View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21163_low_79 (Length: 238)

Name: NF21163_low_79
Description: NF21163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21163_low_79
NF21163_low_79
[»] chr7 (11 HSPs)
chr7 (11-225)||(39577315-39577529)
chr7 (11-217)||(39591792-39591998)
chr7 (11-226)||(39550715-39550930)
chr7 (11-207)||(39346160-39346356)
chr7 (11-184)||(39567508-39567681)
chr7 (11-207)||(39334902-39335098)
chr7 (11-207)||(39541457-39541653)
chr7 (11-173)||(39360745-39360907)
chr7 (13-211)||(39624279-39624477)
chr7 (25-79)||(38390680-38390734)
chr7 (129-207)||(42176005-42176083)
[»] chr4 (3 HSPs)
chr4 (19-173)||(2900602-2900756)
chr4 (19-173)||(2874214-2874368)
chr4 (119-173)||(2884208-2884262)
[»] chr3 (1 HSPs)
chr3 (126-210)||(49770199-49770283)
[»] chr8 (1 HSPs)
chr8 (116-173)||(4497932-4497989)
[»] chr1 (1 HSPs)
chr1 (126-173)||(2163908-2163955)
[»] chr6 (1 HSPs)
chr6 (136-202)||(3828409-3828475)


Alignment Details
Target: chr7 (Bit Score: 211; Significance: 1e-116; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 11 - 225
Target Start/End: Original strand, 39577315 - 39577529
Alignment:
Q  11 cagagagtagaattatgtcgtcaaaaagatcataagtctctggtggtggctgcaagagtgagatcacagcagttccattgagcaggtggacatactgctt 110  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39577315 cagagagtagaataatgtcgtcaaaaagatcataagtctctggtggtggctgcaagagtgagatcacagcagttccattgagcaggtggacatactgctt 39577414  T
Q  111 cattgatttcacaacttgaaaagttgttgagctatccaaaccagtagatatttcatccatgaaaagagccttagctgttcccactagcatctcccctgta 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39577415 cattgatttcacaacttgaaaagttgttgagctatccaaaccagtagatatttcatccatgaaaagagccttagctgttcccactagcatctcccctgta 39577514  T
Q  211 ttaataggttcataa 225  Q
    |||||||||||||||    
T  39577515 ttaataggttcataa 39577529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 11 - 217
Target Start/End: Original strand, 39591792 - 39591998
Alignment:
Q  11 cagagagtagaattatgtcgtcaaaaagatcataagtctctggtggtggctgcaagagtgagatcacagcagttccattgagcaggtggacatactgctt 110  Q
    ||||||||||||| |||||||| |||||||  |||||||| ||||||||||||||||||||||| ||||||||||| ||||| || |||||||| ||| |    
T  39591792 cagagagtagaataatgtcgtcgaaaagatagtaagtctcaggtggtggctgcaagagtgagattacagcagttcctttgagaagatggacataatgcat 39591891  T
Q  111 cattgatttcacaacttgaaaagttgttgagctatccaaaccagtagatatttcatccatgaaaagagccttagctgttcccactagcatctcccctgta 210  Q
    || |||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| || |||||||||||||||    
T  39591892 cactgatctcacaacttgaaaagttgtcgagctatccaaaccagtagatatttcatccatgaaaagagccttagctggtcctaccagcatctcccctgta 39591991  T
Q  211 ttaatag 217  Q
    || ||||    
T  39591992 tttatag 39591998  T

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Target: chr7; HSP #3
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 11 - 226
Target Start/End: Original strand, 39550715 - 39550930
Alignment:
Q  11 cagagagtagaattatgtcgtcaaaaagatcataagtctctggtggtggctgcaagagtgagatcacagcagttccattgagcaggtggacatactgctt 110  Q
    ||||||||||||| ||||||||||||||||  |||||||||||||||||||| | ||| ||||| || |||||||| ||||| | ||||||| | |||||    
