View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21163_low_83 (Length: 233)
Name: NF21163_low_83
Description: NF21163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21163_low_83 |
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Alignment Details
Target: chr1 (Bit Score: 170; Significance: 2e-91; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 17 - 218
Target Start/End: Original strand, 1869057 - 1869258
Alignment:
| Q |
17 |
agaaagaccaagcatgaaggaagtggctatggaattggagggaatgaggttaatgaataagcactcttggatcaatgatgactcaaatgtagaggagagt |
116 |
Q |
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| T |
1869057 |
agaaagaccaagcatgaaggaagtggctatggaattggagggaatgaggttaatgaataagcactcttggatcaatgatgactcaaatgtagaggagagt |
1869156 |
T |
|
| Q |
117 |
cggtacttgcttcatgaatcatcatctagcctttatgaacctggtgatagcagcacacatggagatatcagatatgacagcctgaaagaacttgaactga |
216 |
Q |
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|||| ||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| ||||||||||| ||||||| | || ||||| |
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| T |
1869157 |
cggttcttgcttcatgaatcatcatctagcttttatgaacctggtgatagcatcacacatggagatatcggatatgacagcttgaaagaccatgtactga |
1869256 |
T |
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| Q |
217 |
ta |
218 |
Q |
| |
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|| |
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| T |
1869257 |
ta |
1869258 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 17 - 218
Target Start/End: Original strand, 1843448 - 1843649
Alignment:
| Q |
17 |
agaaagaccaagcatgaaggaagtggctatggaattggagggaatgaggttaatgaataagcactcttggatcaatgatgactcaaatgtagaggagagt |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
1843448 |
agaaagaccaagcatgaaggaagtggctatggaattggagggaatgaggttaatgaataagcactcttggatcaaagatgactcaaatgtagaggagagt |
1843547 |
T |
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| Q |
117 |
cggtacttgcttcatgaatcatcatctagcctttatgaacctggtgatagcagcacacatggagatatcagatatgacagcctgaaagaacttgaactga |
216 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| ||||||||||| ||||||| | || ||||| |
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| T |
1843548 |
aggtacttgcttcatgaatcatcatctagcatttatgaacctggtgatagcatcacacatggagatatcggatatgacagcttgaaagaccatgtactga |
1843647 |
T |
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| Q |
217 |
ta |
218 |
Q |
| |
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|| |
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| T |
1843648 |
ta |
1843649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 17 - 205
Target Start/End: Original strand, 1857459 - 1857647
Alignment:
| Q |
17 |
agaaagaccaagcatgaaggaagtggctatggaattggagggaatgaggttaatgaataagcactcttggatcaatgatgactcaaatgtagaggagagt |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
1857459 |
agaaagaccaagcatgaaggaagtggctatggaattggagggaatgaggttaatgaataagcactcttggatcaaagatgactcaaatgtagaggagagt |
1857558 |
T |
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| Q |
117 |
cggtacttgcttcatgaatcatcatctagcctttatgaacctggtgatagcagcacacatggagatatcagatatgacagcctgaaaga |
205 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||| || ||||||||||||| ||||||||||| ||||||| |
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| T |
1857559 |
aggtacttgcttcatgaatcatcatctagcatttatgaacctggtgatagcaacaaacatggagatatcggatatgacagcttgaaaga |
1857647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 18 - 164
Target Start/End: Complemental strand, 1815584 - 1815437
Alignment:
| Q |
18 |
gaaagaccaagcatgaaggaagtggctatggaattggagggaatgaggttaatgaataagcactcttggatcaatgatgactcaaatgtagaggagagt- |
116 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| ||||||||||||||| |
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| T |
1815584 |
gaaagaccaagcatgaaggaagtggctatggaattggagggaatgaggttaatggataagcactcttggatcaatgcagaccttaatgtagaggagagtc |
1815485 |
T |
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| Q |
117 |
cggtacttgcttcatgaatcatcatctagcctttatgaacctggtgat |
164 |
Q |
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| ||||||||||||||||||||||||||| |||||||| ||||||| |
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|
| T |
1815484 |
cactacttgcttcatgaatcatcatctagcatttatgaatttggtgat |
1815437 |
T |
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