View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21163_low_82 (Length: 236)
Name: NF21163_low_82
Description: NF21163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21163_low_82 |
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| [»] chr7 (4 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 208; Significance: 1e-114; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 17 - 236
Target Start/End: Original strand, 35449233 - 35449452
Alignment:
| Q |
17 |
ttccctcattaattccttgttgaaagcccatgttcgtgttctgactataatgcatgtttgaacaatctccctgagcagacacgtcaaccataccaaacaa |
116 |
Q |
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| T |
35449233 |
ttccctcattaattccttgttgaaagcccatgttcgtgttctgactataatgcatggttgaacaatctccttgagcagacacgtcaaccataccaaacga |
35449332 |
T |
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| Q |
117 |
tgatccaccattattcaactcataagataaattggattcccacccatgttgcatattttttgggttcagaccttcagcaggttgcacagacacataatag |
216 |
Q |
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| T |
35449333 |
tgatccaccattattcaactcataagataaattggattcccacccatgttgcatattttttgggttcagaccttcagcaggttgcacagacacataatag |
35449432 |
T |
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| Q |
217 |
catgctggattctcagttgc |
236 |
Q |
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| T |
35449433 |
catgctggattctcagttgc |
35449452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 23 - 109
Target Start/End: Original strand, 35449008 - 35449094
Alignment:
| Q |
23 |
cattaattccttgttgaaagcccatgttcgtgttctgactataatgcatgtttgaacaatctccctgagcagacacgtcaaccatac |
109 |
Q |
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| T |
35449008 |
cattaattccttgttgaaaacccatgttcgagttctgactataatgcatgcttgaaaaatctccatgagcagacatatcaaccatac |
35449094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 232
Target Start/End: Original strand, 35440982 - 35441197
Alignment:
| Q |
17 |
ttccctcattaattccttgttgaaagcccatgttcgtgttctgactataatgcatgtttgaacaatctccctgagcagacacgtcaaccataccaaacaa |
116 |
Q |
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| T |
35440982 |
ttcccccattaactccttgttgcatacccatgtttgagttctgagtaaaagtcatgcttggaatatctccatgagcagacgtatcaaccataccaaatga |
35441081 |
T |
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| Q |
117 |
tgatccaccattattcaactcataagataaattggattcccacccatgttgcatattttttgggttcagaccttcagcaggttgcacagacacataatag |
216 |
Q |
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| T |
35441082 |
tgatcctttgttattaaacagatcagaaaaattggataccacaccatgttgcagattttttgagttcaagccttctggagtttgcacagaaacatgagaa |
35441181 |
T |
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| Q |
217 |
catgctggattctcag |
232 |
Q |
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| T |
35441182 |
tatgctggattctcag |
35441197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 129
Target Start/End: Original strand, 35448780 - 35448886
Alignment:
| Q |
23 |
cattaattccttgttgaaagcccatgttcgtgttctgactataatgcatgtttgaacaatctccctgagcagacacgtcaaccataccaaacaatgatcc |
122 |
Q |
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| T |
35448780 |
cattaactccttgctgcaaatccatgtttgagttctgactatgatgcatgcttaaaatatctccgtgagcagacatctcaaccatatgaaatgatgatcc |
35448879 |
T |
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| Q |
123 |
accatta |
129 |
Q |
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| T |
35448880 |
accatta |
35448886 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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