T  39550715 cagagagtagaataatgtcgtcaaaaagattgtaagtctctggtggtggctgaaggagcgagatgaccgcagttcctttgagaatgtggacaaattgctt 39550814  T
Q  111 cattgatttcacaacttgaaaagttgttgagctatccaaaccagtagatatttcatccatgaaaagagccttagctgttcccactagcatctcccctgta 210  Q
    |||||| |||||||  ||||||||||| ||||||||||||||||||||||||||||||||||| ||||| || || | ||| || | ||||||||||| |    
T  39550815 cattgaattcacaatctgaaaagttgtcgagctatccaaaccagtagatatttcatccatgaatagagctttcgccggtccaaccaacatctcccctgca 39550914  T
Q  211 ttaataggttcataat 226  Q
    || |||| ||||||||    
T  39550915 ttgatagattcataat 39550930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 11 - 207
Target Start/End: Complemental strand, 39346356 - 39346160
Alignment:
Q  11 cagagagtagaattatgtcgtcaaaaagatcataagtctctggtggtggctgcaagagtgagatcacagcagttccattgagcaggtggacatactgctt 110  Q
    ||||||||||||| |||||||| || ||||  ||||| |||||||| ||||||| |||||||||||| || ||||| ||||| | ||||||||| |||||    
T  39346356 cagagagtagaataatgtcgtcgaatagattgtaagtttctggtggcggctgcaggagtgagatcaccgcggttcctttgagaatgtggacatattgctt 39346257  T
Q  111 cattgatttcacaacttgaaaagttgttgagctatccaaaccagtagatatttcatccatgaaaagagccttagctgttcccactagcatctcccct 207  Q
    |||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | ||| |||| || ||| || | ||||||||||    
T  39346256 cattgaattcacaatttgaaaagttgttgagctatccaaaccagtagatatttcatccatgaataaagctttagttggtccaaccaacatctcccct 39346160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 11 - 184
Target Start/End: Original strand, 39567508 - 39567681
Alignment:
Q  11 cagagagtagaattatgtcgtcaaaaagatcataagtctctggtggtggctgcaagagtgagatcacagcagttccattgagcaggtggacatactgctt 110  Q
    ||||||||||||| | ||||||||||||||  |||||||||||||||||||||| ||||||||| |  || ||||||||||| | ||||||||  ||| |    
T  39567508 cagagagtagaataacgtcgtcaaaaagattgtaagtctctggtggtggctgcaggagtgagataatggcggttccattgagaatgtggacatcttgcct 39567607  T
Q  111 cattgatttcacaacttgaaaagttgttgagctatccaaaccagtagatatttcatccatgaaaagagccttag 184  Q
    |||||| ||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||    
T  39567608 cattgaattcacaatttgaaaagttgttgagctatccaaaccagtagatatttcgtccatgaatagagctttag 39567681  T

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Target: chr7; HSP #6
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 11 - 207
Target Start/End: Complemental strand, 39335098 - 39334902
Alignment:
Q  11 cagagagtagaattatgtcgtcaaaaagatcataagtctctggtggtggctgcaagagtgagatcacagcagttccattgagcaggtggacatactgctt 110  Q
    ||||||||||||| |||  |||||| ||||  ||||| |||||||| ||||||| |||||||||||| || ||||| ||||| | ||||||||| |||||    
T  39335098 cagagagtagaataatgctgtcaaatagattgtaagtttctggtggcggctgcaggagtgagatcaccgcggttcctttgagaatgtggacatattgctt 39334999  T
Q  111 cattgatttcacaacttgaaaagttgttgagctatccaaaccagtagatatttcatccatgaaaagagccttagctgttcccactagcatctcccct 207  Q
    |||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | ||| |||| || ||| || | ||||||||||    
T  39334998 cattgaattcacaatttgaaaagttgttgagctatccaaaccagtagatatttcatccatgaataaagctttagttggtccaaccaacatctcccct 39334902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 11 - 207
Target Start/End: Original strand, 39541457 - 39541653
