - 272
Target Start/End: Original strand, 11881952 - 11881990
Alignment:
Q  234 tacaagtctccacctccaccatctccatcacctcctcca 272  Q
    |||||||| ||||| ||||||||||||||||||||||||    
T  11881952 tacaagtcaccacccccaccatctccatcacctcctcca 11881990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 234 - 272
Target Start/End: Original strand, 11891186 - 11891224
Alignment:
Q  234 tacaagtctccacctccaccatctccatcacctcctcca 272  Q
    |||||||| ||||| ||||||||||||||||||||||||    
T  11891186 tacaagtcaccacccccaccatctccatcacctcctcca 11891224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 211 - 265
Target Start/End: Original strand, 11902063 - 11902117
Alignment:
Q  211 cttcaccaccgcctccttatatttacaagtctccacctccaccatctccatcacc 265  Q
    |||||||||| ||||||||| | |||||||| ||||| ||||||||||| |||||    
T  11902063 cttcaccaccacctccttatgtatacaagtcaccaccaccaccatctccttcacc 11902117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 180 - 253
Target Start/End: Original strand, 11879484 - 11879557
Alignment:
Q  180 tatgtctataagtcaccgccacctccttcgccttcaccaccgcctccttatatttacaagtctccacctccacc 253  Q
    ||||| || |||||||| ||||| || || ||||||||||| ||||||||| | |||||||| ||||| |||||    
T  11879484 tatgtgtacaagtcaccaccaccgccatctccttcaccaccacctccttatgtgtacaagtcaccaccaccacc 11879557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 189 - 265
Target Start/End: Original strand, 11879445 - 11879521
Alignment:
Q  189 aagtcaccgccacctccttcgccttcaccaccgcctccttatatttacaagtctccacctccaccatctccatcacc 265  Q
    |||||||| ||||| ||  | ||||||||||| ||||||||| | |||||||| ||||| || |||||||| |||||    
T  11879445 aagtcaccaccaccaccaactccttcaccaccacctccttatgtgtacaagtcaccaccaccgccatctccttcacc 11879521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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