Alignment:
Q  11 cagagagtagaattatgtcgtcaaaaagatcataagtctctggtggtggctgcaagagtgagatcacagcagttccattgagcaggtggacatactgctt 110  Q
    ||||||||||||| || || ||||||||||   | ||||||||||||||||| | ||||||||| ||||| ||||| ||||| | ||| |||||||||||    
T  39541457 cagagagtagaataatttcatcaaaaagattgaatgtctctggtggtggctgaaggagtgagatgacagccgttcctttgagaatgtgtacatactgctt 39541556  T
Q  111 cattgatttcacaacttgaaaagttgttgagctatccaaaccagtagatatttcatccatgaaaagagccttagctgttcccactagcatctcccct 207  Q
     ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||  | ||| |||| ||||||||||    
T  39541557 tattgaattcacaatttgaaaagttgttgagctatccaaaccagtagatatttcatccatgaatagagctttagtcggtccaactaacatctcccct 39541653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 11 - 173
Target Start/End: Complemental strand, 39360907 - 39360745
Alignment:
Q  11 cagagagtagaattatgtcgtcaaaaagatcataagtctctggtggtggctgcaagagtgagatcacagcagttccattgagcaggtggacatactgctt 110  Q
    |||||||||| || ||||||||||||||||  |||||||||||||| ||||||| ||||||||||||  | ||||| ||||| | ||| ||||| ||| |    
T  39360907 cagagagtagtataatgtcgtcaaaaagattgtaagtctctggtggaggctgcaggagtgagatcaccacggttcctttgagaatgtgaacatattgcct 39360808  T
Q  111 cattgatttcacaacttgaaaagttgttgagctatccaaaccagtagatatttcatccatgaa 173  Q
    |||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  39360807 cattgaattcacaatttgaaaagttgttgagctatccaaaccagtagatatttcatccatgaa 39360745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 13 - 211
Target Start/End: Original strand, 39624279 - 39624477
Alignment:
Q  13 gagagtagaattatgtcgtcaaaaagatcataagtctctggtggtggctgcaagagtgagatcacagcagttccattgagcaggtggacatactgcttca 112  Q
    ||||||| ||| ||||| ||||||||||  ||||||||| ||| ||||||    |||||||||||||||||||  ||||| |||| |||| | || ||||    
T  39624279 gagagtaaaataatgtcatcaaaaagattgtaagtctctagtgatggctgttgtagtgagatcacagcagttcttttgagaaggtagacaaattgtttca 39624378  T
Q  113 ttgatttcacaacttgaaaagttgttgagctatccaaaccagtagatatttcatccatgaaaagagccttagctgttcccactagcatctcccctgtat 211  Q
      |||||||||| |||||| | |||||||  |||||||||| ||||||| ||||||| ||| ||||  ||   || ||| |||||| ||||||||||||    
T  39624379 gcgatttcacaatttgaaaggctgttgagtcatccaaaccaatagatatatcatccacgaatagagatttcaatggtccgactagcgtctcccctgtat 39624477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 79
Target Start/End: Complemental strand, 38390734 - 38390680
Alignment:
Q  25 atgtcgtcaaaaagatcataagtctctggtggtggctgcaagagtgagatcacag 79  Q
    ||||| |||||||| | ||| |||||  |||||||||||||||||||||||||||    
T  38390734 atgtcatcaaaaagcttataggtctccagtggtggctgcaagagtgagatcacag 38390680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 207
Target Start/End: Original strand, 42176005 - 42176083
Alignment:
Q  129 aaaagttgttgagctatccaaaccagtagatatttcatccatgaaaagagccttagctgttcccactagcatctcccct 207  Q
    |||||| |||||||||||||| || || ||||||||||||||||| ||  | || |||| ||| || ||||||||||||    
T  42176005 aaaagtggttgagctatccaatcctgttgatatttcatccatgaagagtacttttgctggtcctaccagcatctcccct 42176083  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 19 - 173
Target Start/End: Original strand, 2900602 - 2900756
Alignment:
Q  19 agaattatgtcgtcaaaaagatcataagtctctggtggtggctgcaagagtgagatcacagcagttccattgagcaggtggacatactgcttcattgatt 118  Q
    ||||| ||||| |||||||| |||||||||||||||| ||| || |  |  ||||| || ||||||||||| || |  || ||||| ||| | |  ||||    
T  2900602 agaataatgtcatcaaaaagttcataagtctctggtgctggttgaagcaaagagataactgcagttccattaagaatatgaacatattgcctaagagatt 2900701  T
Q  119 tcacaacttgaaaagttgttgagctatccaaaccagtagatatttcatccatgaa 173  Q
    |||||| ||| |||||||| || || ||||| |||||||||||||||||||||||    
T  2900702 tcacaatttggaaagttgtggaactgtccaagccagtagatatttcatccatgaa 2900756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 19 - 173
Target Start/End: Complemental strand, 2874368 - 2874214
Alignment:
Q  19 agaattatgtcgtcaaaaagatcataagtctctggtggtggctgcaagagtgagatcacagcagttccattgagcaggtggacatactgcttcattgatt 118  Q
    ||||| ||||| |||||||| |||||||||||||||| |||||| |  | |||||| |  ||||||||||  || |  |  ||||| ||| | |  ||||    
T  2874368 agaataatgtcatcaaaaagttcataagtctctggtgctggctgaagcaatgagataagtgcagttccatgaagaatataaacatattgcctaagagatt 2874269  T
Q  119 tcacaacttgaaaagttgttgagctatccaaaccagtagatatttcatccatgaa 173  Q
    |||||| |||||||| ||| || ||||| || ||||| |||||||||||||||||    
T  2874268 tcacaatttgaaaagctgtggaactatctaagccagttgatatttcatccatgaa 2874214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 119 - 173
Target Start/End: Complemental strand, 2884262 - 2884208
Alignment:
Q  119 tcacaacttgaaaagttgttgagctatccaaaccagtagatatttcatccatgaa 173  Q
    |||||| ||| |||||||| || || |||||||||||||||||||||||||||||    
T  2884262 tcacaatttggaaagttgtggaactgtccaaaccagtagatatttcatccatgaa 2884208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 126 - 210
Target Start/End: Complemental strand, 49770283 - 49770199
Alignment:
Q  126 ttgaaaagttgttgagctatccaaaccagtagatatttcatccatgaaaagagccttagctgttcccactagcatctcccctgta 210  Q
    |||||| |||||||| || ||||||||||| |||||||| ||||||||||| ||  | |||| ||| ||||||||||| ||||||    
T  49770283 ttgaaatgttgttgaactgtccaaaccagtcgatatttcgtccatgaaaagcgctcttgctggtccaactagcatctcacctgta 49770199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 116 - 173
Target Start/End: Complemental strand, 4497989 - 4497932
Alignment:
Q  116 atttcacaacttgaaaagttgttgagctatccaaaccagtagatatttcatccatgaa 173  Q
    ||||||||| |||||| |||||||| ||||| | |||||| |||||||||||||||||    
T  4497989 atttcacaatttgaaatgttgttgaactatcaagaccagttgatatttcatccatgaa 4497932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 126 - 173
Target Start/End: Original strand, 2163908 - 2163955
Alignment:
Q  126 ttgaaaagttgttgagctatccaaaccagtagatatttcatccatgaa 173  Q
    ||||||||||||||| || ||||||||||| |||||||| ||||||||    
T  2163908 ttgaaaagttgttgaactgtccaaaccagttgatatttcgtccatgaa 2163955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 202
Target Start/End: Original strand, 3828409 - 3828475
Alignment:
Q  136 gttgagctatccaaaccagtagatatttcatccatgaaaagagccttagctgttcccactagcatct 202  Q
    ||||| || ||||||||||| |||||||||||||||||||  ||  |||||| ||| ||||||||||    
T  3828409 gttgaactgtccaaaccagtcgatatttcatccatgaaaaccgctctagctggtccaactagcatct 3828475  T

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